RNA id: XM_026935045.2


Basic Information

Item Value
RNA id XM_026935045.2
length 2112
RNA type mRNA
GC content 0.43
exon number 8
gene id LOC113539337
representative False

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 8536839 ~ 8546738 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CAAGCTATTAGAATATTGCATTGCATACAGCAGGCAATGGCAATACATTAGTTGCAACACCTAGATCAGAAAAACTCTCCACCAGCTTGGTTTATACATGGCATCAGGTGTTGTTGGCACAATTCAACcacatactgtgtgtatgtatgttctGTAATGGACAGGCATTCCATCTAGAGTGTATCTCTGCCTTGCATGCATGTTGACATTGGCAAGTTAAGTCCTGAAGTGACGTAATTAGCCGGTTTGATGAGTTTTCCAGGGACAGTAGACAGGTCTGTGCATGATAGTGTTCATTCCGTACCTGCATTATTCGCAATGCTTTATTGTTGAGAGCCAGCAATTTACGCATTAGAGTTGTCTCAGTAAGTAAAGTCACACATTTCCCGCTTCTACGCCAGAAAAACGAAATCCCAAGTTTAACACTGAACATGTGGGAGTTTTGGCTTCTGCTCTTAGCTGGTAATTTTATAGCcgAGTCCTGGAACCTTAATATCAATCATCTAGAGGTGACATATGGCCAGCAGCTAAGTATCACGATAACAAGTGCGACTCAGAAAATAGAGTTTACATCTATGAATAAACTGCGGTCGTATATTATCTGGTCCAGACGTATCCAGCCCAAAAAGGGACAAGTGATAGTATCAGGGGAAGAAAGACGCTTCATAATTAATTCTGTCACATTTGATGACCAGGGAAACTACACAGAGTGGAACTTCTGGGATAAAGTGGCTTCAGTCCATGTAGTGAAGGTTCTCTCTAAAAGGCGTATCCAGGGTTGTATGCCTGGTAAAAATCTTAGCATTTCCCTGGATGGCCTTTCAAAGGATGACGTTAAACTACAGTTCTCCAGCAAAGATTTCAACCTCACTCTGGTGGAGCGTGGCTTGCCTGTGGGCAACAATCATTCTGGATATTGGGGACGAATTCAAGTAACTACCAAAAATATCCAAGTTCTTATTGTTGATGGTTCTGATGTGGGGaagtatacactcactgaccgtGAAAATAATACAGTCATGATCGTCACTCTGAACATGGCTGGCTGTGAACTTAAGACCACTCAACTGAAACTGATGCACGGCGAGGAGTTTAGTATCAAGCTGCCGATTTGGTTTAAGAAGCTGGAGTTTAGCTCAGTGAATGAAGTACAATCTGTTATCTGGCCCAGCTGTGCTCAGAACACAAGGAAATATGTTAAAGGATCAGGTTTTCAAAGGCAATTTATAATTAGtcctgtaacatttaatgaTCAAGGAACCTACACACAGTGGAACTACAGGAACAAAGCGTCATCTATTTGTAAACTGGAGGTTGTCTATGCAGACCATGTCCAGGATTGTGTAGCTGGTAAGAATCTCAGCATTTCACTGGATGGCCTTTCAAAAGACGATGTCACGCTGCGTTTCACCAACCACGAATTCAACATCACTCTGGCGGAGCATGGTACCCCTGTGGGCAACTTACATAAACACTTCTCAGACAGGATCAAGGTGACTAGCAGCGAAATCCTGGTGCTCAACATTGAAACATCTCATATGGGCATCTACACACTCACTGATCGTGAAGATCGCAAGGTCAAGGTCATTACCCCGAACTTTGTCTctcaaCCAAATCCTCTGCTAGCTCTGTTGCTGTTGCTTTGTATACCACCCTGTGTTTGCTGCTGCTATGGGAATATGATCTATAAAAAATGCACCCAAAagaccaccaccaccatcaccaccaccaccaccaccactgtgAGCGCAGTGAAGTTTGAAAACCAAAGTCCACTTCTTGCATCTTCACCAGGCCACATGAGCACTGAAGCTCCTGCAGACAGCACACTGgtgcagtctccAGCCCCAAGCACTGACTGATGTCTGGACCTCTTTGGATTTCGCTGTCcaatttaacattaacatgggATAGAAGTCCAactccattttctttctgcagCCTTCTATGCTATCTTACATGGCCTTCAGGGGGAAAACAGGGATAGGTAGACCCAGTCACTCTGCAGTGTTGATCCAGAGGTTAGTTTTATGAGTGTAGTTTAATTTGCGGGTTTAGTCAATGAGATTGACTAAATTGCTCAACATTGccaggaggttttttttttttttg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU50449 lncRNA upstream 66958 8469629 ~ 8469881 (+) True trnak-cuu
XR_004577904.1 lncRNA upstream 108198 8425810 ~ 8428641 (+) True LOC117596914
XR_004577895.1 lncRNA upstream 264934 8270410 ~ 8271905 (+) True LOC117596904
XR_004577894.1 lncRNA upstream 264934 8270410 ~ 8271905 (+) False LOC117596904
TU50295 lncRNA upstream 313014 8219916 ~ 8223825 (+) True G42548
TU50484 lncRNA downstream 4760 8551498 ~ 8551884 (+) True G42717
TU50485 lncRNA downstream 5973 8552711 ~ 8553382 (+) True G42718
TU50481 lncRNA downstream 64863 8611601 ~ 8650995 (+) True G42714
TU50545 lncRNA downstream 111487 8658225 ~ 8659561 (+) True G42763
TU50572 lncRNA downstream 217873 8764611 ~ 8767603 (+) True G42782
XM_026935228.2 mRNA upstream 2804 8530455 ~ 8534035 (+) True LOC113539481
XM_026935251.2 mRNA upstream 19609 8511977 ~ 8517230 (+) True tmem176
XM_026934975.2 mRNA upstream 72400 8456731 ~ 8464439 (+) True si:ch211-89o9.6
XM_026934984.2 mRNA upstream 75299 8456728 ~ 8461540 (+) False si:ch211-89o9.6
XM_026934625.2 mRNA upstream 83888 8448657 ~ 8452951 (+) True dok1a
XM_034301424.1 mRNA downstream 71987 8618725 ~ 8623407 (+) True si:dkey-9i23.8
XM_026934966.2 mRNA downstream 80165 8626903 ~ 8634451 (+) True si:dkey-9i23.6
XM_026935289.2 mRNA downstream 124060 8670798 ~ 8673429 (+) True pold4
XM_026934770.2 mRNA downstream 128846 8675584 ~ 8712889 (+) True si:dkey-28b4.8
XM_026934999.2 mRNA downstream 177170 8723908 ~ 8739750 (+) True slc43a1b
trnak-cuu other upstream 67143 8469624 ~ 8469696 (+) False trnak-cuu
TU50445 other upstream 70527 8465747 ~ 8466312 (+) True G42685
XR_003404394.2 other upstream 870806 7649198 ~ 7666033 (+) False naa15b
TU49753 other upstream 1315816 7203950 ~ 7221023 (+) True G42075
TU48562 other upstream 3195089 5318534 ~ 5341750 (+) True G41047
TU52056 other downstream 2005521 10552259 ~ 10558295 (+) True sprn
XR_004577889.1 other downstream 2047836 10594574 ~ 10608704 (+) False LOC113543929
XR_004577793.1 other downstream 2552855 11099593 ~ 11171114 (+) False dntt
trnag-ccc other downstream 3044597 11591335 ~ 11591405 (+) True trnag-ccc
XR_003404598.2 other downstream 3136126 11682864 ~ 11726772 (+) False LOC113545306

Expression Profile