RNA id: XM_034302942.1


Basic Information

Item Value
RNA id XM_034302942.1
length 2080
RNA type mRNA
GC content 0.39
exon number 4
gene id mcfd2
representative False

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 21522208 ~ 21526777 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AAAGGTGAAGTCAGTACGGTAgacatcatcatcatcatcatcatcatcatggggTACACAAAGGGGCAGCTGTGGCgctgcctgctgctgctgtcctGCTGTGTGCTTTGTGTTCACTCACATGGAGATCAACATGGTCAAGTGTCAGGAAACCTACATCCTCCCATCACCCGTCTGGATAGGAACATGGTGCAGGACAAAGACCACATCATGGAGCATTTAGACGGGGTGATCGAAAAGCCAGAGTCGGATATGACCCCTCAAGAACTGCAGCTTCACTATTTCAAAATGCATGACTATGACGGTAACAACCTGCTGGATGGGCTCGAGCTTGCCACTGCCATTACACATGTACACAAGGAGGAGAAAGGTGAGAACAGCCCACCAATGAAAGAACAGGACCTCATCAGTATTATTGATCAAGTCCTTCGGGATGATGACAAAAACAATGATGGCTACATCGACTACGCCGAGTTTGCGAAGTCTCTCCAGTAACaggggaggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagtggtgtaaGTGGTGGTGGGGTATGGACGAGTGTGTGCTGCCTTACTGTGAGCTCTGATTACCTCTAATTGAACGGTATCAGTGGTGTATGCACTTCACATACACAGGAAAGCTACAGCATTCCTTAGACTGAGTGGCTGCACGTAGTAGTGCACAGCTCAGTCTTTTTGCTGTttcaacacattttattaaactccTAAGGCACTTGTAATTCAATGATACAACTGTCATCTCCCTCCAGGATTGAATCTGAGCAGCTAGGATCTACTGAACATACTTTATCCTGTCAGAATAAACTGTGGGATGAAGTTAAATGGATTGTATTATGACACGAGAtgtctaaagaaacaatatATTTCCTGAATTTTTGACTTGCCAAATCCATCTGCTGTGAAGACATGTCCTCCTTTATTattgctgcagtgtgttttgaaGCAACATTCTAATTCAAAGCAATGGATGATGTTGAAACAGGATATAATTACTTCCTTTCCTGAGAACACCTCTTCATCTAGCACTGATGGATAATTGTCAAGCTTACTAAATTTGCATGAAATCATTTATACAttccctgatttttttatttattattattttttttaatataaatgacttTGGTATGAGAAACTGACATAAGAAACGTCTGCCAAATCCCAGTTCTCGAAGAGTTTCCTTCCTGGCTTTACTGTAGATATCCAGCAGCTACTTTGGTTCTGTGATAAATATGGCCACTAAGTGgccatatttttcacatttctcaaCAGTGCTGATCCAGTTCTTGCTTTTGGTATGAagaaatatgataaatatgGGTCTGTAAGTGTGATTTAACCTGGCTACCTAGTATGCTATTGATCACACAAACGTTTCCCAGTCCCAGTGCTGGAGCACCACTGTATTTCACTCTGgagtgttttgctttttttcactTCATCAGGTGTGTGAGGACAGGAACACCACTAACCTGTGTTAGTGCAGCAGTATTCCAACAGTAACTGGAACCAGGAAAAACAGACTTAGAGGATTTTGTCTTCTAATAAAGACCATTTAAGAGTGATGAAGGGACTTTTTCTAGACTACTTGATATTTTCCTTCCATCACACAAGTTGAATGTAATCCAAGCCTGTCATATTTGTCATGtgttgttactgttgttgttcGTTAAATTCTCAGCTGTACTTGAGTTATTTGTGAACAGAGAAGATAGACAACAGTTATCATATGCCAAGTCTAATTTATTTCTATCAAAATATATGACATCTGATGTTGAAgtaaatttgtgtatatatactatcATTTGAAATGTAGCACTGCTTAAGAACCCATATTCAGGTGGTAAGAGGATTTTCTACAAGGCCATACATAAATCTAGTTACACCAGACTATTCAGAATGTAAACAagactgtttaaaatattatattttcacaGTTTAATGCTTGTAGGTTTGTGAATGAAGTgtgaattaattatttttgttttagaaaagTATATTAATAACCTCAAGACAACATCTGTTTTGGAACTGTAATaaaattgtgtgaaaa

Function

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU59860 lncRNA downstream 4130 21517815 ~ 21518078 (-) True G50626
TU59858 lncRNA downstream 6566 21515152 ~ 21515642 (-) True G50624
TU59853 lncRNA downstream 9386 21512605 ~ 21512822 (-) True G50619
TU59831 lncRNA downstream 100079 21387743 ~ 21422129 (-) True prkceb
TU59644 lncRNA downstream 136711 21346142 ~ 21385497 (-) True G50433
TU59884 lncRNA upstream 79744 21606428 ~ 21610897 (-) True G50647
TU59895 lncRNA upstream 132974 21659658 ~ 21737394 (-) True G50656
XR_004577805.1 lncRNA upstream 241130 21767814 ~ 21786645 (-) True LOC117596829
TU60045 lncRNA upstream 355202 21881886 ~ 21882106 (-) True G50802
XR_003404488.2 lncRNA upstream 366850 21893534 ~ 21899039 (-) False LOC113544235
XM_026942151.2 mRNA downstream 43503 21392447 ~ 21478705 (-) False prkceb
XM_026942143.2 mRNA downstream 43503 21392447 ~ 21478705 (-) False prkceb
XM_026939881.2 mRNA downstream 138092 21349757 ~ 21384116 (-) False epas1b
XM_034301822.1 mRNA upstream 36033 21562717 ~ 21568242 (-) True stpg4
XM_026935733.2 mRNA upstream 42772 21569456 ~ 21574081 (-) True calm2a
XM_026935721.2 mRNA upstream 51179 21577863 ~ 21602259 (-) False si:ch73-105b23.6
XM_026935712.2 mRNA upstream 51179 21577863 ~ 21602259 (-) True si:ch73-105b23.6
XM_034303051.1 mRNA upstream 84979 21611663 ~ 21645512 (-) True plekhh2
TU58946 other downstream 1152779 20357988 ~ 20369429 (-) False gng2
TU58944 other downstream 1153111 20357934 ~ 20369097 (-) False gng2
TU58943 other downstream 1153111 20357988 ~ 20369097 (-) False gng2
XR_004577815.1 other downstream 1854547 19635838 ~ 19667661 (-) False atrn
TU58169 other downstream 2202475 19316487 ~ 19319733 (-) True G49195
TU59887 other upstream 85090 21611774 ~ 21614267 (-) False plekhh2
trnai-uau other upstream 369500 21896184 ~ 21896277 (-) True trnai-uau
TU60082 other upstream 423171 21949855 ~ 21950189 (-) True G50837
TU60345 other upstream 508601 22035285 ~ 22101383 (-) False LOC113540944
XR_003404067.2 other upstream 1247671 22774355 ~ 22788783 (-) False znf318

Expression Profile