RNA id: XM_026933981.2


Basic Information

Item Value
RNA id XM_026933981.2
length 2250
RNA type mRNA
GC content 0.43
exon number 13
gene id dync2li1
representative False

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 20855695 ~ 20865244 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CAATTTGCGCCGTTGCCCCTCGCAACAGTCTTCTGAGAAAACGCTGCCTAGCAAGCTGGTCTCAGGACGGTAAACATCGACTGAATTATAGCAAGCTacgaaaaaagaaaagacagcaaCAGGAAATAATGCGTAAAATAAGtgcCGACACACTGTGGGATCTGGCTGCAGATGAGGTCCGGGCCAGAGAGAGAAGAACTGGACATGATCAGgaggacgatgatgatgatggtggtggtgaggaAGATGGCCATGCTCCGTGCGAGAGGACTGTTTTCTTTATGGGCAGTAAAACTGGGGGTAAAACAACAATACTGTTCAGGTGTATTGACAGAGATGAAGCCACCAAACCAACCCTGGCTTTGGAGTACACATTCGGTAGGCGAGCAAGAGCACACAGCACActcAAAGATGTAGCTCACCTGTGGGAACTGGGAGGAGGCACATCTTTATCAGATCTTGTGCAGATACCCATCACTCCTCAGAATCTCAGCGTGCTGTCTGTGGTGTTGGTACTGGACCTGTCTAAGCCCAATGCACTCTGGGCCACCATGGAGAGACTCCTTCAGGCAGCTCTAAACCAAGTGGAAAAGGCATTTGCCATAACCAAGAGGCCAGGAGAGTCCAGACCCAGCAAACAGCTAAGCCAAAGGAGAGCATTGCGGATCCTCCCCAAAGACCACCCAGACAAAGAGCTCATTAGCCCCTTCCCTGTGCCTCTTCTTATGATCGGTAGCAAGGTTGACATCTTTCAGGACTTTGAGTCAGAGAAGAGGAAGGTGATTTGTAAGACCCTGCGTTTTCTGGCTCATTACTATGGTGCATCCCTGATATTCACTAGCAGTAAATCAGAGACAACGATGTCTAAAGTCAAGAACTTCTTCAATCATCTAGCTTTTGGGACTGAGAGAGGaaagtaCTTTTCAACAGACCACAGCAAACCTCTCATAATTCCAGCAGGCATGGACTCTCTCAGTCAGATAGgatCTGTTGATGTTGATCTTGGAACACTGCATGCTAAAACTCCACTGGACCTATGGAAAAAAgtttttgaaagattttttcCTCCAGAGAGCACTAATGAACGTAAAGAAGTGAAAGATCCAGCCAAAGACCCCCAGTACAGTGAGCTCATTATAGATGCAATGAGAGCACAGAAAGACCAGGAGCTGGAACATTATAAGCGAGAACAGGCGAAGTCATGGAAAGGCTTGACCCTGGAGTCCTAGAGCTACAGAAACTCTCCCCAAAAACTCAACATTAATGTATGCTATTTctacatttctctctttttgttcagaaaaataatttttggcaCTGTTCCTTATACACACGTAATGCATAGTTGAAGCACAGGCCAGACACGGTGCTTTAACGGCTTGTAATACcgtgtttttatattatttcctGAAAAGATGCAGTAATGTAAGAATTGCACATGTAAATATGCAGTTagtaattgtataaaatgttattCCAATGTCTTACTATTTAGTAAATTACAGACTTCATGAAATCTCCAgtattattggcacccttcatgaaaatgagcagaaattaatatataaaatcagtgaCACACACCAGGGAATATTTTTAGTTTGATCATATGGGGAAGCTGTATACGTTTTATTTTAGCACAATATATTTTCAAACATAAAACCTTTTATTGAGTAGTGCATTTTGTTGCAGAAcagttttcaaaattattggcacccccacaatttattttggtaaaGCCTATCCTGGAGAAAATAAGTGTGTTATTAAGGTTGCAGATACCTGCAGAGCtcatgtgtcaaacacaagGCCTGCGGGCCAAATCTGGCCCTCAGCTTCGTTTCATTTGGCCCACGTGAACTTGGAAAAATGATCGGCCCGTAgtacactactgctcaacattttcacacacttcCACAATTCACAGCAGATCTGTAGCATAGCGACTGCTATTGTAAAACATACGAACACAGCTCACAGTGCTTAACTGAAATGTATGAGCAGTGGCCTTTTTTCCGCTTTTAAAATATCCAAAGGGTAGTTACTGTAAACCACCTTATATACTTGCACTCCAATTACTACTGTTCCTGGCTTGACCATGATCTGAATGTGTGCTGtgcttgatgtaagtcacactcgcATCAAAAAGCGATTCAGAAGCACGTCGTGTGTTTTGCTGGAAATAGTGTGaccagaaattaattttggagggatgtgtatatatgcaaaataaaacaattgtttttctga

Function

GO:

id name namespace
GO:0042073 intraciliary transport biological_process
GO:0007275 multicellular organism development biological_process
GO:0005874 microtubule cellular_component
GO:0030286 dynein complex cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003774 motor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU59178 lncRNA downstream 107911 20744419 ~ 20749478 (-) True G50002
TU59128 lncRNA downstream 334091 20523064 ~ 20523298 (-) True G49959
TU59126 lncRNA downstream 335325 20521694 ~ 20522064 (-) True G49957
TU59108 lncRNA downstream 350980 20505801 ~ 20506409 (-) True G49944
TU59107 lncRNA downstream 352419 20504237 ~ 20504970 (-) True G49943
TU59405 lncRNA upstream 185919 21051163 ~ 21051414 (-) True G50215
TU59425 lncRNA upstream 212204 21077448 ~ 21077702 (-) True G50235
TU59432 lncRNA upstream 218529 21083773 ~ 21084005 (-) True G50242
TU59450 lncRNA upstream 244724 21109968 ~ 21110177 (-) True G50260
TU59451 lncRNA upstream 245871 21111115 ~ 21111352 (-) True G50261
XM_026942264.2 mRNA downstream 55320 20749672 ~ 20802069 (-) True sdccag8
XM_034302990.1 mRNA downstream 228222 20619932 ~ 20629167 (-) False zbtb18
XM_026943039.2 mRNA downstream 230105 20619932 ~ 20627284 (-) False zbtb18
XM_026943029.2 mRNA downstream 231308 20619932 ~ 20626081 (-) True zbtb18
XM_026937225.2 mRNA downstream 291957 20554493 ~ 20565432 (-) True desi2
XM_026942334.2 mRNA upstream 3145 20868389 ~ 20877844 (-) True abcg5
XM_034302948.1 mRNA upstream 21354 20886598 ~ 20937637 (-) False lrpprc
XM_034302947.1 mRNA upstream 21354 20886598 ~ 20937637 (-) True lrpprc
XM_034302848.1 mRNA upstream 145448 21010692 ~ 21025615 (-) True prepl
XM_026933654.2 mRNA upstream 341773 21207017 ~ 21210374 (-) True six2a
TU58946 other downstream 487960 20357988 ~ 20369429 (-) False gng2
TU58944 other downstream 488292 20357934 ~ 20369097 (-) False gng2
TU58943 other downstream 488292 20357988 ~ 20369097 (-) False gng2
XR_004577815.1 other downstream 1189728 19635838 ~ 19667661 (-) False atrn
TU58169 other downstream 1537656 19316487 ~ 19319733 (-) True G49195
TU59887 other upstream 746530 21611774 ~ 21614267 (-) False plekhh2
trnai-uau other upstream 1030940 21896184 ~ 21896277 (-) True trnai-uau
TU60082 other upstream 1084611 21949855 ~ 21950189 (-) True G50837
TU60345 other upstream 1170041 22035285 ~ 22101383 (-) False LOC113540944
XR_003404067.2 other upstream 1909111 22774355 ~ 22788783 (-) False znf318

Expression Profile