RNA id: XM_034303127.1


Basic Information

Item Value
RNA id XM_034303127.1
length 4898
RNA type mRNA
GC content 0.43
exon number 7
gene id LOC113539142
representative False

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 8855620 ~ 8867270 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATTAATGCCAGTTCTTATGATGTGGATGTACAAGCAGCCTGGCTTTGCCCTGCGTCTCCTTTGTGAACTGCAGAAACAGCAGCAATGCAGCGTTCACTGTGATACACTTCTGCAGACAGAGGGTGTCTCTATTCCTGCACATAGCTGTGTGTTGTCTGCCCTCAGCCCAGTTTTTTGTAGAGCCTTTGCCAATGCTCCTTCACTTCCAGTGGGCCAGAGTAGACTAGTACAGCTGGAGGCAGTAGGCGCTCATGCTCTCCTGAAGCTGGTTGGGTTCATGTACTCAGgtgagatagagggagagagctTGGATGAACAGCAGGAAGTGATTAACATTGCCTACAAGCTGGGCTTCAGGAACTTTATGGTAGGGAAGCAAAAGCAGGTGAACAGGCACCAGAATAAAACTGCAAGTTGGAGAGAGATTGGACTGCAGACAGAAGAGAcaggagggagaaagaaagatgcaAGCATACAGATCCTGTCAGAGAAACAGAGTTTTTCTCATTCAGGCACTCAGACAGAGAGCACTGAAGCTGACTTTGCAGACACGTGTATTGCGTCAGAGCCAGAGGTGTCTATAGACCTGCCTGAGGAATTAACTGATGTTCCTAGCGAATATAACAGCATTTCTCCAGATGCTGGTCTTGCCTGGATAGATGAGATTGTTGCTCACTCTCCGTCAAACAGCGCTGAAGCGTTGGTTAGAGTGCAGGCCAAACCTAAGCAAActcaaaaggaaaagaaaagagcaaaaatttCAAAGAAGCAGGGAGGCACACAGATCTCACTGAAGATTAAACTGAAGAGGCAGAGGAGTGGGGCATTGTGGGAGATTGTTAGCGTCGAAGAGGAGAGTACAGTTGATGGATCAAAACCTTGTGGATCCTCTGATGACCCACCAATGACGCACAGTCTTGCTGAGACCCATAAGCGCTCTGTAGAAGTCCAGCTGAGCCCGTCTCACTCATTGACTTGTCAGAATCTTGAAACTGTCACGCTCACACCTCCCTCAGAGCTGACCACGCCTCTTCCTGCCACACCAACCAGGCCCCCTTCAGAGTACTTTCATCTCCATATCCCTGATCCTGTTCCTCTCTCCACGCCTTTACAAATGCCACCTCTATTACCGGGATTGTCACAGCCCGAAGAGTCTGATGAACATATTGCAAAGCTGTTAGAGATGGTCACAGTGGGTTTAAACAGCTTGCCCTCGGTCACAGTGGAGGGGGACAACAGCATGCATGCACACCTGGATCATAAATTGGAGAAGTGTGCAGCTGTAGCTAATTCACCAGCTTCATATCTTTGTTTGCTTGGCCATAATCTAGGAGCTATGGGATCTGGGACAACATCAGGCACTTCTGAAGAAAGAGAAGCAGGGTCTGAGGACCTATCTAGTTGCAGAAAATGGGATCTAAAGAATGTTGCATCAGTGGCAAGTTACCCAGCATTGCTCTCCTATACCTCCCCATGCATGacacagaagaaaaatattGATTCATCATTTACACCGTCATGCCCCGTAACAGACATTGTGCCATCCAGACTTACTTTTGGTACTGAAGGTCATGAGCATCAAAATGTAGTTGAGTTGAAGactgtatttaataattttttttgtggggCAGATACTTATGTACAGTCAGGGAAGCAGACTGTGAGTGAAGCCAGTGAAGAGAGTGATATACAAACTCAAATCTCAAGAACAGCTACAAGTAATGCAGCACAGGCTGATCCCACACCAGTAGGAAAACAGTGTCCAGAGCAGCTTCATGTAACAGATCAGGTGTCAGCCTGGCAGTCATCAGATGTTGGTCAAGCCCAACATCTGATGACTGATAATTGGGCAGATTTCAGCGAGATGAGACTCCCAAGATGTCTTTCACCTCTTACATTAGAAGCAGGCGAAACAACTGGTATGTCTGCCCAAGATCCTTTAAGACCACTGGAATTTTCTTCATGCCTTTCTGCATCACATGTCAACCACCAACCCGCATTGAGATACACATCTTCTCCAATTCAACCACAAGCACTTCCTGGCAAAACTAACCAACAGAATCCATCATGTACTTCTCTACATGTAAATGAGTTACAGTGCTCAGTGGTAGGGAAGAACTCATGCCCTTTAAGATCAAATAGAGATCACAATGGCGAGGCCAGTGAGTGTAAAtcagaagagaaaaagacaaaaatgacaGATTTTGAGAATGACCTGTTAAAGGGGACAGAAGACAACATActggacagacagatgaatgaatcagtagTCAGAGGAATATCTACAGCAAGTCACAGTGTTGAAACTGTTAATGAGCCTTATAGAAAAAAAGCTAAGATGGCTGGTTACCCAAATGGAGTCGATACACAAACAGTGAAGGTGGTAAATCCCTGCAGTGAGAAGATAAAGAATATAAGACACATTGACAACACACAAGACATTAGTAACTCTGTACCCTCTGAGAAAATGAATTGCCTGAAGGCAGCCAAGGCAAGGAAAACAGTGTCAGTAGATCTGAAATCTCAGGAGAATGTGGCACTCTGTCAGATAAGTCAGTCTTTCAAGTGTAAACGTCAAGAGGCATGCCAAAAAGATGATCGGGATGCAAAACAACCTGCCTCGTTGGTGGCAAAACGTGGACGTGGGAGGCCCCTTCAAAAAAGATCATGCGATAAAACACTGATGGAAGACTTAAGCGAAATAAGTAAACTTAACAGTACACCTGCAGTCCTTAACGCTTTGTCTTCTTCCAGCCATCACGACATACAGTTAACACAAATGAGCAAGGAGTGTGTACCAAGACATGTGAGTGGGAGCCCGCTTAAAGTAGAACATCCTTTAGGCCTTGCACAAACCACTACTAAAGTAAAGGATTTAATCAATGAAtgtgaaaagaataaaataccaGAACCAGAAATGGAAAAACCCATAGAGCCTGAGAAAGTTATTCCGGATGTGAACCTGaacagagaagaaaacaaacagctcAAAAGTTCTGCTAGTCTCTCTAAGAAAGCAAGTTTTTGTGATAAGATTTTCCATCAGTCTATTTTCAGTGTAGGCACCACTGTTACTCAGCATTTTCCACCTATTAATCATCAACTAAGATCAATTTTGCAGACAACTGATAGAAAAATCAGGACTAGTCTACCTTCAAGTCTCATGTGTAAGAAGCTCAGAGAACCTCCAGAGCCTGATCACATGAGTACCAAGTTAACGAAGGACAACAATAAACAGGAAAAGAAGGATACAACTGAAGAATGTGAGGTAGAGAGAGGTGTACGAGGAACTGATAAACCTGATGAAGTTTTAGACAAATCTAAAGATAATAAAGTGGATTCAGAAAACAGAGATGACAGTGAACAAGATGAAAATTcatccataaatgtaaatggatgtTTGGTGAATGGAAACTTTCTAAGAGAAGCTGATACTAATGCGAATACTGGTATATCCATTCATGATTCTGTTGATCTGAATGCTGCTTTTCATTTGTGTACAATCCCACCAGCAAGGGATTTTAACAATAATTTTGGGATGGAAAATAACTCGCAGCAGGAATCAACTACAACATTACTCCATCCGTTTAGACCTGAAAACATGATGGAGAAACCAAAAACAGATGAACAAATTACAGAAAGTCTTTGTGAAGTTCCAGTTTCTAATGAGCCAACAGAGATAAAATTAATCAAGACCAAAGAGTTGCATCTCGAAGGGACTGGGAGCACTCAAATTGGTAATATGGAAGGACAAGAAGTTtggaaaaaggagaaagaaaatgagaaaacagtAAGGAAACCAGAACGTGTAGAAATcagcagaatgaatgaatatgaagcTGGGATAAGTGATGTTGAGGTGGATGTGATGGATGAGAGCACTCAGCTTGCTACAGGTCGTGGAGATGAAGTGGTTGCTACAGGGGCTGATGTTGTTGATATTGATGTAGAGGAAAGCCAAATGTCTGTTGAGATGGATAATGATGGAGAAGCTCTTGCTCATGAGGAAGAATTAAATGGACAGCAGGTTCTAAGGACTGAAGTTGAAGTCATGCCACCAGATGAAGctacAGTTGAGATGACTTCAGAAGTTCTGAATCCTGAAGCATCCTCTATTCGACGTGGAGAGGAGCCTGATCTCAGCAGCGCCTCAGTCGATACCTTAGGTTCATCAGCAGTGTTTCTGCCTGATGTGAACACTGAATCAGCAGAGGACTGCAGCAGTGCTGAAGAGGAGCTTGTTGTGGATGACATCTCTGACTCTCCTCTTGAGCCATGCACTATAGTTGGTACTCAGTGCAACACTATTctggaagaggaggatgaattgaatgaggaggaggagggggaggaggaagaagaagaggttgATGTGACTGGAGAGGAATCAAATTGAACTCTTCTTGCACTTTGCAGGCATCAAAGTCTTTTCCCAAATGATGAACTCAGTGTAACAAAAAAGTTTAACACTGgtaaatttctgtttatttttcaggtatattattattgttaagattatgtatgtgtatttaaaaaCTTAATTTATGCAGATAGGTGTTGACAGTTTTAGTTGGATCAAttcatttgtgtatatttttctccTGCGTTAACAAAAACACCAATAActgtacattatttttgtttgtctcttGGTTAGGTCATTAAGTAAAGCCTACAGTCTCtagaaaaatatttctgtcataGTTCTGGGTAGGTTGTTTGGCTAAGATACATTGGTCTAGCTacacccctaggtgtgaatgagtgtgtcaatgtgtgtgagagtggtgccctgcgatggactggtgtcctgcGATGGAATGGCGTCCCATCTGCTGGGGAAAATCTCCTACCTTGTGCCCAGAGTTACCAggataggctcaggatccaccttgatc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU50831 lncRNA downstream 86434 8767988 ~ 8769186 (-) True G42987
TU50814 lncRNA downstream 100724 8754151 ~ 8754896 (-) True G42970
TU50741 lncRNA downstream 304265 8551130 ~ 8551355 (-) True G42914
TU50703 lncRNA downstream 362316 8493068 ~ 8493304 (-) True G42894
TU50701 lncRNA downstream 369610 8484155 ~ 8486010 (-) False LOC113539440
TU50882 lncRNA upstream 149618 9016202 ~ 9017636 (-) True G43029
TU51072 lncRNA upstream 450844 9317428 ~ 9341922 (-) True G43198
TU51168 lncRNA upstream 516124 9382708 ~ 9412002 (-) True G43270
TU51261 lncRNA upstream 650127 9516711 ~ 9517005 (-) True G43352
TU51431 lncRNA upstream 661932 9528516 ~ 9528727 (-) True G43509
XM_026935305.2 mRNA downstream 1805 8849102 ~ 8853815 (-) True timm10
XM_026934956.2 mRNA downstream 9706 8834391 ~ 8845914 (-) True unc93b1
XM_026935216.2 mRNA downstream 25374 8823867 ~ 8830246 (-) False crybb1l2
XM_034302976.1 mRNA downstream 26446 8823867 ~ 8829174 (-) True crybb1l2
XM_026935162.2 mRNA downstream 49367 8801231 ~ 8806253 (-) True rtn4rl2a
XM_026934878.2 mRNA upstream 2059 8868643 ~ 8893778 (-) False ctnnd1
XM_026934894.2 mRNA upstream 2059 8868643 ~ 8893778 (-) False ctnnd1
XM_026934860.2 mRNA upstream 2059 8868643 ~ 8893773 (-) False ctnnd1
XM_026934839.2 mRNA upstream 2059 8868643 ~ 8893773 (-) False ctnnd1
XM_026934886.2 mRNA upstream 2059 8868643 ~ 8893627 (-) False ctnnd1
TU50809 other downstream 1826 8801243 ~ 8853794 (-) True G42967
TU50810 other downstream 1826 8849109 ~ 8853794 (-) False G42967
XR_003403913.2 other downstream 71822 8755869 ~ 8783798 (-) False zdhhc5a
trnae-cuc_7 other downstream 385191 8470358 ~ 8470429 (-) True trnae-cuc_7
trnam-cau_4 other downstream 385563 8469986 ~ 8470057 (-) True trnam-cau_4
TU51003 other upstream 358297 9224881 ~ 9228884 (-) True sf3b5
trnag-gcc_1 other upstream 2842030 11708614 ~ 11708684 (-) True trnag-gcc_1
TU53378 other upstream 3278311 12144895 ~ 12152506 (-) False tmem254
TU53492 other upstream 3658052 12524636 ~ 12534075 (-) False LOC113537616
TU53486 other upstream 3664859 12531443 ~ 12534075 (-) False LOC113537616

Expression Profile