RNA id: XM_026934220.2


Basic Information

Item Value
RNA id XM_026934220.2
length 2968
RNA type mRNA
GC content 0.47
exon number 19
gene id rufy2
representative False

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 9876707 ~ 9896794 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CGTGCTGTGCTGCGTTCCAGCAGGAGACGTCTCCTCCCCATCATCCACTTCTACTGCAGCAAATGAGGCTCCATCATTGCAAAGGCAGTGCAAACAGAGCCAGTTTCATGCATCCGGGTTCAGCCTGAGAgcgGTCACTGGAATCAGTGGACTGGATCCCGAAGGCTGAGGTCTGAGTAAGGATTATTAAAGCTGTGGGAAAAGGACAAGGCCAGAGGTGGAGCAGTCATGTACTCGCCTCAGAGTCTTCACCGTTGGGGCATCACCCACAGCGAGAGCATGGAGCGCCTTGCCTACTGTCAAGCCTTCCGGGATCCTATGGCTATGGAAAGGGCCAACTTGCTGAACATGGCCAAGCTCAGCATTAAAGGGCTGATCGAGTCGGCTCTGAGCTTTGGTCGTACGCTGGACTCTGATTATCCCCCACTGCAGCAGTTCTTTGTGGTCATGGAGCACTGTCTGAAGCATGGCCTTAAAGTGAAGAAGACGTTTCTTGGATACAACAAGTCGCTGTGGGGGCCTCTGGAGATGGTGGAGAAGCTCTGCCCGGAGGCAGGGGAGATTGCAGCCAGTGTTCGAGACTTACCCGGCCTCAAGACTCCTCTGGGTCGAGCGAGGGCTTGGCTGCGTCTGGCACTGATGCAGAAGAGATTAGCAGACTACCTGCGTGTACTGATCACCAGGAAAGACATACTGAGtgaTTTCTATGAAAGCTCAGCAGTCATGCTGGAGGAGGAGGGAGCCGTCATCGTTGGTCTCCTGGTGGGACTCAACGTCATCGATGCCAACCTGTGTGTGAAGGGCGAGGACCTTGACACCCAAGTTGGGGTGATTGACTTCTCCATGTACTTAAAAAATGATATTGATGACTACAGAAGTGAAGAAAGAAATGGTCAAATTGCGGCAATATTGGACCAGAAGAACTACGTTGAAGAACTAAACAGGCAGCTCAATTCCACTGTTCAAGGTCTGCAGGGGCGTGTGGACTCATTAGAGAAATCAAATTCCAAACTCATTGAGGAGTTGGCAATAGCAAAAAACAACATCATCAAACTGCAGGAAGAGAACCACCAGCTAAGAAACGAGAATTCATTAATTATCATGAAGGCTCAGCGCCGTCTTGAGGTTACACAGGGGGACGTAAACTGTGAGCTGGATACCTATAAACAGTCTAGGCAGGGCCTGGACGAAATGTACAACGAGGCACGGAGGCAGCTTAAGGAGGAGTGTCAGCTCCGGCAGGATGTGGAGAATGAGCTGGTGGTGCAGGTTAGCATGAAGCAGGAAATGGAACTGGCCATGAAGCTCTTAGAGAAGGACATCCATGAGAAGCAGGACACTTTGATTGGACTTCGGCAACAACTAGACGAGGTTAAAGCCATCAATGTGGAAATGTACCAGAAAATGCAGACGTCTGATGATGGCATGAAGCAGAAGAATGACATGATTGCACGACTGGAGGAGAAGACCAATCAGATAACGGCTACGATGAAACAGCTAGAGCAAAGATTGCAGGAAGCGGAGAGGGATCGACTCAGCACCGAGGACGGAGTGCGCAGATTCAAGCAGGACTTTGCCAACAAAGCAGACAGCCTCCAAAAGCAGATCGCccagagagagaagcagatGTTGCAGCTGGAAACAGACTTGAAAATCGAAAGGGAGTGGAGACAAACTCTACAGAACGACCTGGAAAGAGAACAAGAGACTGTCAGCCAACTGAGGGCTGAAGCACAGCATATTAATGTGCTCAAGAAGGAGTTTCACAGATTGCAGGATGAGAACACACAGCTGAAGGGGATTTGTGAGGAACAAGAAAAAGCACTAGAAGAGCTGGGCTGCAAACTCAGCGAGTCAAAACTGAAAATTGAGGACATAAAGGAGgccaataaagcacttcagGGTGGGCAGGTATGGCTTAAGGACAAAGATGCCACACACTGCAAACTTTGTGAGAAAGAGTTCTCCATCTCCAGGAGAAAGCATCACTGTAGGAACTGCGGAGAAATCTTCTGCAATGCTTGCTCAGATAACGAGTTACCCCTCCCTGCTTCTCCGAAGCCTGTGCGAGTGTGTGATACGTGCCATGCTCTACTCCTCCAGCGCTGCTCTTCTAATGCCACATAAGACGTACACCAGTGTGTGCTGCCCATGCGGCCGGCTTTGGCTTTAACTCGGAGTGCCGTGATTTCCTGCCATGTGTCaagctataacacaagtgaccAAAATGGCTGTTTCCCAGTGTTTGAAGTTTACATTTCACACAGCAGTACTCCCCGTGGACAGCGTGGAAGTGAGGTAGCTGTTTAACGTTAAGTGCCCAGTGAAGGACGTGGGTATGGTGAACATACTGATTCAAGtccttgtattttttatttattttcttttgttttttttaaaaaaaaaaaaaaaagatagtcAACTGCCTTTAGCACTACAACTAAGCAGCACTAAAGTGTACTAATACTCCAAACAGGTGAACGACATTCCAGTCTCTGCTCTGAGGAATGCAGGGTGAACAGTACATTCTTTATATAGTGTTAAGAAAGCAAAAAGCTGTATTATGGAAATACAGTGGGgattttatttaagtttattttgtattaaaatgaacgTGTGCCTGTCTGAGAAGCACCATGCCTCTCACATAGGCAAAACTGTTTCATAAGGCACTAATGTTTTCAATGCTGCTCAAGTTTGATTGGGACGGATCCATGAAATAGCAATCACAACGTCCTGAACAAAgtattattccacactgtagtACATTACAGGCTGTACTTAGATGCCAAGACATGTTTCAAAAAGTGCAGATCTAGACTGCTACTTGCCTtgaatgtttattatgtttcaTCTTAATGACTTTAATTGTAAACTGTTATGGAAACAgttgttaaaatgaaattttcacATATTACAATGTATGGAGCTGTATACATTTCTTTAATCACTAAAGCAAATACTTACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU51561 lncRNA upstream 4888 9871546 ~ 9871819 (+) True G43615
TU51332 lncRNA upstream 204967 9668611 ~ 9671740 (+) True G43422
TU51269 lncRNA upstream 349548 9526861 ~ 9527159 (+) True G43360
TU51246 lncRNA upstream 381497 9494977 ~ 9495210 (+) True G43337
TU51239 lncRNA upstream 387748 9488759 ~ 9488959 (+) True G43330
TU51592 lncRNA downstream 162732 10059526 ~ 10077649 (+) False G43646
TU51598 lncRNA downstream 174373 10071167 ~ 10072098 (+) True G43651
TU51593 lncRNA downstream 177388 10074182 ~ 10077649 (+) True G43646
TU51610 lncRNA downstream 196941 10093735 ~ 10101531 (+) True G43663
XR_004577885.1 lncRNA downstream 264705 10161499 ~ 10163956 (+) True LOC117596896
XM_026932787.2 mRNA upstream 11766 9831802 ~ 9864941 (+) True tspan15
XM_026939550.2 mRNA upstream 61583 9797248 ~ 9815124 (+) True hk1
XM_034302918.1 mRNA upstream 62661 9806267 ~ 9814046 (+) False hk1
XM_026939562.2 mRNA upstream 81133 9784506 ~ 9795574 (+) True hkdc1
XM_034302919.1 mRNA upstream 93672 9773932 ~ 9783035 (+) False supv3l1
XM_034303034.1 mRNA downstream 7271 9904065 ~ 9906393 (+) True LOC117596887
XM_034303032.1 mRNA downstream 12559 9909353 ~ 9943988 (+) True psda
XM_026933386.2 mRNA downstream 79337 9976131 ~ 9994390 (+) True glud1a
XM_026936595.2 mRNA downstream 119689 10016483 ~ 10035390 (+) True mmrn2a
XM_026933156.2 mRNA downstream 631583 10528377 ~ 10540040 (+) True si:dkey-191g9.5
trnak-cuu other upstream 1407011 8469624 ~ 8469696 (+) False trnak-cuu
TU50445 other upstream 1410395 8465747 ~ 8466312 (+) True G42685
XR_003404394.2 other upstream 2210674 7649198 ~ 7666033 (+) False naa15b
TU49753 other upstream 2655684 7203950 ~ 7221023 (+) True G42075
TU48562 other upstream 4534957 5318534 ~ 5341750 (+) True G41047
TU52056 other downstream 655465 10552259 ~ 10558295 (+) True sprn
XR_004577889.1 other downstream 697780 10594574 ~ 10608704 (+) False LOC113543929
XR_004577793.1 other downstream 1202799 11099593 ~ 11171114 (+) False dntt
trnag-ccc other downstream 1694541 11591335 ~ 11591405 (+) True trnag-ccc
XR_003404598.2 other downstream 1786070 11682864 ~ 11726772 (+) False LOC113545306

Expression Profile