RNA id: XM_026934907.2


Basic Information

Item Value
RNA id XM_026934907.2
length 3371
RNA type mRNA
GC content 0.45
exon number 17
gene id vwa11
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 8932174 ~ 8945247 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTTACGCATTTCTGGAGGAAGTTCAGAGTCAGCGTGGGATCTGTGAAGCTGAAGATGAGGTCATCGGTGTGCGTTATTGCTCTGCTGGTTCTGGTTCTGCCTGGCGTGCAGACATTTATGCCAGTAGGCAGTGGCAACACGCATGTGACCATCACCGGCAAAGCTGTGATGAAAAAGATCCATGAAGTATGTGAGGCGGTGGCTGAGTCAGAAGGAAGACCATTTAAACCATCAGGTTCCTCTGCGGAGGAACTGCTGCGTGCATGTTTGGGTACAGACACTGGTCAGGTGTCAGGTGCCAAGTTCCATGAAGCCCTGAATCAGATTTATATGCAGAATGGACTAGTGGATCGTGACTATGCGTCCAGTAATCCGCATCACTTCAGCAGTGAGGCTTTTAAGGAGGGACATTCTCTGATCAGCCAGGGTGTCGCCTCAGTCAAAGCCAGCATTCGTAAGGATAACTTACAGGCTGCTCGGGAAACACTGGGAAGAGTCTTACACACTCTGCAGGATTTTTACAGCCACACTAACTGGGTGGAGCTGGGTAACAAGAACATATATATCAACCTCATTAAACCAGATCTCACCATAGACAATGTTGCAGatgtggaCACCCCAACCTGCAGTGACTGTGCCAGTGGTACTTGTTCAAACCCTCTGCTGCCCTCCATTTTAAAAGAGAGGAAACTCACATCAGGATACATGGGCCTGTTTTCTCCCAGCAAACCTAAAGgtAAATGCAGTCATGGTGGCAATGCTGATCTTAGCAGTACCCAAAATCCTCGTGGTGGAATCAGCAAAGATGAGCGTCATGCCCATAACGCAGTCCTACACGACACCGCAGTCGCACTGGCAACAGAGGCTACTCTTGAGCTCCTGGAGGATATTCGTGGAGCCGTTGGCAATAAAAATTATCTCCGGATGATGGGCATTGCTCGTACTGCTGTCTTATGCTTTGTAATTGACACAACAGGCAGCATGTCTGATGACATCGCTGAAGCTAAGAGAGTTGCATACCAAATCATTGACACTAAGAAGGGGACAAAGGATGAACCTTCAGAATACATATTGGTCCCATTTAATGACCCGAgctttGGACCACTTATAAGGACAACAAACCCAGACACGATGAAGACTGAGATTTCTAAACTCGATGCTAAGGGTGGTGATGATGAACCAGAAATGTGTTTGTCAGGACTGCAGctGGCTCTGACTGGAGCTCCTGCCTCCTCTCACATTTATGTTTTTACTGACGCCACTGCAAAAGACATGCACTTAGAAAGAACCGTCATCGCCCTCATCCGCAGCACCAAGTCCACAGTCTCATTCTTCATGACAAAAAAGACGAGATCAACAAGATCTTTGAGTGCACAGGGACGCTCAGGTTTCCAGGTGTATTATAACTTGGCTTTGGCTTCTGGAGGTCAAGCTATAGAGGTCACTAAAGCCAATCTGCCCAGTGCTACTGAAATCATCTTAGACACCTCCACATCTGCTTTGGTAACAATCCTGCAGAGAGCCAGGAACCTAGGTCGTGTGGAGAATTTCCCTTTCTTTTTAGATGGATCGTTGTCCAATATTACTGCCTATTTGACAGGAAATAACCTCAAGTTTACTCTGCATAGCCCATCAGGTGTGTCTCAGCCTCACAGCACAAGTAATGGGCCTCTTGCTTCGATTCATACTGTGGGGAACCTGCAGCGGCTTGACTTCAGCAATTCAAATGAAACAGGCCTGTGGCGCATCAGCATGGAATCCACAGAAGCCTACACTATCAAAGTGACGGgtCAAAGTGCAATAACTTTAATTTACAACTTCGTGGAGGAATTCGGTGGACCCCACCCAGGATTTGCTATTATTGATGGTCGCCCACAGAAAGGCTTACCTGCTAAGCTGTTAATGACAATAACTGGACAGAAGGGTGCTGAAGCTCTGAAGCTACAGCAAGTTGCTCTAGTGGAAGTTTCAAATGCCAATGTGGCGAATGGAACCATCAAAGAATTGGGTGATGGAAACTTTCTGGTTACTGTGAATCAAGCTCCAGAAGAGGAATTTGTGGTTATGATAAAAGGAGAAGATAAGACCACCTCAAGCTACTTCCAAAGGCAGACCACAACACAGATGTCCCTGTCTAAAGTCACTGTCAAGGCTGTAGTAGGCACCGCAATGGTGCCAGGAAAAGACTTTATCGTATCTTTTACTGTAACTACTAATGGAACTGGTGGAAAGTTCGTAATCAGTGCTAAGAATGACAAAGATTTTCCTCTCACATATGACACCAGACTTACCGTGAACCCAGGAGGTAATGCTTCAGGCACAGTGACTATCAAACCTCCTGCAAGCACTGCGTCAGGAACCGATGTCACACTGACCGTTCTGGCTGAAGGGCCCGGAGCTGATGATTCTAACTATGCCGTTCTCCGAATGTCTGTCCTCGCCGAGGTGACTGACTTTACTCCTCCAAAGTGTCTGATTGTTGATGCTAGTGCTGTCTGTCCATCTGACTGCTCCCAGTCAAATTGGAACATGTCTGTCAACATCACTGATGGCGGTGGATCTGGTACTGAACACATCTCCACCCAGAAAGGCAGTGGCACACTCTCCTATGAGACTGTGGTGGATGGGGGTATAACCGTAGTCATGGGTTACTACAATGCCTCCTGCTGCTCACCTCATGTAATTGTAGCTGCTGTTGATAAGGAGGGAAATGTAGGGAAATGCACCTACTCTGTCCAGAGGAGCGGAGGGGTTTCCCTCagtctgtctcttcctctctgggCCTGTCTGCTGGTTTCAGCCCTGAGCATATTGCGTGCATAATGTGCTTCCcttgtaatgaaaaataaatagataaaaaagtaCCCATGCAACCACGTAAAaaccaaaatagaaaaaaagtatTCCCCAATGCAATGAAAATGTATAACACCACAGTGTTTAGGGTCAAATGTGAGTGACATACTATCATATTAttgtaaaaatttattttaaataagctACATTTAGTAAATTGGTATGCTGTGCAGTTCTATTTAAACCATGTTTAAACTGAACCTGTAAAATTATCCAGCTAAATGAGTTATCTATGTATTATGTGGAAAACTAAAATTTTGACTATTCAACTGTTCCTTCTGAAAATGGCTTGCTTAAACTCACCCTCACACAAtgcatttgttaatatttaagGCTCTTACTTTTCATGATCTTATGTTCTTTATCACCTGAGAGGACaaaggtgaaataaaagtgtgGTATTGTTTAATCTGAAGTACAGGGGTATTTTTATCACTATCCCATTCCCTCTTACCTCTTGCAAGGTTATTAAATTTCTTACATTCCCAACAGTATACACATCAACCACCAGGAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU50585 lncRNA upstream 61248 8812836 ~ 8870926 (+) True G42792
TU50573 lncRNA upstream 161111 8769324 ~ 8771063 (+) True G42783
TU50572 lncRNA upstream 164571 8764611 ~ 8767603 (+) True G42782
TU50545 lncRNA upstream 272613 8658225 ~ 8659561 (+) True G42763
TU50481 lncRNA upstream 281179 8611601 ~ 8650995 (+) True G42714
TU50628 lncRNA downstream 8275 8953522 ~ 8954026 (+) True G42833
TU50649 lncRNA downstream 67239 9012486 ~ 9015041 (+) True G42848
TU50999 lncRNA downstream 279116 9224363 ~ 9224593 (+) True G43137
TU51058 lncRNA downstream 398808 9344055 ~ 9345181 (+) False G43186
TU51055 lncRNA downstream 400183 9345430 ~ 9347236 (+) True G43186
XM_026935023.2 mRNA upstream 23607 8898290 ~ 8908567 (+) False slc43a3a
XM_034302997.1 mRNA upstream 23607 8898653 ~ 8908567 (+) True slc43a3a
XM_026935158.2 mRNA upstream 180328 8743828 ~ 8751846 (+) True tmx2b
XM_026934999.2 mRNA upstream 192424 8723908 ~ 8739750 (+) True slc43a1b
XM_026934770.2 mRNA upstream 219285 8675584 ~ 8712889 (+) True si:dkey-28b4.8
XM_026935011.2 mRNA downstream 10879 8956126 ~ 8961692 (+) True si:ch73-109d9.2
XM_026935034.2 mRNA downstream 18656 8963903 ~ 8967930 (+) True si:ch73-109d9.3
XM_034302892.1 mRNA downstream 23742 8968989 ~ 8981873 (+) False si:ch73-109d9.1
XM_026935116.2 mRNA downstream 23743 8968990 ~ 8981873 (+) True si:ch73-109d9.1
XM_026935106.2 mRNA downstream 23744 8968991 ~ 8981873 (+) False si:ch73-109d9.1
trnak-cuu other upstream 462478 8469624 ~ 8469696 (+) False trnak-cuu
TU50445 other upstream 465862 8465747 ~ 8466312 (+) True G42685
XR_003404394.2 other upstream 1266141 7649198 ~ 7666033 (+) False naa15b
TU49753 other upstream 1711151 7203950 ~ 7221023 (+) True G42075
TU48562 other upstream 3590424 5318534 ~ 5341750 (+) True G41047
TU52056 other downstream 1607012 10552259 ~ 10558295 (+) True sprn
XR_004577889.1 other downstream 1649327 10594574 ~ 10608704 (+) False LOC113543929
XR_004577793.1 other downstream 2154346 11099593 ~ 11171114 (+) False dntt
trnag-ccc other downstream 2646088 11591335 ~ 11591405 (+) True trnag-ccc
XR_003404598.2 other downstream 2737617 11682864 ~ 11726772 (+) False LOC113545306

Expression Profile