RNA id: XM_026934272.2


Basic Information

Item Value
RNA id XM_026934272.2
length 3121
RNA type mRNA
GC content 0.39
exon number 2
gene id prop1
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 21517786 ~ 21522535 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tttcaaactaagAAAATAATGTCCttaatccagtgtgcataagtTGCATAAATTTGATTTCCAGTCAGTCAGAATCAAACATCTAGCCAAAAGGGTAACAAAAGCTGTAgtatgtattttatatgtagGGAGGAAGTGCAGTGAGGGAGAGACTCCAATAACTGCAGTAAAACTATTAGGTTCACTTTCCTTACCAATAAAGTCTGAGATAAAAATCTATCACAAACTGGAGATATACCATCGTGTATTTTTGATAATCTAGTTTTAGTGAAATAGGCACAATACAAAAGTTTGCACTTAATAAGGGAATGCCTTGTACAGATAGAAGaattgtatgtgtttgttttcttggcttttgttgttccactgagtcagagtcactTGATGATGTTGAGGAACTAGTGGagttagatggatggagaaatttgtccatttttgttGCTGAACTATGTTCATGCAGTGTGTCAGGATAGtggaaaaagactaaaatagcatgtacagtctttttttaaatgtggcatGTTTGAATGGGACTTccagaaacatttcaaaacagtGGTGCGCATATTCTGCCTTCATAGTTAGTGCGATATTTGTAACATTAATTTGTAAGATTGTAAAATGAGTAAAACAAAGGAGGTGAGTTTCTCTCACgactttatttgtaaatcagaTGATCTCACGTTGATTGCAGCCCCTAGTTAGTGGACCCTTGGTTAGTGGGTGTTTTAAACTGATTAATATTTCCTGTTCCTCTTGATGTCTTATTTCTGGCAGTTTTTTTGTGCCACTTCAGCACAACCTACACACAGTAATAAATCTGACAAATATTGTTCTTTTACTATTTGTtctattacaaaaaataaattattgcatTATCTGTAAAAGAGGCAAATATTTCTTCCAGTATTtggttaaaatgttattatgcaTGGTATTAGTTGGACCAGGAGAGCAGGTAATGAGGGGTGTGATTGCTGAATGATGTCACTGAGGGTGGTCATGTAAAAGCTCAGGTAAGCCCACCGTGTCTCTCCTCATACCTGAAACCCTCAGAGAAGACCAGCTATGGAACATGCCAAGCCTCATCCACAGTTCTCCGACATGTACTCTGAAGTCATTGTCAGCTCAAGCGCAGGTaagaattatttattacagtgtttGAATGCGACATTTTAAAAGTGTGCTTTCAAACTTTCTCCTAAGGCTTAAACTCAAACTCAAATCCACTTCTGGCCCTGGGTGTACTTCACATGACTTTGACCCACCTTCGTTTCTCTTAGTATGTATGAATATATTCCATGATACCATTGTACACTAATGGATAAATGAATGTGATGAAAGATTTGTCTTTATATGAGAGATCTTACCATTTTCGgtgtatatacagtttatatttatatgaatgatATGAATATATGATGCTATATGTTTATATGATATTTATCCATTCAACCACTAATATTAGTTAGACAAAACTTTTAAACAAAGCAATCAGAAAGATAATTAAACTTAAATTAGATTAAGTCCAGTAGTAAGTCCAGTATCTACCTCCCATACTGACATTGTGAGCAGAAACCATTGCATCCAAGTCCTGCGATTTGACAAAttagtcacttttttttttagcttttgttCACTTAATCTTGTCTCAATCCTTTGGCCTctggtatctctctctctcacgatATTGAGTTTAAGCAGCAAAGCCTACAGCCTATTGGGTTCCTGGCCTTTTGTTAGGAAACCTTAATGCTCTTAAACCCTTTCCCCTTCAGAGAACTGCCATTTGTGAGATGTGTTTTTGCAAATCAAATTCCTCCAAAGTTGATcaatctttttccacctttaaccAGAGAGAAATGtgtacacagattttttttgtctttcaggaACATCTGTGTCACAAAGGTTCAACTTTCcaaatttttcttcttcactttGTTGAATGCAGATGTTCAGGGTCCTCCAAAGAAGGAGTCCACGGGGCCTGAAAGCAGTGGGGATGTGGCAGGTCGAGTTAGACTCCACCCGTCTCCATCTCGCAGGAGACATCGAACCACCTTCAGCCATGAACAGCTGGAGCAGCTGGAGTTAGCTTTCAGACACAACCACTACCCTGACATCTACTGCCGAGAGGAGCTGGCTCAGCAAACTAAACTCAATGAGGCCCGCATCCAGGTTTGGTTCCAGAACCGTCGTGCCAAGCAAAGGAAACAGGAGCGGGCCACTCAGAAATCCCTGCAAGGAGGTATGATGCCAGGACGTGGGGTTCTCCCAAACAGTGCACGTGGTGGTATGGCAAGACAGTACCAGTGCTCTCACTCCCTACCACACATACCCAAATTTTCCTCAGTGCTGCCCTCTGCTGATTTCTCCCCCCACACAGCAGCCGGCACTCAGCTCACTTGCCCTTCAGCTCCCACTGTAGCCCAGCCTGCCAGGCAGCACGAGGACTGGTACTGCCAGCTGAGGCACATTGGGGCGACAGCCGCCAGCCTGCCCCATGCCTCAGTGTTTTCCCTGACCTCTGTCCCAGCGCTGGAGCCAGCCGTCCACTGGAACTAGAGTAGGCTGAAAGAGCGAGATCTAAAGCCTcccatttttgttattttgttagtTTTTAGTTTATTCGAGCCACATGCCCTGATATTATTGCAGTTCCCTTTAGGTTGATGATTGTTTAACAGTAATGcttgtgtgattttgtgtgatTTGGTACACAAAGTTGTTAATGTCTGTATATTTCTCTCCTTTAATATgaatgtcaggaaaaaaaatgaggagaaaatattttcacacaattttATTACAGTTCCAAAACAGATGTTGTCTTGAGGTTATTAATATActtttctaaaacaaaaataattaattcacACTTCATTCACAAACCTACAAGCATTAAACtgtgaaaatataatattttaaacagtctTGTTTACATTCTGAATAGTCTGGTGTAACTAGATTTATGTATGGCCTTGTAGAAAATCCTCTTACCACCTGAATATGGGTTCTTAAGCAGTGCTACATTTCAAATgatagtatatatacacaaatttacTTCAACATCAGATGTCATATATTTTGATAGAAATAAATTAGACTTGGCATATGA

Function

GO:

id name namespace
GO:0021984 adenohypophysis development biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU59746 lncRNA upstream 31 21516282 ~ 21517755 (+) True G50528
TU59584 lncRNA upstream 167753 21313204 ~ 21350033 (+) False G50384
TU59582 lncRNA upstream 167753 21346165 ~ 21350033 (+) True G50384
TU59506 lncRNA upstream 303840 21210837 ~ 21213946 (+) True G50311
TU59504 lncRNA upstream 307671 21206394 ~ 21210115 (+) True G50310
XR_004577869.1 lncRNA downstream 2902 21525437 ~ 21526067 (+) True LOC117596875
TU59732 lncRNA downstream 44880 21567415 ~ 21574053 (+) True G50516
TU60015 lncRNA downstream 346289 21868824 ~ 21869028 (+) True G50772
TU60026 lncRNA downstream 352278 21874813 ~ 21875015 (+) True G50783
XR_003404631.2 lncRNA downstream 482183 22004718 ~ 22015489 (+) True LOC113545609
XM_026939385.2 mRNA upstream 16287 21480699 ~ 21501499 (+) True socs5b
XM_026939376.2 mRNA upstream 16287 21480702 ~ 21501499 (+) False socs5b
XM_026943202.2 mRNA upstream 333968 21180935 ~ 21183818 (+) True six3a
XM_026936906.2 mRNA upstream 398822 21025733 ~ 21118964 (+) True camkmt
XM_026936915.2 mRNA upstream 398822 21087941 ~ 21118964 (+) False camkmt
XM_026934261.2 mRNA downstream 8736 21531271 ~ 21560099 (+) True ttc7a
XM_034302940.1 mRNA downstream 17604 21540139 ~ 21560099 (+) False ttc7a
XM_026932609.2 mRNA downstream 83850 21606385 ~ 21609100 (+) False epcam
XM_026932600.2 mRNA downstream 83866 21606401 ~ 21609142 (+) True epcam
XM_034302820.1 mRNA downstream 123201 21645736 ~ 21731864 (+) False thada
trnae-cuc_10 other upstream 512267 21005450 ~ 21005519 (+) True trnae-cuc_10
TU59013 other upstream 942307 20574973 ~ 20575479 (+) True G49862
XR_004577569.1 other upstream 2161688 19341350 ~ 19356098 (+) False sfxn5a
TU60121 other downstream 498872 22021407 ~ 22023811 (+) True wu:fj16a03
TU60615 other downstream 1261793 22784328 ~ 22786505 (+) True G51271
XR_003404579.1 other downstream 1591650 23114185 ~ 23115039 (+) True LOC113545030
TU60962 other downstream 1931893 23454428 ~ 23455549 (+) True G51562
TU61166 other downstream 2174497 23697032 ~ 23697294 (+) True G51749

Expression Profile