RNA id: XM_026934975.2


Basic Information

Item Value
RNA id XM_026934975.2
length 2817
RNA type mRNA
GC content 0.45
exon number 8
gene id si:ch211-89o9.6
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 8456728 ~ 8464439 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CGAGGGTCCTCGACGTCACTACTACAAGGCAGCCGGAAGTCTCGTGACGTCACCGGCGAACGGCAACAAGACGACGGTGTTGCAACAATACGGTTACATTTTATCAGCAAATCACTGTTCTGGCTTTATTTTCATACTAAAAGGAATTCAAGCGAAACGGCTCCTTTTCGCATACACTGAAAGAAACGACGGCTGTGTGTCGTTTCCGGTGGCTTTCATTATGTCGAATCGTCTGGCCTTTCAGACTCAGCTAGCCTCCATCATGGAGGTGCTGGCGAACGCAGCCGTGGCAGAAATCTGCAAACTGGTGGACGATGACTACGCGGTGATTAATCTGCAGATGTCTCAATGCCAGCGCGAAAACAAGGCTCTGAAGAGGAAACTCCATCTGATGGAGCTGCGAATGGCCCGAGGTTACGCCGAAAGGAGAATCCGCGAAAGCTCAGGAAATCGCTCCAATAGAGTCCAAGTGAGCGCAAATCTATCAGACAAATACAGAGCTCCTGTAGCTGacatttttccaaatcaagATGAACTCTACGGGAGGCAGTTAAATGAGGATGTTTGGAGAGATGGGGAACCTTCCAGTGCAGATGTGCAGATTGGGCATCCAGTCATCAAACATGATGAGAATGGGCATGAAGACTCCAGCCAGGCTGGACCAAACGCTGTACTTGTTAAGGCTGAGACATCTGATGAGGgccacacacagcagcaactATTCATTCGAGAAGATGGAGTGGCAGAAcctgtgtgtgagggtgtggaggcAGATTATGGTGCTGCTCATGTGGATAAAGTGGATGGTCAGAACTCCAGGACGCGGCACGAGGCTTTGGAGTGCCAAAAGACAGATGACGAAGAGCCAGACGTGCTGTTCATCAAGGAAGAGCATTCAGAGCTGGAGGAGCAAGAAAGCCAGACACATGGTGGCATGACCCTGCAAGACGGATTTGTGGAGTCCAGCACGGACGTTTGTGGAAATGGAGTCTCTTCCTCACCTGCACAGATCACATTAGCCCTCAATGTACAGGAGacTCATGAGCTGGAGTCATCCCTTGTTAAGGGTGAAAGCAGACTTCAAGAAGAACACCAGGGAACTTCCAGTCAGGCAACAGACATGCAGATGACTATACAGAATGTGGTAGACTCCCAGACTGCTGGGTCTCTGTGTTCACGTGAGTCAGTTCTTCCTCAGAGAGAAGTCAAAGTGTGGGATATCTCCACTTCCCAGTCTCATCTCCAAGGGCCAGATGAGAGCAGCAACATCCCACTTTCAAACCAGAATGCTCAGAGAAAAATGGTAGTGTCTGTCGATGTGCTAGGGACAAATAGTACACTGTATGAGAGAGCAAAGGACATGGAGAGTTCTTTTCCACGATGGGCTGCGAATAGCCCCTCTGACAGTCAGCCATCTTGTTCTTATATTGTGGAAGTAGAGCAAGACCAAGACTGTGTTCTGGTGCAGCCGGGACCTGTGTCTGTTAGGGGTAGGCACAAAGCGGCTGCATCAAACAGGCTTCAGGATGCCAGAGGGCTTCATAGGGTGGAGGCAGAGTGGAGCACGGTCACTGCTTCAAGCCAAGCCCATACTCAGCAGTTCAGTCACTTCAACAGGACTCGATTAGATGCAGCAAACCGAGCAAATCTCACTCAGGCTGTTCCAAACTTGCCACATGCTGGAGTTTCTCTTGCTGGGCTACAGCTTCCAAGGCGCATGGAGAAGGGCAAAAGGAAAAGTTATATCTGCAGGTACTGTGGAAAAGCTTTTACTGGGCAGTCTAACTTAGAGGCTCATCAACGCATCCACACTGGAGAGAAGCCTTTCAAGTGTGAGACCTGTGGGAAGCTCTTTACAGAGGCAGGAAACCTGAAGAAGCATCAGAGAGTTCATACTGGAGAGAAACCGTTTGTGTGTAATCGCTGTGGGAAACGTTTTGCCTGGATCTGCAATCTCAGGACACATCAGCAGTCAGCTTCCTGTGGGGGAGTGTAAGGCAAAATCTGACCTGATCACTTGCACTGAAAAAGTGCAAATATTCACACAAAATCTGTGTGCTTGGTAAAAATGGTTGGATAAGTGGAATCAGATAGATCAGATTTAGTAATTATTAGACAATGACAAAGTGTTTAAACACATAGTGATAGAAAACTGCAGTGTGcagtagggctgggcaatatggcaaaattattttaatatcttgATATAATAACATCATGATACCcttttttaatatcattagCTGTCAGTACTTTTATAACTCCTTTGTTACTCTGAAATGTAACTGACTGGCCATTATTTTGTACCAGTTTCATTTCCacctcttttttcctttccatcaAATGCTTCAGACAAAAATCTGTGAACATATAGTAGCTTGTGTTGGCCTTGTTGTTTGAACCTCAGCAAAATTATATTGTGTATCATGAAGGTGTctttaagtatcatgatatgatatttttgccgtATCGCCCACCCCTAGTGTGGATGAGCGAGGATGAACAGAGTTTGAAGTTGTATAAAACACATGGTGCTTTCCTCTATATTGGTTTGGTGCCTTAATTGTTACATGTAGACTTGGTCTGATTTCAGAAATTGCAAACACCATTCTACCTCTTGAATTTTTCTGCggacaaaaacaaagcaatatGTTTGAACCAGATGGAAGAATATCCAATTATGATTCAACTCCAGAACATGTTCGCCTGGTAATACAGAAAATGATAGCAATGTACCATGAACTTCACTGTAAGCTGACTCattgtaaaataatgaaatgaataagaTCACATTAAATGTTGGACGCATTTGTAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004577904.1 lncRNA upstream 28090 8425810 ~ 8428641 (+) True LOC117596914
XR_004577895.1 lncRNA upstream 184826 8270410 ~ 8271905 (+) True LOC117596904
XR_004577894.1 lncRNA upstream 184826 8270410 ~ 8271905 (+) False LOC117596904
TU50295 lncRNA upstream 232906 8219916 ~ 8223825 (+) True G42548
TU50244 lncRNA upstream 259489 8196872 ~ 8197242 (+) True G42498
TU50449 lncRNA downstream 5190 8469629 ~ 8469881 (+) True trnak-cuu
TU50484 lncRNA downstream 87059 8551498 ~ 8551884 (+) True G42717
TU50485 lncRNA downstream 88272 8552711 ~ 8553382 (+) True G42718
TU50481 lncRNA downstream 147162 8611601 ~ 8650995 (+) True G42714
TU50545 lncRNA downstream 193786 8658225 ~ 8659561 (+) True G42763
XM_026934625.2 mRNA upstream 3780 8448657 ~ 8452951 (+) True dok1a
XM_026932353.2 mRNA upstream 10815 8441785 ~ 8445916 (+) True paip2b
XM_026945018.2 mRNA upstream 376441 8069821 ~ 8080290 (+) True lrpap1
XM_026941926.2 mRNA upstream 685393 7757610 ~ 7771338 (+) False cpz
XM_026935251.2 mRNA downstream 47538 8511977 ~ 8517230 (+) True tmem176
XM_026935228.2 mRNA downstream 66016 8530455 ~ 8534035 (+) True LOC113539481
XM_026935055.2 mRNA downstream 72400 8536839 ~ 8546738 (+) True LOC113539337
XM_026935045.2 mRNA downstream 72400 8536839 ~ 8546738 (+) False LOC113539337
XM_034301424.1 mRNA downstream 154286 8618725 ~ 8623407 (+) True si:dkey-9i23.8
XR_003404394.2 other upstream 790698 7649198 ~ 7666033 (+) False naa15b
TU49753 other upstream 1235708 7203950 ~ 7221023 (+) True G42075
XR_003404319.2 other upstream 3100034 5263582 ~ 5356697 (+) False znf827
TU48562 other upstream 3114981 5318534 ~ 5341750 (+) True G41047
TU47789 other upstream 4622120 3831949 ~ 3834611 (+) False LOC113545357
TU50445 other downstream 1308 8465747 ~ 8466312 (+) True G42685
trnak-cuu other downstream 5185 8469624 ~ 8469696 (+) False trnak-cuu
TU52056 other downstream 2087820 10552259 ~ 10558295 (+) True sprn
XR_004577889.1 other downstream 2130135 10594574 ~ 10608704 (+) False LOC113543929
XR_004577793.1 other downstream 2635154 11099593 ~ 11171114 (+) False dntt

Expression Profile