RNA id: XM_026934445.2


Basic Information

Item Value
RNA id XM_026934445.2
length 1921
RNA type mRNA
GC content 0.50
exon number 13
gene id khdrbs2
representative False

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 9526940 ~ 9630009 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GATCATCCGCGGCGTCTCGCGTTTAAACCGAGCGCGAGGACATGGGTGCGCAGCCGTGAATTCTTCCACATCGCTCGCGCGCATATCGACTACCAGAAGCTGTCACTTATCAGACAGTTATTTTAAAGCAAGCTTAAAACCATCTGTCACTGCTCAGCACTTGTGTGTCATCTTACCTGCACTTTGCCGTGTTCGGGACTGAGGTGAATAATGGACCAGGACAAGTACCTGCCCGAGCTGCTGGCTGAGAAAGAAAGCTTGGATCCGTCGTTCGTGCACGCGATGCGCCTTCTGGCTGAAGAAATCGAAAAGTACGAAGGGGATGAGCTTAGGAAAGACGGCGAGGTGAAGAAATACCTGGATGTCATcagcaacaaaaacatcaaGCTGTCAGAGAGAGTGCTTATTCCTGTGCAGCAGTACCCGAAGtttaattttgTTGGGAAACTGCTCGGGCCCCGGGGCAATTCCATGAAAAGATTACAAGAGGAAACCGGAGCGAAGATGTCCATCCTTGGCAAGGGCTCAATGAGAGATAAAGACAAGGAAGAAGAGCTGAGGAAAAGTGGGGAGGCCAAATATGCCCATTTGAACAACGATCTCCATGTTTTAATTGAAGTCTTCGCACCACCTGGAGAGGCGTATTCCCGCATGAGCCATGCCTTggaggaaattaaaaaattccTGGTTCCTGATTACAATGATGAGATCAGGCAAGAGCAGCTGCGTGAGCTGTCCTACCTAAACGGCTCTGATGACCCAAGCAGAGGAAGGAGTGTCCGAGGACGTGGCATACGGCTCACCTCCACAGCTGCCACACGGGGTCGAGGGGGAGCAGTGCCACCTCCTCCACCTGGCCGAGGAGCCGTAGTGCCCAGGGGAACTGTGGGTACACGTGCATCCCTGCCCACCACCATGCTAACTAGAGGCGTCTCAGCACCGCGGGCCAGAGGAACAGCAGGGACTCCTGGATATAGAGCGCCTCTGCTGCAGGCCACACACAAAACCTACGATGACTATGGTTATGATGATGGATATGATGGGGAATATGACGAACAGGGTTATGAGGCCTACGACGATGGTTACAGCAACCAGTCCAAAAGCGGTTCAGAATATTACGAATACGGCCATGGAACTAATGACGATACCTACAACAATTACGCAGAAGAGGAGTGGACTCAGCCACGGCCGAGCCTCAAAGCTCCAACTGCAAGACTTTCACGAGGGGGCTACAGAGATCACCCCTATGGTAGATACTAAAGGTCGCTTTCCGTGAGCTGAGATACAGAGATCATCAGAAGGGATTCGCTGCAGTGTGTACAAAGGACTGAGGGCTGATAAAACCAGAGCAGAGAAGTAATCTCACCTGCTAGATGTGACAATCAGCTCCACTCATCAACAGCCTGCTGCTACCTCAAGGCCTGGCTCATGTGGAGGCAGCCAGAGGAGAGCCATGTCCTCTCTGTCCTTTCCAGCAGACCAGAGCAGATGATCAGCCTCGAGGCCTCTTAATGAACACAGCTGTCAAAAGATCCTCAGCAGTACTGCCTCAGCAGCTAAGGATTTGTGCTGCTAATCaaaaggtcatgagttcaagccccagcactgccaagctgctactgttgggCCTTTGAGAGAGACCCTTGGCCTTCTCTGCTCCAGTGGTGTTGTatctctgaccccagcttcctaacaagctgggatatgtgcagaaaagaatttcactctaCTGTACTTGTACATgtgacaataaaggctttcttcGAAATCTTCCAAAAGAGATGTATATTCAATTTGATGAGGGAATAAACTGATGTTAGGATTAATCCGACACCCTGATCTTTATTAGAGATTCAGAAGAAGCCTTCATGCTTATTTAATTGGATATTAAACCTGATATTAAACCTGATTGGATATTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU51431 lncRNA downstream 1443 9528516 ~ 9528727 (-) True G43509
TU51261 lncRNA downstream 13165 9516711 ~ 9517005 (-) True G43352
TU51168 lncRNA downstream 118168 9382708 ~ 9412002 (-) True G43270
TU51072 lncRNA downstream 188248 9317428 ~ 9341922 (-) True G43198
TU50882 lncRNA downstream 512534 9016202 ~ 9017636 (-) True G43029
TU51505 lncRNA upstream 129467 9759476 ~ 9760212 (-) True G43569
TU51522 lncRNA upstream 131235 9761244 ~ 9761467 (-) True G43586
TU51523 lncRNA upstream 131604 9761613 ~ 9761812 (-) True G43587
TU51524 lncRNA upstream 132288 9762297 ~ 9762556 (-) True G43588
XR_003404277.2 lncRNA upstream 152656 9782665 ~ 9806230 (-) True LOC113542224
XM_034303158.1 mRNA downstream 71578 9409070 ~ 9458592 (-) False il22ra2
XM_026945186.2 mRNA downstream 71578 9409076 ~ 9458592 (-) False il22ra2
XM_026945175.2 mRNA downstream 71578 9409076 ~ 9458592 (-) False il22ra2
XM_026945200.2 mRNA downstream 71616 9409076 ~ 9458554 (-) False il22ra2
XM_026945192.2 mRNA downstream 116273 9409076 ~ 9413897 (-) True il22ra2
XM_026944122.2 mRNA upstream 38712 9668721 ~ 9719918 (-) True LOC113544990
XM_026944090.2 mRNA upstream 38712 9668721 ~ 9719896 (-) False LOC113544990
XM_034303187.1 mRNA upstream 38712 9668721 ~ 9719893 (-) False LOC113544990
XM_034303188.1 mRNA upstream 38712 9668721 ~ 9719893 (-) False LOC113544990
XM_026944130.2 mRNA upstream 38712 9668721 ~ 9719893 (-) False LOC113544990
TU51003 other downstream 301286 9224881 ~ 9228884 (-) True sf3b5
TU50809 other downstream 676376 8801243 ~ 8853794 (-) True G42967
TU50810 other downstream 676376 8849109 ~ 8853794 (-) False G42967
XR_003403913.2 other downstream 746372 8755869 ~ 8783798 (-) False zdhhc5a
trnae-cuc_7 other downstream 1059741 8470358 ~ 8470429 (-) True trnae-cuc_7
trnag-gcc_1 other upstream 2078605 11708614 ~ 11708684 (-) True trnag-gcc_1
TU53378 other upstream 2514886 12144895 ~ 12152506 (-) False tmem254
TU53492 other upstream 2894627 12524636 ~ 12534075 (-) False LOC113537616
TU53486 other upstream 2901434 12531443 ~ 12534075 (-) False LOC113537616
TU53537 other upstream 3001804 12631813 ~ 12633015 (-) False LOC113539135

Expression Profile