RNA id: XM_026934564.2


Basic Information

Item Value
RNA id XM_026934564.2
length 3003
RNA type mRNA
GC content 0.46
exon number 4
gene id si:dkey-174i8.1
representative False

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 10323316 ~ 10330221 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGATTTCGCTTCATTCAGATAGTGTTAGAGAGACAAATCTGCTTTGGGAATTATGGGCTTTAATTGCTCACTTGGGATATTTATTTGGACATATTCAGATATTATGACCAGATAGAATCTgatttcactgtatttttttctgtcagatgGAAGGGTATTCTAACCACAGTGGCACAGAGGTAGACAGGATTGCCTGATCTGGATATGACTGTGGTCTGGAACTGGGGTTTGCCCACTTTCTGGGTGGCACTCAGCTGCCTCTCATGCTTGAGACTGGCACTGCCACTCAGTGGAGAGCGCAAGATCTACCCAAAACCACCTACCATGGGTAAAGTCCCTCCACACATCATCTTTGTGATGGTGGACGATCAGGGCTACAATGATGTGGGCTACCATGGCTCGGACATCCACACGCCGGTACTGGACCAGCTGGCTGCTGAAGGGGTGAAGCTGGAGAACTACTATGTCCAGCCAATCTGCTCACCCTCTCGTAGTCAGCTCATGACCGGACGGTATCAAATTCACACTGGCCTTCAGCACTCCATCATTCGCTCACGTCAGCCCCTGTGTCTGCCCCTCGACATGCCCACACTTCCCGAAAGGCTGCGTCAGGCCGGCTACAGCACCCACATGGTGGGAAAGTGGCACCTGGGCTTCTGCCGGCCTGAGTGTCTGCCCACTAGCCGAGGCTTTCAGAGCTTTCTGGGTTCACTGACTGGTAGTGGAGACCATTTTAACTTCCAGAGCTGTGACGGAGCAGAGACTTGTGGCTTTGACCTGCACGATGGTGAACGACCGGCCTGGGAGTTGAGTGGGAACTACTCCACATGGCTGTATGCACAGAGGGTGAAAACAATCTTGCGGACTCATGACCAGCAGAAGCCTCTGTTCCTGTACGTGGCACTCCAGGCTGCTCACACTCCTTTACAGGCTCCTGCTCATCTCCTCCAGCGTTATGCTTCTCTTGGGAATCAGCCACGGCGCCATTACGCCGCCATGCTAAGTGGTGTGGATGAGGCTGTGGGCGAGATTGTGGCGGAGATGCGTAATCGAGGGTACTACCGTAACTCCGTGCTCATCTACTCTTCAGATAACGGAGGCCAGCCTCTGTCGGGGGGCTGCAACTGGCCCCTCCGTGGAGGGAAAGGCTCATACTGGGAGGGGGGAGTGCGAGCGGTGGGCTTTGTTCACAGCCCTctgctgaagatgaagaggaagatcAGTCGTGCTTTAATACATGTCTCAGATTGGTACCCGACCTTGCTGTATCTGGCAGGATCTCCTGAGCCAGACCCTCAGCGCTTAGATGGGTGTAATGTTTGGGGGGCCATCAGTCAGGGCCTACCTAGCCCTCGTACTGAAATCTTGTTTAACATCGACCCTGTTTCGCGGCGACATGGAGAGCATGATCGCAGGCTGTTGATGGAAAACGGCTTTGGGATGTGGGACACAGGAGTGCGTGCAGCAATTCGAGTGGGTGACTGGAAGCTCCTGACAGGGAACGTGGGAGATGGAGACTGGTTCCCCCCACAGATCCTGCCTGGAGCTCCACAGCAGTGGCAGGACATGGAAAAGAGACAGGATCAGCGTGGGAAGTCTGTGTGGCTCTTCAACATCAGCGCTGACCCTTTTGAGAGGCATGATCTGACACAAGCTAGGCCTGAGGTGGTAAAGCTTCTGCTGTCAAGGATTGCTGACTATAACCGCACTGCTGTGCCTCCAAAAAACCCACCAGATGATCCAATGGCTGACCCCCAGCTCCATGGAGGCGTCTGGATGCCATGGCTGgcaaagaaagaaggagagggTGCAGACAGAAGAGGAGCGACAGATAGACGCAATTGGAAGCTTAGATTCAAAACCTGCAAAGTGTGCAAACTGAGAGCTCTGTTTAGAAAGATCAGGTCAGAGAATGAGACATGCGCTGTGCTCTGTTACACAACaatgagagaagaggaggaggatggtgaAGATCTCCCTGGAGTAAAGATGCTGTATGGCTACATATGAAACAGTTGTGGAGCTTGTACTTATAACTACATCTAAATCATGAGCCATATTTATACAGTTTGTGTATATCCATTTCATGTTGAATTTAGGCATTGCCtcttataaaacaaaatattggtATATTTTATGCATCTGGTTCTAACAATTCCATTTCTGGGAACGTGAATTCCTCAAAACGTAAATGTAGTTCAAATAACAATGCAATTGGAAATATTCAGTATTTGAAAAATACTGAGTACAATATATGAAAAGCACACATCTGTAAGGGTGTGTTAGTGATGGGACGCAGTCCTGTGTGGTGATGACACGATCCTGCAGGGAGAAGACCAGGTCATGGTGCTGTAAACTGTACAGCTGGCCAGTCTCCAGGCTGTCACCTTCCCTGACCTCATCACGAGTCCGTCATTAAATCTAATCAGTCATGGAGCAATGATGTAGAACTTTCCCTTCAGACACTGGCATTTTCTTCTCTGGAATGGGATTATGATCCCAAAAATAAGGTGATGAATAACAATGTGATTACTAAAAATGGTACATAGATGGAtggagacatttttaaaaactatataaTGATACTCGAGGCTCAATAATCAATTATTATTCCATcagcgtttttttttaatttggcaaataaaaccttttttgtcaaatgtatatttttaaataataaaactttcttTCAGAATTGTGGCAAAGTTGACCATCTTAAAAGGTATTCTGAGAAAAGgtctaaaaatgaaaatgctaaaGACAGAAAGGGTTTCTTATTCTTTAATGTTTAGACTAATTCATACATTTACTGCAGcctatttttaaccatttaatgtGGACAATTATACTAAATGACAGGTTTGTATTTTACAATATGTCAAACCTttcataaaaatgatcaaacatgcttgtaaaaacattatgtacaataatacacattttccactcaaacaGTACTGTAGGAGAAACAGTTTCtttgttctaacaaaaaaaaaagtcatt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU51991 lncRNA downstream 6869 10315725 ~ 10316448 (-) True G43987
TU51975 lncRNA downstream 18235 10291067 ~ 10305082 (-) True G43982
TU51974 lncRNA downstream 57729 10265356 ~ 10265588 (-) True G43981
TU51966 lncRNA downstream 69379 10253724 ~ 10253938 (-) True G43978
TU51888 lncRNA downstream 80435 10241941 ~ 10242882 (-) True G43910
TU52133 lncRNA upstream 325487 10653714 ~ 10655844 (-) True G44103
TU52138 lncRNA upstream 345119 10673346 ~ 10723668 (-) True G44105
TU52216 lncRNA upstream 488445 10816672 ~ 10817292 (-) True G44173
TU52312 lncRNA upstream 594082 10922309 ~ 10925258 (-) True G44262
TU52323 lncRNA upstream 625278 10953505 ~ 10956492 (-) True G44271
XM_026940922.2 mRNA downstream 5122 10255625 ~ 10318195 (-) False camk2g2
XM_034302810.1 mRNA upstream 3506 10331733 ~ 10447727 (-) False ndst2a
XM_034302809.1 mRNA upstream 3506 10331733 ~ 10447727 (-) False ndst2a
XM_034302808.1 mRNA upstream 3506 10331733 ~ 10447727 (-) False ndst2a
XM_034302806.1 mRNA upstream 3506 10331733 ~ 10447727 (-) False ndst2a
XM_034302807.1 mRNA upstream 3506 10331733 ~ 10447727 (-) False ndst2a
TU51003 other downstream 1094433 9224881 ~ 9228884 (-) True sf3b5
TU50809 other downstream 1469523 8801243 ~ 8853794 (-) True G42967
TU50810 other downstream 1469523 8849109 ~ 8853794 (-) False G42967
XR_003403913.2 other downstream 1539519 8755869 ~ 8783798 (-) False zdhhc5a
trnae-cuc_7 other downstream 1852888 8470358 ~ 8470429 (-) True trnae-cuc_7
trnag-gcc_1 other upstream 1380387 11708614 ~ 11708684 (-) True trnag-gcc_1
TU53378 other upstream 1816668 12144895 ~ 12152506 (-) False tmem254
TU53492 other upstream 2196409 12524636 ~ 12534075 (-) False LOC113537616
TU53486 other upstream 2203216 12531443 ~ 12534075 (-) False LOC113537616
TU53537 other upstream 2303586 12631813 ~ 12633015 (-) False LOC113539135

Expression Profile