RNA id: XM_034303006.1


Basic Information

Item Value
RNA id XM_034303006.1
length 3976
RNA type mRNA
GC content 0.44
exon number 19
gene id ssrp1b
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 8654162 ~ 8675424 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gttgttgctgttgttgttgttggattttttttgtatggaaTAGACTCAAACTATGTCCATTTGAAGTATTTTAGAGCTAACATTTCAGAGCTTTCTTTCTATTGGGATAATGGTGCGTTTCTGactgcagggttgccagattggagtGATTTTCACTAATCCAGCATCAAACTGTAAATTTGCTATATTAATACTAAactctaaaaaatatataacgtGTGTATGATAAATAAACTCATACATCTTTAGCATCTGGACATTATCCTAATTCTATTCGACTATAATGAAAAATACcctgatttaagaaaaaaaaaatctggcaacatTGTGCAGTTCACACAGACAACGTCATACAATgcgttgcataagtattcaccccccttgaactttgTCATATCTCATACTGTTACAGCCTGGAACTGAATTTGACTTAACTTGGATTAAAGGTCTTGAATCTACACACCATAGCCCATTACACTGAAATGGGGtttgtaaaattattaaaagtcataaaagttgtgattgcataagtatgcaccccattgctgtgaaatcCCTAACTTAGCTGTAGTGCAACCAGTTTCCATCTGAAGTCACATAATCAGCTGAATGGAGGTCACCTGTGTGCAAGTCTTAAAGTGTCAcgtgatctcagtataaatacacgtGTTCCTGGAAAGCCCGATATatacgcgcacgcacacacacatatatatatatatataaaacagcataatgaagaccaaggagctaccATAGGATAGTACCAGTAATGGTTatgttacaaacaaacaaacaaaagtccTGGAGAGCAtcagaatatggcacaaccgtGACTCTGCTTAGACAGTGACTGTGTAAGGAGGGCTTTTGTTGAAGAATGGACCCGGGAAGCCATGGGTTACTCTCAGGATGATgttaccaccaccatgcttcactgtaaagATAGTGTTCTCAGGGTGACGAGCACTGTTGGGTGTCCGCCAAATGTGCCTGTAAAGTCAACCTAAAAAAACCTCTTTTCTTCAATTCTACAGTTTGTCCATGTGTGTATTCATTATTATGAACCATATGATGCTGTGTGTCATTTGACAAAAAATCCAGTATTGTCAGCATGGTCTACAAGTAAGGGTGGGTAGGACATGGTGCCTCAAGGCCAATCTGACCCAGTTCAGCAACCATAATTATCTGTCCTTATAGATGTTGCTAATTACTATCATACTCTCTTGAGGATTCATTCTTGTATAGATATAAGACTATATTTATCAGACCATCCCCCCACAACCTTACTGTTAAGAGAACTCCTTCTTTTGttcttgatcttttttttctctttttccatgATGAGAGCATATATAATAGCTGTCATCCTGGACCACCCCATAGCCCACGCTGACTGGTCTGGCTAAGGATGGCTGGAGAAACCGCGCATGCTATGATTTGCTGTAAGAAATTGTTATTAAGATTGTGATCATTCCTGGGACGTAAGAGCGAAGTTGCTGCCATGACTGATGTTCTGGAGTTTAGTGACATTTATCAGGAGGTCAAGGGTTCCTGGAATGATGGGCGTCTGCGATTCAGTAAGCAGATGGTGGTGTATAAAAGCAGTAAGACGGGCAAGGTGGACAGTATCCCCGTCCCAGAGCTCAGTCAGGCCCAGTGGAGGAGAGTCTGCCTGGGCCACGGCATCAAACTCTCCACCAGCACCGGACACGTGTACAAATACGATGGCTTCAAAGATACTGACTTTGAAAAAATCTCTGAGTATTTCAAAGATAATTACAAAGTGGAGCTGACCGAGAAAGACATGTGTGTGAAAGGCTGGAACTGGGGCACTGCTAAATTCAACGgcCCATTGCTGTCGTTTGAAGTGAGTGACACTCCTGTGTTTGAGATCCCGCTCTCCAGTGTATCCCAGTGTACCACTGGAAAAAATGAAGTCACCCTAGAGTTTCATCAGAACGATGATACAGAGGTGTCACTCATGGAGGTGCGTTTTTACGTCCCGCCCACTACAGGAGATGAGGGGGCGGACCCTGTAGAgGCATTTGCCCAGAATGTTCTTTCTAAGGCAGATGTGATTCAGGCTACAGGAGACGCTGTGTGTATTTTCAGAGAGCTGCAGTGTCTCACACCCAGGggaagGTATGATATTCGTATCTATCCCACCTTCCTGCATCTGCATGGTAAGACGTTCGACTACAAGATCCcctacaccacagtgctgcgcCTCTTCCTGCTCCCCCACAAAGACCAGAGACAGATGTTCTTCGTGATCAGTCTGGATCCCCCCATTAAACAGGGACAAACCCGCTACCACTTTCTCATCCTGCTATTTTCCAAGGACGAAGACATCAACCTCACCCTCAAcatgagcgaGGAAGAGGTAGAGAGGCGATTTGAGGGAAAGCTGACTAAGAACATGTCTGGCTCTTTATATGAGATGGTCAGCAGGGTTATGAAGGCTCTAGTCAACAGGAAGATCACAGTACCTGGAAACTTCCAAGGTCACTCTGGTGCTCAGTGTATCACTTGCTCCTATAAGGCCAGCTCAGGGCTGCTGTATCCTCTAGAGAGAGGCTTCATCTATGTTCACAAGCCCCCGGTACACCTGCGCTTTGAGGAGATCGCTTGTGTGAACTTTGCCAGAGGCACCACAACTACACGCTCCTTTGACTTTGAAATTGAGACCAAACAGGGCAACCAGTACACCTTCAGCAGTATTGAGAGagaagagtatggaaagTTGTTTGATTTTGTCAATGCTAAGAAACTGAGCATCAAGAACAGAGGCTTCAAAGAGAAAAAGGGTATGAAGGTCAGAGACGAGATGTACAGTGACTCAGATGACGATCAGCATGACGCTTACCTGGAGCGCATGAAGCAGGAGGGGAAGATCCGCGAGGAGGCCAACGACAGTGATGACTCAGAGGCTGGCAGCGATGAATCATTTAACCCtggagatgaagatgatgatgttgCAGAAGAgtatGACAGTAAAGCCTCAGCCAGTGAAAGTAGTGCTGAAGATGCAGACAGTgaagaagacagaaagaagaaaccAGTCAAGAAGGCCAAAACTGTCAAGGAGGGAAAGCACAAAAAAGAGAAGAAGATGAAGGACAGCAGCGCCCCCAAGAGGCCAATGAGTGCCTATATGCTGTGGCTGAACGCCAGCAGAGATCGCATTAAAGCAGAAAACCCTGGAATCTCAGTCACTGAGATTTTAAAGAAGGCCGGTGAGATGTGGAAGCAACTGAGCAAAGACAAGAAAGAGGAGTGGGAAGGGAAAGCTGaggaagcaaagaaagaatACGAGCGAGCGATGAAAGAGTACAGAGAAAGCAGTGGAGGCACCTCGAAAAAggcaagaaagaaaggaggaaagagtgaggagaggaagaaaaagaagttaggtggaggaagggagagagagaggaacagggTAGCTGGGAATGACAGCTTTAAGAGCCCAGAGTTCATCTCCAGCGAGGAGAGTTCGTCCGAGTCCAACCGGGGAAAGGGCCGCAAGCGCAAGGGCTCGGATGATGAAGAGAAGCAAGCAACCAGCACTCCCAGCTCAGAAGAGTCCGGCTCAGACTGAGACACTAGTGGCAAAACAGAGCAGGAAGGAAAGAGACAGGATAATGGAGTCATTCTGTCCCTGTCTCTTAAGAACCccatatgttttctttttcatattctCTCTCCATGTTATCCTCTCTTTCCTTGTCTctccattttattcatttcagtatatattctactgtatataacacaagCTAACGAGTATTACTGGCTAACCTGCTTAACTTTGATGTTAGAATTTTTAGCAAGTAGCATATGTTGTGTAAATACAGTGGAgttcaaaagtctgagaccacattgaaaatctgggattttttttaaatttataactggaaataaatagaaacgCTTAGAATTtggaaaattctaaaacaaaaaaaggaaatgt

Function

GO: NA

KEGG:

id description
K09272 SSRP1; structure-specific recognition protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU50741 lncRNA downstream 102807 8551130 ~ 8551355 (-) True G42914
TU50703 lncRNA downstream 160858 8493068 ~ 8493304 (-) True G42894
TU50701 lncRNA downstream 168152 8484155 ~ 8486010 (-) False LOC113539440
TU50426 lncRNA downstream 273447 8380340 ~ 8380715 (-) True G42671
TU50420 lncRNA downstream 354718 8299180 ~ 8299444 (-) True G42665
TU50814 lncRNA upstream 78727 8754151 ~ 8754896 (-) True G42970
TU50831 lncRNA upstream 92564 8767988 ~ 8769186 (-) True G42987
TU50844 lncRNA upstream 181834 8857258 ~ 8861508 (-) True G42994
TU50882 lncRNA upstream 340778 9016202 ~ 9017636 (-) True G43029
TU51072 lncRNA upstream 642004 9317428 ~ 9341922 (-) True G43198
XM_026935129.2 mRNA downstream 8058 8638417 ~ 8646104 (-) True p2rx3b
XM_026935196.2 mRNA downstream 27773 8624566 ~ 8626389 (-) True tmem187
XM_026935239.2 mRNA downstream 37313 8612061 ~ 8616849 (-) True ndufs8a
XM_026935173.2 mRNA downstream 43318 8605089 ~ 8610844 (-) True zgc:165520
XM_026934765.2 mRNA downstream 52472 8582190 ~ 8601690 (-) False kdm2aa
XM_026935207.2 mRNA upstream 64076 8739500 ~ 8743565 (-) True med19b
XM_026934919.2 mRNA upstream 79490 8754914 ~ 8783798 (-) True zdhhc5a
XM_026935162.2 mRNA upstream 125807 8801231 ~ 8806253 (-) True rtn4rl2a
XM_026935216.2 mRNA upstream 148443 8823867 ~ 8830246 (-) False crybb1l2
XM_034302976.1 mRNA upstream 148443 8823867 ~ 8829174 (-) True crybb1l2
trnae-cuc_7 other downstream 183733 8470358 ~ 8470429 (-) True trnae-cuc_7
trnam-cau_4 other downstream 184105 8469986 ~ 8470057 (-) True trnam-cau_4
trnam-cau_3 other downstream 185020 8469071 ~ 8469142 (-) True trnam-cau_3
trnam-cau_2 other downstream 186055 8468036 ~ 8468107 (-) True trnam-cau_2
trnam-cau_1 other downstream 187107 8466984 ~ 8467055 (-) True trnam-cau_1
XR_003403913.2 other upstream 80445 8755869 ~ 8783798 (-) False zdhhc5a
TU50809 other upstream 125819 8801243 ~ 8853794 (-) True G42967
TU50810 other upstream 173685 8849109 ~ 8853794 (-) False G42967
TU51003 other upstream 549457 9224881 ~ 9228884 (-) True sf3b5
trnag-gcc_1 other upstream 3033190 11708614 ~ 11708684 (-) True trnag-gcc_1

Expression Profile