RNA id: XM_026934040.2


Basic Information

Item Value
RNA id XM_026934040.2
length 2418
RNA type mRNA
GC content 0.48
exon number 2
gene id fignl1
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 18056126 ~ 18059166 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tttgaaggCGGCGGGAAAGTTGAGAGTGGTGTAAGTGGTTTATACTTGGATGTATGAGGCTAAAAGTTATTACACCCTGGTAAATTATTTGAATGAATAACACAAAAACGTTCATAACGCCAGAGACTGAAGCAGACCAGGCATGAGCAGTGCACACCTGGACGAGTGGCAGAAGAGGTCCTTTGACATTTCGTCTGGCACATATACACCTGAACAGACGGCTGACGCTTATCGGGCGCACATTCTGTCCATTCAGTATGCATGGGCGAATGCCGAGCTCTCTCCAGCCGGAGCTGCCAGCCTGTTCAGGACCTACACTGAGCGCTACGCAGCAGTCCTGGACTCAGACGACCAGCGCACAGGGCTGAATAACTACGCCGACAGTGCCCTGCACCTGGCCCGCAATCAGAGAAACCACAGTGACAAATGGGAATCGTCATTAACAGTAGAAAATGTGTTCACCCTGCCGTTCGTGCAGAGAATGATGAAGAGTAGGGTGGATGACAACAGTCTGCTTGTGGATCCCGCAGTTGCTGACATTATTGTTGGTGGGGAAGTCAGCCAGAGTTGTGGTAAAGGTATGATTGAGTCTAGTGCTGCTGGTGGATGTAAACCTGAGCATCCTTCACCCTCATCTATGAGTCATATCAGTGCTGGGGTAGAGAGTACAGCAGGTAACTTGGTCAGTGGTGCTGCAGAGAGGACCAGAAGCAAAGAAAATGGTCTTCCTTCAGCCCATAATGCCCCTAGAGCACCAGCAGGGGTAACTCCACTCTTGGTTCATAACACTCGTAATTCCCCTACCAACCCTGGCTCTTTTCCTCCTTCAAGTTTTGCTAGCACAAGCATGTCCAGTGCGAACAATTACCATTCTGTGTTCTACTCCTCCACAAATCCCTCTAAGAGGAAGAACTTCTACAGTTCAGGAACTGAAAGCAACAGAAGCTCATTCCTGCCACAGGGAGGTCATGAAGTTGGAGATAGTAGTCGGAGAAGAGAGGAGTTTCCTGGCACTAACTTTAAAACGGCACGAGAGCAGCTTATTGTTGACCAGCAGAAAAAATATTCCCATCAGGGCCAGCGGGGTCCATCAGCTCCTGTTGGTACAGTAACCAAAAAATCTCTGGGGGCAAACAGGTCACGGGGGGCCTTCTCCAAATTTGTCTCACCAATGCCAAGGCAGGAGGAGGGAAGCAACACCAGGGATGACCCAACACAAGACGTTCAGCCTGTTGATGAACGACTAAAGAACTTTGAACCTAAAATAATTGAACTGATTATGAGCGAAATTATGGACCACGGCCCACCTGTGGCTTGGGAGGATATTGCTGGCCTTGAGTTTGCCAAAGCTACCATTAAGGAAATTGTAGTGTGGCCCATGCTCAGGCCTGACATTTTTACAGGTCTCAGAGGTCCGCCTAAGGGAATTCTCTTGTTTGGTCCTCCAGGTACTGGGAAAACACTCATAGGGAAGTGCATAGCCTGTCAGTCTGGTGCCACGTTTTTCAGCATTAGTGCATCATCACTCACCTCTAAGTGGgtgggagaaggagagaagatgGTTAGAGCTCTGTTTGCCATCGCCCGGTGCCATCAGCCAGCGGTCATTTTTATCGATGAGATTGACTCCCTGCTTTCTCAGCGCACGGATGGAGAACATGACTCATCTCGCCGGATTAAGACTGAGTTTCTTGTCCAGCTTGATGGTGCTGCAACCTCCTCTGAGGATCGAATATTGGTGGTGGGGGCCACCAACCGGCCGCAGGAGATTGATGAAGCAGCCCGGCGTCGCCTGGCCAAGCGACTCTACATCCCCCTTCCAGAGGCTGCCGCTCGTCAGCAGATAGTGACCAACCTAATGTCACGGGAGAAGAGCCAGTTGAGAACTGATGAGCTTGAGAAAGTGGTGTCAAGCACAGAGGGTTTCTCAGGGGCTGATATGACACAACTGTGCCGTGAAGCAGCACTTGGCCCGATCCGCAGCATCCAGCTGAGTGACATTGCCACCATCACACCTGAGCAGGTGCGACCTATACTTTACTGTGACTTCCAGGAGGCTCTTAAGACTGTACGGCCCAGTGTGTCTACCAAAGATCTGGAGCTCTATGAAGACTGGAACAAGACTTTTGGCTGTGGTAGATAATCACTAAGATTTaatttgtggtgtgtgttgtcagtgttAGGTATTTTTTGTGTAGAATTGAATGGTAACGAACTTGAAAGATCTGTgctatttaatgttgtaaaattaACAGGTGACTGAAAGCAGTGTTgactttctgtgtttttttttattttgaaagcctCTTGGTACATTTATACAAGTTCAGTGTTACCCAGTATCATTTTCATTAGGGCCTGGATGTTGgaaaatgttggaaaaataaataaattgactcttttctgtgtttattccaa

Function

GO:

id name namespace
GO:0005524 ATP binding molecular_function
GO:0017111 nucleoside-triphosphatase activity molecular_function

KEGG:

id description
K22766 FIGNL1; fidgetin-like protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU57164 lncRNA upstream 69555 17986281 ~ 17986571 (+) True G48323
TU57144 lncRNA upstream 114804 17902052 ~ 17941322 (+) True G48305
TU57141 lncRNA upstream 158670 17896322 ~ 17897456 (+) True G48302
TU57020 lncRNA upstream 287190 17726419 ~ 17768936 (+) True G48209
TU56890 lncRNA upstream 452972 17601874 ~ 17603154 (+) True G48133
XR_004577850.1 lncRNA downstream 22451 18081617 ~ 18084799 (+) True LOC113541886
XR_003404227.2 lncRNA downstream 22451 18081617 ~ 18084799 (+) False LOC113541886
TU57367 lncRNA downstream 115134 18174300 ~ 18174499 (+) True G48478
TU57379 lncRNA downstream 162142 18221308 ~ 18221979 (+) False dlg5a
TU57387 lncRNA downstream 162902 18222068 ~ 18222547 (+) True G48494
XM_034302568.1 mRNA upstream 9259 18018395 ~ 18046867 (+) False klc1a
XM_034302565.1 mRNA upstream 9259 18018396 ~ 18046867 (+) True klc1a
XM_034302567.1 mRNA upstream 9259 18018396 ~ 18046867 (+) False klc1a
XM_034302569.1 mRNA upstream 9259 18018396 ~ 18046867 (+) False klc1a
XM_034302573.1 mRNA upstream 9259 18018397 ~ 18046867 (+) False klc1a
XM_026945478.2 mRNA downstream 81523 18140689 ~ 18149740 (+) False mocos
XM_026945456.2 mRNA downstream 81524 18140690 ~ 18149740 (+) True mocos
XM_026945470.2 mRNA downstream 81524 18140690 ~ 18149740 (+) False mocos
XM_026945464.2 mRNA downstream 81525 18140691 ~ 18149740 (+) False mocos
XM_026939202.2 mRNA downstream 99297 18158463 ~ 18173187 (+) True anxa11a
TU55884 other upstream 1819478 16234535 ~ 16236648 (+) False lrrc18a
XR_003404341.2 other upstream 1983059 16070714 ~ 16073067 (+) True cxcl18a.1
TU55689 other upstream 1984206 16070759 ~ 16071920 (+) False cxcl18a.1
TU55629 other upstream 2258922 15793428 ~ 15797204 (+) False eif4ebp2
XR_004577898.1 other upstream 3688680 14361367 ~ 14367446 (+) False cgas
XR_003403773.2 other downstream 1282184 19341350 ~ 19356098 (+) True sfxn5a
XR_004577568.1 other downstream 1282184 19341350 ~ 19356098 (+) False sfxn5a
XR_004577569.1 other downstream 1282184 19341350 ~ 19356098 (+) False sfxn5a
XR_003403774.2 other downstream 1282184 19341350 ~ 19356098 (+) False sfxn5a
XR_003403775.2 other downstream 1282184 19341350 ~ 19356098 (+) False sfxn5a

Expression Profile