RNA id: XM_026935085.2


Basic Information

Item Value
RNA id XM_026935085.2
length 1988
RNA type mRNA
GC content 0.44
exon number 9
gene id LOC113539365
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 8553457 ~ 8562707 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTCACGTGATTGCCGGAATCCACGTGACGCCATTTTCCCGACTAGGTTAGAGTGCAGAGTTTGCGTGAGAAGAATGAGAGATGTTATTACAAACAGATGGTGTAGATTGAAGCAGACTGAGGTTACGTATAATGATTATATATCAAATACACATTACATGCagttactgtcatgtttttattttctaatttttcaacaacaacaacaataacaacaacaacaaaaagtaaaagaaagccGAATGCAGACATCAGTGTCTCCGAAAAGCAAGTGTCTGTGGAGCAGGAGGTCCTCCAGACCACACCCATTTCCTCTGGCCAATCGCCATCTTATCTGCCTGTGCTGTAAATGATGTTGGCTTTCTCTGTTCCTGGAATGATTTACTGTCTGCACATCGGGCTGTATTTCtgatgctttattattattattattattattattattattattattattaggtgaTTGCCTCTAGTGTTGCGCGGTTTAGGATAAAGTTGCTTCCCCCTGGTACTGCACATTGATCAAGGAAAGTAAGCTTTTTCCTGCATCTACTCCAGAAAAACAATCTCAGAAAGATGCAAGGTTTCTGGATCCTGCTCTTAGCAGTTCATATTATGTaCTCCTTTGCTGCTACTACTACGACTAAGACCTATCATGAGAAACTGATGTACGGACAACAGCTTAGTATCAGGCTGCCGACTGGGGCTGAGAATTTGGAGTATGTCTCTGCGGATGAATCACAGAAGAATGTCCTTTGGTCCAGATTTTCCATAACTAAAAGGGGAATAGTAATCGGAAGAGATGATAACAGAAAATTTGAAATTCTTTCTGTCACATTTGAAGATCAGGGAACCTACACTGTGTATAACTTCTGGAACAAAAAGATTTCCATCCATTTATTGAAGGTTATCACTAAAACAGGTATCCAGGACTGTGTGGCTGGTGAAACCTTAAGCATTTCACTGAGTGGTGTTTCGAAGAATAATGCCACACTACATTTTTCAAACGATGATTTCAACCTCACTCTGGTGGAGCGTGGCTCACCTGTGGGCAACTTACATCCTGAGTACATGGGACGGATCCAGGTGACTAGCAACAGCATTGAGGTGCTCAATGTCAATGTGTCAGATGTGGGCAACTACACACTCAGAGATCGTCTAAATCGCAAAGTCAAGATCATCTCTATGAGATTGGTTGatcATCATGAGGGAGTGAATGCAGGTCCTTTAATGGGTCTGCTGATGTTGCTTGGTATACCACCCTGTATCTACTGTTGCTGCAGAAAGAAGATCTGTAATAAGAGAAGccaacacaccaccaccaccaccaccaccactgtgATGTTAGACAACCAAATTAATCCACCTGGACCTCCAGTAGACTACGCCAACTCCACAGCTATTGCGGGCCCCACACCGGTCTATACTCCTGGTTACCCTGCTGTAGGTACTGTTCATCCTCCTCCTAATCCTACATTTCCTCCTCAACCACCCTACAGTGGATATCCTGCCACATCACCTGCTATGCCCCCTAACCCGCCCTTTAACCCCGGATACGCTCCTGCATCTGGGTTTCCTCCAGCTCAGCCTCCTCAATGGAGTGGTGCTCCCTACAACCAATCTGCTCCAGCTggtTTTGCTCCAGTAATGTACAATGCTCCTGCTGGGCCTGAGCCAGTCACAGGGGAAATAACTCCTATGACTCCACTACTCACACCTCCACAACCTGAGGTGGCACAGCCTCCAGCCCCATACGCTGGGGCTAATGTCATTAACTCCTCGGACTCTGCTGCCCAATTCAACATCAACATGGGAAAGGACTCAAGCTCCAACTTCCTGTAGATTCTCCAGCCTCCTTCAGCCTCCTTTACAACCTCACATGCCTGCTAATTTAACCAAAACAGAGAAACCTTATATAACcatgtatactgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatatatatatatatatatatatatatata

Function

GO:

id name namespace
GO:0006325 chromatin organization biological_process

KEGG:

id description
ko03050 Proteasome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU50741 lncRNA downstream 2102 8551130 ~ 8551355 (-) True G42914
TU50703 lncRNA downstream 60153 8493068 ~ 8493304 (-) True G42894
TU50701 lncRNA downstream 67447 8484155 ~ 8486010 (-) False LOC113539440
TU50426 lncRNA downstream 172742 8380340 ~ 8380715 (-) True G42671
TU50420 lncRNA downstream 254013 8299180 ~ 8299444 (-) True G42665
TU50814 lncRNA upstream 191444 8754151 ~ 8754896 (-) True G42970
TU50831 lncRNA upstream 205281 8767988 ~ 8769186 (-) True G42987
TU50844 lncRNA upstream 294551 8857258 ~ 8861508 (-) True G42994
TU50882 lncRNA upstream 453495 9016202 ~ 9017636 (-) True G43029
TU51072 lncRNA upstream 754721 9317428 ~ 9341922 (-) True G43198
XM_026935138.2 mRNA downstream 47731 8494136 ~ 8505726 (-) True vps37c
XM_026935185.2 mRNA downstream 60474 8483303 ~ 8492983 (-) True LOC113539440
XM_026934785.2 mRNA downstream 74438 8471530 ~ 8479019 (-) True tmem132a
XM_026933683.2 mRNA downstream 283340 8220599 ~ 8270117 (-) True htt
XM_026935066.2 mRNA upstream 3854 8566561 ~ 8573850 (-) True LOC113539349
XM_026934742.2 mRNA upstream 19483 8582190 ~ 8604478 (-) False kdm2aa
XM_026934750.2 mRNA upstream 19483 8582190 ~ 8603745 (-) True kdm2aa
XM_026934757.2 mRNA upstream 19483 8582190 ~ 8601757 (-) False kdm2aa
XM_026934724.2 mRNA upstream 19483 8582190 ~ 8601757 (-) False kdm2aa
trnae-cuc_7 other downstream 83028 8470358 ~ 8470429 (-) True trnae-cuc_7
trnam-cau_4 other downstream 83400 8469986 ~ 8470057 (-) True trnam-cau_4
trnam-cau_3 other downstream 84315 8469071 ~ 8469142 (-) True trnam-cau_3
trnam-cau_2 other downstream 85350 8468036 ~ 8468107 (-) True trnam-cau_2
trnam-cau_1 other downstream 86402 8466984 ~ 8467055 (-) True trnam-cau_1
XR_003403913.2 other upstream 193162 8755869 ~ 8783798 (-) False zdhhc5a
TU50809 other upstream 238536 8801243 ~ 8853794 (-) True G42967
TU50810 other upstream 286402 8849109 ~ 8853794 (-) False G42967
TU51003 other upstream 662174 9224881 ~ 9228884 (-) True sf3b5
trnag-gcc_1 other upstream 3145907 11708614 ~ 11708684 (-) True trnag-gcc_1

Expression Profile