RNA id: XM_026934827.2


Basic Information

Item Value
RNA id XM_026934827.2
length 3554
RNA type mRNA
GC content 0.43
exon number 4
gene id LOC113539201
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 8946682 ~ 8952748 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCTCCGTCTCATGACTTCCGGAAGTGCATCTGGATGTATGCGTTAGAGATCAGAGGAGCTGCTTGACGTCTGCGTGACTTGAACGCACCCCTCCTGCTGTCAGACTCTGATGTGTCAGTTGTAAACTTCGTCCtgtgtgtaaaagagaaacCAATTCGTTAGTGTTAAAAGTTAATTCTAAATGCACCGGGTGCTATAATGGATGAGTGTGGTGGGTTTGAAACCCAGTTCACGTCTGTTATGCAAAATGTGCTGAGGACAGCAGTTGGTGAGGCGACGAAACTTTTCGAGGAGACTTTGCACCAGCTCAGAGCTGAGTTAGTGCACCTGAGGCAGGAGAACGTCGAGTTAAAGAGCGGCATTTTCACTCCTCACTTCAAGACAAAAGAAGCAGGAGATGGATGTCCAAGAGCAGAGCATGCCAAACGCGATAttggtgtacagtgtgAAAAGCCCACCATGGTTGAAAGATGCTGCAGCCCAGCACCAATTGGTGACCGTCTAAACTTGCGACACATCTCGAGTGAACGTCTTGAAGATCTCTGTTCCAGCAGTTCAGAAGATGGAAACAGGCAGCTTGCTTTGCTTCTCATAAAAAAAGAGcCTCAGGAGACTGACTGTGATGAATATGCACCAGGATACTTCTTACTGAAGCAAGAGGGTGCTGAGCCAATATTGGTTCGTAAAGAGCCCTTTAAAAACACCATGGAAAAAGTTTTGATCCCctcagcaatccaaacagtgaGCAGAAGCTATggaaaccaaaaacaaatatCAACCACTAATGCATCATCACCCAAGACCACTGTTTCCTGTAATTATACAATGGCCTCATCAAGTAACGGTGTCACCCAGACTGAAAGTATGTCTAGAGTTAGTGGATGGTCATCTTTGCAgagtgaaacagaaagacaaaaaaaatctgcatcaGCTAAAAAGTCAGCTTTGTCAGGGCTACCTGCTAATTCAACCCAGTCCCTTCCTCCAGTTAGTGTATCTGCCTCAACAGTCCTGCCTAACAGGCTAGGTCAGATGTCAACACCTAGAGCCCAGCAACCAGCGCCATCTGTTCAAATGGATGAGTCTCTTCAGGCAAGCATCCAACTTAGTGTACCTCCATCCCAACAAGTTGTTCAAAATATCCAGCATTCAGCTACAGTGCCACAGTTTGTCCCTAAACTGGTTACGCCCCCTCTCCCTCAAAACCAGAGCCCAATTACGGAATCTTGCCCCTCTGGTCAGTTATTACAAACCCTGGTTACAATTGCAGACAAAAGATTCTCAGTCAACAAATCAGTGACATCATTAACTGAATCTTCTACTCAGGCCACAAAGCCTTCAGTTTCTCACCCTCAAACTGTGATAACTCCTGTCCAGAACATGACACAGCTAGGCCATTTCCCATGTCCTCGGGTCCAGGCTCCTTTTCCTCCAGACCAGCATTCTGTTGCACAAGGACAGGTTCCTACTTCAGTATCTCAGCTTCCACCTCCACCAAACCAGGTCCCAATGCCACCCACCCAAGTCCCtgttccatccatccacctttCAATTCCAGCAACCCATGCACTATCTCAAGTACTTGTTCAATCAAATGACATACTTCCACCAAACTCGCAAAGTTTAAATCTACAAGGTCACCTTCCTTCTGTGCCTCATCATGATCTGACCCCATCAACCCAGCCATTTTATCCTTTGACTCATGCATCATTTGCTCCACCTTTCATCCCACTTCAGTCAATGAAGCCTTCTGTTCCTCCAAGTTCGATTTCCCAGACCAATGTTCCATCTCCACTGGAGCATGCCACATCCCACTATGACATTTTGTCTGATCCACTTTGTTCATCTTCAGACCAGTATTTTTCAACACCTGATAACACATCAGATTTGCTTCAGCCCTTGCCTCCCATGCCTTTCCACTCACCTGTTGTATTAAACCAGCAAGAAACCACATCTATGATCCATTCCCAATCATCTGGACAACCTTTGCAGCTTGCACCTCTTCTTACTTTGAAGGAACAGCAAGCAGCAGCCTCCAATCATGGACATATATCCAAGAGAGGACCTAACATGCCTGTGGAGATCCCTATGTCTACAGTTAATAACTTTGAGGAAGATATTCAGAGATATCCCCCTCTTGCTAGTCATGAATCCACAAACTGTGAAAGTGAATCCATCACTGTAGAAATGCAGAATGAAGACCCCACTGAGAATAATGAAGGTAGTAGGCCTGCAGTTATTCCTGGACCAATACAACATTATACAGTTCTTTCCAAGCCTGGGCCAAACTTTATAGTACCAGATTCTACAAAAGAACAACAGACCTTCAGAATGAACATGGTCAAGGATTTACAGATGGACAATGACATTAATAAGCAGAAAGAGGGATGTGACACAACCTGCCAAGTGTGGGAACCATCTGATTTGTCCAGTGTATTACCCCAGTCAGCATTAAGTGCTCCTGCACAAAACATAATACAGAAACCTGCACGGAAAGTGCTGGAAAAGAAGACTGAGTGCTCTGAATGTGGCAGGattctcagcaatgcatcttcACTGGAGAATCACATGAGGCTTCACAGAGGTGAGAGGCCATATACCTGCTCCCAATGTGGAAAGGCCTTCCCTAGTGTCCGAGGCCTCAACCGCCATGTAAAAGTCCATGCAGAGGAGAAAGGCTACAAGTGTGAGGAGTGCGGCAGGAGTTTCGTTTACCAGTTTACCCTGACCAAACACAAACTCATCCACTCTGGAGATAGGCCCTTCCCCTGTAAGGTTTGTGGCAAGAAGTTCTTGGCAAAGGCAGACCGGGCTACTCACATGCGCATGCATACAGGGGAGAAACCATTTTTTTGTAATCAATGTGGAAAAACGTTCAAGCATAGAGTTGCATTGAACATGCACATGCAGGGACACAGGGGGGAGAAACGCTATGTTTGCCCCCATTGTGAGAAAGGCTTTGTGGATTTAGGTAATTTTAAGAGACATAAGCGTATCCACACTGGGGAGAAGCCATTTGAATGCAAAGAGTGTGGTAAGCGTTTCACTCAGTCAGCCCACCTCAagaaacacatcaacacacaacaTGCGGTAGTGAAACCAAAATAGAAAGTTCATAATATGTTCATAACAATTAATTAAAGTTCATAATAACTCATGAGAAGAAACTATCACCAAATAGTTTTGTGAAAACAAAACTTATCTTGTTTTATTAGTTAAAAGTCATAGTTTTAGCATCAACTGCtgtataataatgcatttaactttttattgtagtacttttttttatctttttagtAAGTATGTGTAACTCTGTGgtgatttttttgtgaaaaagtaTCAGGTAGCATTGTCATTTATAATTCCAGGAAATTAAAAGACTAATGTTGTTTCTGTGctatttattattccttttttatAATATCCATGGGTTAAACCCTTAAGGAACTCAGGTTAAACAATTcactgtgaaaatgaaaatagtgCTGATACACTGATTGTGAACTTGATTTGAACATAATATGCcaacaaaaccaaataaaatgtgaaatgtt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU50844 lncRNA downstream 85174 8857258 ~ 8861508 (-) True G42994
TU50831 lncRNA downstream 177496 8767988 ~ 8769186 (-) True G42987
TU50814 lncRNA downstream 191786 8754151 ~ 8754896 (-) True G42970
TU50741 lncRNA downstream 395327 8551130 ~ 8551355 (-) True G42914
TU50703 lncRNA downstream 453378 8493068 ~ 8493304 (-) True G42894
TU50882 lncRNA upstream 63454 9016202 ~ 9017636 (-) True G43029
TU51072 lncRNA upstream 364680 9317428 ~ 9341922 (-) True G43198
TU51168 lncRNA upstream 429960 9382708 ~ 9412002 (-) True G43270
TU51261 lncRNA upstream 563963 9516711 ~ 9517005 (-) True G43352
TU51431 lncRNA upstream 575768 9528516 ~ 9528727 (-) True G43509
XM_034303001.1 mRNA downstream 20345 8909505 ~ 8926337 (-) False cabp2a
XM_034303000.1 mRNA downstream 20379 8909505 ~ 8926303 (-) True cabp2a
XM_034302998.1 mRNA downstream 21487 8909505 ~ 8925195 (-) False cabp2a
XM_026934878.2 mRNA downstream 52904 8868643 ~ 8893778 (-) False ctnnd1
XM_026934894.2 mRNA downstream 52904 8868643 ~ 8893778 (-) False ctnnd1
XM_026940775.2 mRNA upstream 145239 9097987 ~ 9129058 (-) True pgbd5
XM_026942296.2 mRNA upstream 191507 9144255 ~ 9148708 (-) True agt
XM_026933661.2 mRNA upstream 272128 9224876 ~ 9228793 (-) False sf3b5
XM_026932135.2 mRNA upstream 291793 9244541 ~ 9268345 (-) True oprm1
XM_026944059.2 mRNA upstream 397312 9350060 ~ 9379729 (-) True pcnx2
TU50809 other downstream 92888 8801243 ~ 8853794 (-) True G42967
TU50810 other downstream 92888 8849109 ~ 8853794 (-) False G42967
XR_003403913.2 other downstream 162884 8755869 ~ 8783798 (-) False zdhhc5a
trnae-cuc_7 other downstream 476253 8470358 ~ 8470429 (-) True trnae-cuc_7
trnam-cau_4 other downstream 476625 8469986 ~ 8470057 (-) True trnam-cau_4
TU51003 other upstream 272133 9224881 ~ 9228884 (-) True sf3b5
trnag-gcc_1 other upstream 2755866 11708614 ~ 11708684 (-) True trnag-gcc_1
TU53378 other upstream 3192147 12144895 ~ 12152506 (-) False tmem254
TU53492 other upstream 3571888 12524636 ~ 12534075 (-) False LOC113537616
TU53486 other upstream 3578695 12531443 ~ 12534075 (-) False LOC113537616

Expression Profile