RNA id: XM_026934860.2


Basic Information

Item Value
RNA id XM_026934860.2
length 5244
RNA type mRNA
GC content 0.47
exon number 20
gene id ctnnd1
representative False

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 8868643 ~ 8893778 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GAAGCCCCGCCCCTCGTCGTCGGGAGCGCGCAGAGAGGGAGGGGTTGGTTCATCACTTCTGCTCCGCTCCCGAGAAAAAACTGGCAACGAGGAAAAGAGGAGTGAACAAGGCGACGCGGAAGATAGCCTAGCTTAGtgtgtatGGAGCAGTGTGAGAATGCCGCGTCTCTCCTGGCGTCCGTGCGCGAGCAGGAGATGCAGTTTGAGCGTCTGACTCGAGCTCtcgaggaggagaggaggagcgTGGGGCCATCCGGCACCCTGCCCCGCCCCCTCCCCACGCTGCAGAACGGGCGTATCCCTGGTGATGCAGAGTTAGAGCGGCTCAAAATAAACGAGGGATACATCAACGGGACACAGTACAGGATGTTGGACCCAGGTCACCTTGTTGAGGAGACAGTCACAGTGGAGGAGGAACCCCAGGAGACCACACCAGTCATTTCTGTTGAAACTAGTGAAGATGGCACCACACGCCGCACTGAAACCACagtCAAGAAAGTCACTAAGACCACAACCACTCGCACGGTTATCCCCTCAGTCTCTGACACACTCTCTCTCGATGGCACTGGTTCTGTCACCGGTATGAGTGGTTATAATGCCCCTATAGACCGCGTGTACAGGCCTCCAGGACACATGGACTACCCAACAGCTACAGTCCCTCGAAATTACCACTATGGGCCACCAGGGGGTTACGATGACTACCGTAGTGGCCCGCCCTCTGAAGCCTATGCCAGCCTCAACCGAGGGGCCCGCATGGACGATcgctacagACCTGTGGATGGCTACCGAACATTGGACTCGGGCTACCGTGTCCACAGCAGGCCCCAACTGGACCCATATGCTGCCCAGCCACAGGTAGGGCGCATGGGCAGCGCATTGGAGATCTCTGGCCTGCAGCGATTTGTTCCAGAGCCCTACGGCCTGGAGGACGACCAGAGGAGTCTGGGATACGACGAGCCTGATTATGGTATGGGGCCCCCTATACACTACAGCACCATGCCCCGGCTAGGACATCATGCTCCGCCTCCACGCAGGACTGGatccTATGAGGGTACTCTGGATGGGGATATGAGTGGAGCAGGTGATATGTATTATTGGGGAGGCGGTGCTCCTCTGGCTCAGGGAGAAAGGGGAAGCATGGCTTCCCTGGACAGCACACTGCGTAAAGGCCCTGCCCCAACCACATGGAGGCAGCCCGAGCTGCCTGAGGTCATTGCTATGCTCAACTATCGTCTGGACCCAGTCAAGAGCAATGCGGCTGCTTATCTTCAACATCTCACGTTTAAAAATGATAAGGTCAAATCAGAGGTAAGGCGCCTGAAGGGCATTCCTGCTCTGGTGTCCATGTTGGACAACCCAAAGAAGGAGGTGCATCACTCCGCCTGTGGAGCTCTAAAGAACATCTCATATGGACGAGACCCTGACAACAAAATTGCCATCAAGAACTGTGATGGAATCCCTGCTCTGGTGCGCCTGCTGAGGAAGACCAGAGATCAGGATCTGACGGATACCATTACAGGGACTCTGTGGAACCTGTCATCTCACGACTCAGTGAAGATGGAGATTGTGGACCATGCGCTCCATGCGCTGTCTGATGAAGTGATGGTGCCACACTCAGGCTGGGAGAGAGGGAAtgatggaggagaggagagcTGCAAGCCCCGCCATCTGGAATGGGAGACGGCTCTCACCAACACTGCTGGCTGCCTGAGGAATGTGAGCTCAGAGAGGAGTGAGGCCAGGAGGAAATTAAGAGAATGCTCTGGCTTGGTTGACTCGCTCATGTACATCGTCCAATCCCAGATTAACTGTAAAGATGTGGACAACAAGTTGGTGGAGAACAGTGTTTGTCTTTTGAGGAATCTATCCTATCAGGTGCATCGGGAAGTGCCAGGTTGTGAGCGCTACCAGGAGACCGCACCTGTCAATCAAGGCCCTGCCCCTGCCAATCACAAGGGTGGCTGCTTCAGCTCCCGCAAGGGCAAAGGGAAGAAAGATGATGATGGAACCACAGACACAATCGACATTCCAAAGAGGACCACACCAGCCAAAGGTTATGAACTGCTTTTCCAGCCAGAGGTGGTTCGCGTGTACACATCACTCCTGAAGGAGAGCAAGAATCCTTCTGTTCTAGAGGCTTCTGCAGGAGCCATCCAAAACCTGTGTGCAGGCCGCTGGACCTATGGACGTTATATCAGGGCAGTTACGAGACAGGAGAAAGGATTGCCTATGATGACTGAGCTGTTGAGTCATGGGAACGACCGTGTGGTCAGAGCCATGTCTGGGGCCCTGAGAAACCTGGCTATTGATGCTCGCAACCGGGACCTTCTTGGAAAGCACGCTATACCTAACCTGGTGGCGAACCTGCCGGGTGGTGGGCAGAGCCAGCCTGTGCGTAACCTCTCGGAAGAGACAGTGGTTTCGGTGCTCAGCACTCTGGCAGAGGTGGTTGGCTCCAGTGTGGATGCAGCCAAGATCCTGCGCAGCTCACAGGGCATTGAGAGATTGGTGCTGATCAACAAGGATGGTAACCGTTCCGATAGGGAGGTACGTGGTGCTGGCCTGGTGCTGCAGATTGTGTGGGGATTTAAGGAGCTGCGGCGCACGCTGGAGAAAGACGGCTGGAAAAAATCAGACTTTGTGGTCAACGTGAACCCTCCCAGCAACACCCGCACCAACGGCGGCTACGAGGACAGCAGCACCCTGCCACTCATCGACAGAGGAGGAAAGCAGGATAGAGACAGAAACCTGATTCCACTGAATGACTTGGGATCAGACTCCTATGCTACACTGGACCAGAGAGGACGGAGGAACACTTTGGATGACACTCTAGAACCTGCAGAGAATGATATTCAgGGAGGGATGTATGGGGAGAGGCGGGGCTCCATGCCCTTGTTGGACTCTTACGACGGTTAGGCCACTCCCTCCCCTCACCCCACTCAGTGCATGAGCGAGCATGaaaAACTGATAGTGTGCATTACTCACGGCGAGCACCCTGTTCCTGCCTACTGTCCCTGCTGAACCTCGTCATGAAGGGACCACAGCCACTAATCAATGACGCAAAGAATCTCTTCCTCCATCATtatcccttctttctttctcttaccTTCTGCTTCTTGATCTGTCCCCTAAGATCCAAAAGACTGACTGCCACTACTAGGCAAAGactatgtagtcatttttttcttctggtaCTTTAAATCCATGccactcatttttttaaactgagaaaCACAAGAGACTGAAAAACACTACAGaactggagtgttttttttttttttttttttaaatcttttaatttttctcacattattttattctttaacacTACATACTGTGCATTGTGCCCTGAAATGGGTGAGATCGTTCATGTTATTTCTACATTATGATCTGGTTTAAGTCCTCCTGCTACATTGACAATTTTTCTTATTTGCTGACAACTTTATTCAACATGACGCTATACAGTAAGTGTTCTTGCTACCACTAAGTTTATGATGTTATTGTGTTGCCCCTTAATGTCTTGAAACACTAATGACCTTATTATaaatcttccatttttttttctttggaggTTATGTAGCTGTAAGATTGATCTGCATTtatgtttccattttttctGTGCTGATGAAAATTTATGCCAAATTACACCACTGTCTTGTgagttacatttaaaaacaaaaacttagTATATACATGATATTAAATCACCTTATAGAAGATTTTGGGAAGAGAATAGGGgtcattttgtaatgaaaacatttcctCTTACAATTAAGTTACCACTCTGCTATCTTTTGCAaacccccccctttttttttgggGTCATAATAACACATTGACACTGAGGATGTAGAGGTGTGAAGTAGATATTACTGAGAGGCAATAGGTTGAGGGATAATGCTTGTGGGAAGAGAAACCTGTGTTCCAGTTTTTGGTTGTCTATATTGAGCATCCATTAAGAGAATGGAaaggcatttttttaattttattttagagtAGCTCAGATAATGTCAAAGTGGGTTATTTGGGACATGACCACTTGGTTCCTAATTCTCCCCTTAGGCAGAGTTAACAGCAGAGCTGGTCCTATATTCAGAGCTGGAGCACTGTGGATTAATGTTGAGCCCTTCTGGAAAAAACAGCATGAATAAGAACAGCAGATCCACTCTTTGGGCCAGTTCTTGCTTTCTGTTTCCTCTCTGAATATAGACAGATGTGTAAATATGATGGCATATAACAAATCCACCATTCTTAATCAGAGTGCCTCACTCTTTGATCAGCCCATGgggcttttgtgtgtgtgagagagtgagtgactgtgagaatgtgtgtctgagtgtggctataagaagagtgtgtgaggtttaAAGAATTTGGCCTCCAGTGCCTGTTTGTGTTGCATTGGGAGTGAATGATGGAACATTGAGGGTGCGTTGGCTTTACATGATGAGCAAAGTGCTCCTTCTATAGACTGCGTATTCGATATGCACAGTGTCTGATGTAGATATTTGCTAAATGGATACTCTAGCACTAGGAGttaagtgttttttgttttgtttttttgttttgaacttttttttaaccccttcCCTTCAAGGGGATTTTCCccaaactgattttttaaacCCATCTTTTCCACCTATGTGAGACACTACAGTTGAGTATAATTATGTGACTAATTAAACAAAAGCATAGCTTTTAAGCAGGTATCCAGCAGCAGGCCAGCAGGCCACCCAGTGGGCGTTTTTGATTTTGAGGGAAGTGAAAGACTTTGTAAAATCTTGACACAATTTCATCTATTACAAGAAAAATTGAGGGAGAGCTCAGATTTTGATTCTAGCTTGATAtttagataaagaaaaaaattaaagcacatTTAACTATATATACCAGAGAATATttgttaattttaattatttgtttccTCTCAGTTTTGtcgttgtttctttttttttatattttatgattgGGATAGTTTGTTTTTTGGGAGTTATTGTGGGTGAATGCATATgcaatcaattttatttttaattcagtgcatttacagtttataccttaattaaaaacaaaaggaaaaaattgTTCGTGTCATGTATTGTTGTGCTACACTTTATATGCAACAAAATGGAATCATTCTCTTAATTTCATCTATCTGCCTTGGCTCTTAAATATCGCACCTTTGTTTCATGGATTAAACGTGTAACGTAGCAATACcgtttttaataaaagaatgatttttttttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU50844 lncRNA downstream 7135 8857258 ~ 8861508 (-) True G42994
TU50831 lncRNA downstream 99457 8767988 ~ 8769186 (-) True G42987
TU50814 lncRNA downstream 113747 8754151 ~ 8754896 (-) True G42970
TU50741 lncRNA downstream 317288 8551130 ~ 8551355 (-) True G42914
TU50703 lncRNA downstream 375339 8493068 ~ 8493304 (-) True G42894
TU50882 lncRNA upstream 122429 9016202 ~ 9017636 (-) True G43029
TU51072 lncRNA upstream 423655 9317428 ~ 9341922 (-) True G43198
TU51168 lncRNA upstream 488935 9382708 ~ 9412002 (-) True G43270
TU51261 lncRNA upstream 622938 9516711 ~ 9517005 (-) True G43352
TU51431 lncRNA upstream 634743 9528516 ~ 9528727 (-) True G43509
XM_034303130.1 mRNA downstream 1373 8855620 ~ 8867270 (-) False LOC113539142
XM_034303129.1 mRNA downstream 1373 8855620 ~ 8867270 (-) False LOC113539142
XM_026934706.2 mRNA downstream 1373 8855620 ~ 8867270 (-) True LOC113539142
XM_034303128.1 mRNA downstream 2059 8855620 ~ 8866584 (-) False LOC113539142
XM_034303127.1 mRNA downstream 2059 8855620 ~ 8866584 (-) False LOC113539142
XM_034303001.1 mRNA upstream 15732 8909505 ~ 8926337 (-) False cabp2a
XM_034303000.1 mRNA upstream 15732 8909505 ~ 8926303 (-) True cabp2a
XM_034302998.1 mRNA upstream 15732 8909505 ~ 8925195 (-) False cabp2a
XM_026934827.2 mRNA upstream 52909 8946682 ~ 8952748 (-) True LOC113539201
XM_026940775.2 mRNA upstream 204214 9097987 ~ 9129058 (-) True pgbd5
TU50809 other downstream 14849 8801243 ~ 8853794 (-) True G42967
TU50810 other downstream 14849 8849109 ~ 8853794 (-) False G42967
XR_003403913.2 other downstream 84845 8755869 ~ 8783798 (-) False zdhhc5a
trnae-cuc_7 other downstream 398214 8470358 ~ 8470429 (-) True trnae-cuc_7
trnam-cau_4 other downstream 398586 8469986 ~ 8470057 (-) True trnam-cau_4
TU51003 other upstream 331108 9224881 ~ 9228884 (-) True sf3b5
trnag-gcc_1 other upstream 2814841 11708614 ~ 11708684 (-) True trnag-gcc_1
TU53378 other upstream 3251122 12144895 ~ 12152506 (-) False tmem254
TU53492 other upstream 3630863 12524636 ~ 12534075 (-) False LOC113537616
TU53486 other upstream 3637670 12531443 ~ 12534075 (-) False LOC113537616

Expression Profile