RNA id: XM_026934966.2


Basic Information

Item Value
RNA id XM_026934966.2
length 3737
RNA type mRNA
GC content 0.41
exon number 10
gene id si:dkey-9i23.6
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 8626903 ~ 8634451 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ctcttctgggaaggttttccactagatctTGGAGCATGGTtgtagggatttgtgctcattctgcCACAAGAGCGTTAATGACGTAAAGGGTGAGGAgacctggtgtgcagtcagagttccagttcatcccgaaggtgttcagtggggttgaggtcagtgctcTGAGCAGGACACTCAGGTTCTTCCAGACcgatcttggcaaaccatgtcttcttggcgctcgctttgtgcacaggggcattgtaatgctggaacaggtttgggccctttagttcaagtaaagggaaatcttaatgctacagtatgCAAAGACACTCtatgcaattgtgtgcttccaagtttagggaaggcccacatttgggtgtgatggtcaggtgtccacgaacctttggccatatattgtgtgtatatatacaccttCTACACATGGTTTAGAGTTGACATATGGTTTAGAGTCTTTTATTTTGACAGGTATTTCCTGCATGTAACATGTAACGCAAAGCCAACGACAAGCTCTGGTCTGCTGACCAATCCAAACAAAAAGTTATTCAATTACTTAATAATATAATccacaataattttaaaaatcatgaaaaacTGACAGTGTTGCTGCATTTGACTCAATCATGGAGACTTTTTCCTTATGAGGTTTGGTATAGGTTTAGCTACACTCATCACAGCGCATTACTGCCACCTGGTGGCCACAAAAAGTACAGCGTTTACTTCATACTGGAGTGGAATGGTGTAGTTCAGTATGACAGATCAGAAATACTGTGAATAAACTCAACATTAGAAGTGAATAGACAGAATTATCACGGTAAAAGAGGTTATAAGGTAGTGGTGGCTAATGATTGGAAGACTGAGGTTTCAGATCTCTGAACTAGCAAGCTATGCAAAGACAACCAATTTGTTGGACTGTACATAGCATGTATGTATGCGTAATGACCATAACaactgtctttctttctatacTGGGTATATTTGTGTATGAGCTGGACTACACCACTGGACTGTGCCATATTTGATCATAcctaattcttaaaaaaaaaaaaagtctggaagAATATGCAAGAGTGTGAttactgtgtgtgcatgaaagTGTGTgcgagaaacaaagagagaggaaaattcAGAGAGGACGAGGAAGCTAGCCAGTGACTCGAACTACTATGCTTTTAATATTCATCGTCTTCATCTTGAGTGACTGCcttatcatggtcagggtcatggtgaataatttcataattcataatttctGTACTAAGCAACCGTGGCACTGATTTATCATGTTGTACCTATGTTTATAACTTGACCAACTGTAATTTGTGGAATGTAAAAGAATGGCATTTGACAGAAAACCTGTATGGGTGGTTTCGGGAGCCACGCGAGGTAGTAACAGTCATGAACTAAAAAGCTGGTACAGTAAACACTGCTAGAGGCAGCGAAATGGGAGGAGATAAACCCATGGAGTCTTGACAGAAAGTTCCTTAAGCAGTAAAGAAGGAAactggaaacaggaaaaagagaggTAAAGCAGTAAAGCAGGACACCACAGAAACAACAGAAGCGATGACTGAAGAAAGACAGGCATCCAACAGCAGCATCTCTATGCTTCACTCTATGCTGAACCGACTGAAGTCTTCTGAGAGGATCCAAAGTTCTTCTCATGCCACAGCTCAACACTGTAGACACTCAAAGGACAAACACCAGTGTGACAGAGTATTTATCCCAGAGTCAGACAAACCGGAGTGGAATTTTGCAGGGTCAAATCCTTCAGAACACTCAGTCAAGCCCGAGGAACAGAATGATGCTGATGTAGATTCAGAATATTTCACACAGAGGACTGTTTTTCAAGAGTCTAGTCCTACTTCAATCACATTTCTCAAAAGCACAACACCGTCTAATTTGTTGCACAGCTTGACAAGAGACGCCAGTCAAGACTTACAGCCCAGTGAGAGTAATCCCTCCCAGGAAGAAGTGAAAGAGGAGCAGACATCACAAGCTGAGTCCCATTTCAACATTCTGAAGAAAAGTCCTCCTCATGGACCATTTACCCATGACCCAACAGGATCCTCCCTGGCAAACTCAGAACCCAGGTTTGTCAAAGGAACAACTGTGCCAATGGAGTATAAAATAATGAAGCAACCTTGTGAGAATACAGTTACGTCTGTGGAGGAAGCAGAGCCTCCACCCCTCCCTCCTAAACTGCGGCATCTCAACAATGTGCATGGCCAATTACAAAGgaCTTTTACTCTAAAAGATTTCAAGCTGGACCTCGAGCCCATCAACTTGCTGGAAGAGATTTGTACAggagaagaatgggcaaaattCCTGCCTGTTAAAGATTCCCCACCCCAAACAGATGCCAAAGACTACTCGCAGACAGAGGATTCTCATCATTCAAATGATGATATCGGATCTCAGAATGCAGTCATAAAGCCGGGCCTATCAGCAGACAAAGAGCAGTCAGAGATAGGTTCTAGTCCAGCCAGTATTACTGATAGTCAGGAGGACAGGGTAATCCAGGTCAGACAAGGAACATCTGATTCACCCATTTCTGCTTTTCCCAAAACACCAATAAGAAATGTTACAGTAACACAAAGGACATCTGACATGCCAGAATATGAACGATTTAAAGCGGAAGAAAATGACCTTGTGGtaatgtatctgcatgatgaaAATGACCTGACAAAGGTCAAGAACATGCCACTTGATTTGTCTGTTGTCAAGTCATCAGGAGTACTAGATAATTCTGCACTAAAGAGTCGAATTCAActgagcaaaaaaagaaaacatcaaccaacagaaaaaagaaaaaaagGAAAAACCCAAATGGACTTTCTTCACCAACGCAGTGCCTCCACAGAGTCCTTTCAGTCTCCCCCTTCTTCACATACTTCTGTCTTTGCCTCCtctaaattttatattttacccTGTTCAAAATTCAAAGACTCCCAAACACATGAAGATTCCCAAATATCTGTACTTGGTAATGAGAAGGCACTAGTGAGAAATGCTGCAGTACTGCAAAGGATATCAGAAGTGCCAGAAGCCTACAGCAATGATAATGACATTGCAGAAGTTTCTGTGCTTTATAAAAATAAGCAGCTATCATACAAGATGAGGGATATGCCCCTTGATTTCTCTGTTGTCAAGTCATCAGGAGTGCTAGACAATTCTGCTCTGAAGGATCGAATCCAGttgagcaaaaaaagaaaacatcgaCCAccagggaaaagaaaaaatgAGTCCTTTCAGTCTGACCATTCTTCACATCCTTCTATCTTCACCTCCTCTGCATTCCATAATTTACTGAGGTCCTGTGATTCCAACGATTCCCAAACATCTGTTCCTGAGAAGcaaaagacaaaagaaagattATTGAAACCAAAGCTATGGAAGATGAAGTCCTAATTCATTTCTGGAGAATGTAACAGGAACCAGGGTTACGCTGGTCCCCAGTATGCATGTGACCTGGAAAGGAACTGAAACCTACAgccatataaatataaatactgtatataccttttttttttaaagctgcttaTTTATAAGCTGAATTAGTGAAATACATTAGCCATTTAGAATGAAATGTACAGTGTTCTCAAATGTAGTTGTTCAGCTAagacatacactgatcagccataacattatgaccactgacaggtgaagtgaataatattgattatctcattacaatagcacctgtcaagggttgagatatattaggcagcaag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU50485 lncRNA upstream 73521 8552711 ~ 8553382 (+) True G42718
TU50484 lncRNA upstream 75019 8551498 ~ 8551884 (+) True G42717
TU50449 lncRNA upstream 157022 8469629 ~ 8469881 (+) True trnak-cuu
XR_004577904.1 lncRNA upstream 198262 8425810 ~ 8428641 (+) True LOC117596914
XR_004577894.1 lncRNA upstream 354998 8270410 ~ 8271905 (+) False LOC117596904
TU50545 lncRNA downstream 23774 8658225 ~ 8659561 (+) True G42763
TU50572 lncRNA downstream 130160 8764611 ~ 8767603 (+) True G42782
TU50573 lncRNA downstream 134873 8769324 ~ 8771063 (+) True G42783
TU50585 lncRNA downstream 178385 8812836 ~ 8870926 (+) True G42792
TU50628 lncRNA downstream 319071 8953522 ~ 8954026 (+) True G42833
XM_034301424.1 mRNA upstream 3496 8618725 ~ 8623407 (+) True si:dkey-9i23.8
XM_026935055.2 mRNA upstream 80165 8536839 ~ 8546738 (+) True LOC113539337
XM_026935045.2 mRNA upstream 80165 8536839 ~ 8546738 (+) False LOC113539337
XM_026935228.2 mRNA upstream 92868 8530455 ~ 8534035 (+) True LOC113539481
XM_026935251.2 mRNA upstream 109673 8511977 ~ 8517230 (+) True tmem176
XM_026935289.2 mRNA downstream 36347 8670798 ~ 8673429 (+) True pold4
XM_026934770.2 mRNA downstream 41133 8675584 ~ 8712889 (+) True si:dkey-28b4.8
XM_026934999.2 mRNA downstream 89457 8723908 ~ 8739750 (+) True slc43a1b
XM_026935158.2 mRNA downstream 109377 8743828 ~ 8751846 (+) True tmx2b
XM_026935023.2 mRNA downstream 263839 8898290 ~ 8908567 (+) False slc43a3a
trnak-cuu other upstream 157207 8469624 ~ 8469696 (+) False trnak-cuu
TU50445 other upstream 160591 8465747 ~ 8466312 (+) True G42685
XR_003404394.2 other upstream 960870 7649198 ~ 7666033 (+) False naa15b
TU49753 other upstream 1405880 7203950 ~ 7221023 (+) True G42075
TU48562 other upstream 3285153 5318534 ~ 5341750 (+) True G41047
TU52056 other downstream 1917808 10552259 ~ 10558295 (+) True sprn
XR_004577889.1 other downstream 1960123 10594574 ~ 10608704 (+) False LOC113543929
XR_004577793.1 other downstream 2465142 11099593 ~ 11171114 (+) False dntt
trnag-ccc other downstream 2956884 11591335 ~ 11591405 (+) True trnag-ccc
XR_003404598.2 other downstream 3048413 11682864 ~ 11726772 (+) False LOC113545306

Expression Profile