RNA id: XM_026935173.2



Basic Information


Item Value
RNA id XM_026935173.2
length 1355
RNA type mRNA
GC content 0.42
exon number 11
gene id zgc:165520
representative True

Chromosome Information


Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 8605089 ~ 8610844 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence


ttatttctgattttgcaATGAAAATACACTGCCTAAAATTTAAGCATTAAATCTATTTGAAATTATTCAGAATATGTGGTTCCTCTTAATGATCAGTTTTCCAGTCTGACAGCagatttttctttccattttgctTGAAACTTacattaaattgtttaaattgaAAAGCCTTAGCACCAAGATGAAGGACCGACTGGCACAGCTGAAGGAGAAAACAGACCAAGCACCTGATGATGTGGAGATCCAGGtggaaaataaagaatttatgGATGAGTTCTTTGCTCAGATTGAAGAGATCCGCACCAGTATTGAGAAGATTGATGAGAATGTGACTGAGATAAAGCGCCTGTATTCTCTTATCCTCTCTGCACCTACCTCAGACCAAAAGACACAAGACGACCTGGAAGCCATCACCAATGAAATCAAGAAATTAGCCAACAACGTTCGCAACAAACTCAAAAGCATCGAGCAGAGTTTGGAGTCAAATGCAGAGGAGAGAGTTTCAGCCGATATGCGGATAAAGAAATCTCAGCACGCTGTCCTAGCAAGAAAGTTTGTGGAGGTTATGACCAGGTACAATGAAGCACAAGTAGAATTCAGAGACAAGAGCAAAGGGCGGATCCAGAGACAGCTAGAGATCACGGGTAAAACCACCACTgatgaggagctggaggagatgCTGGACGGTGGCAATGCTGCTGTCTTCAcagcagggATCGTGGACTCGGCCATCTCCAAGCAGGCCTTGAGTGAAATTGAAGCGAGACACAAAGACATCATGCGACTGGAGAGCAGCATTAAGGAGCTGCATGACATGTTTGTGGACATTGCCATGCTAGTGGAGAATCAGGGAAGCATAATTGACAGGATTGAAAGCAACATGGACCAGTCTGTGGGCTTCGTGGAACGAGCAGTGGCTGACACCAAAAAAGCAGCCAAGTTCCAACAGGAAGCCCGGAGGAAACAGATGATGATCACATTGTGTTGCATCATTCTTGCGGTCATCATTGGCTCCCTCGTGTACAGCTGGTTGAAGTGAAGAGGTCCAAGAGCCAACTCAGAGTGGAGTCTTAGACATCAATCAAGAGATGATGCTGCAGACTCACAGGCTTTCTTTGCCTTTCCTCTCTTTTATATTTCCATTGTTTGtccttgttttcatttttttttttgttatcctAAATGTTCAACTTACTTTACTTGCTCTTTGTAGGCCTACATAACAGTCTGCGATGTGTAATCCCTTTTTGTGAAGagtcaggtttgttttttttttgtgtaggtAGACCAGAAtaatagtatttattttactgaaagcacaaattctgagttttaACTGATGCACTGCCATTATC

Function


GO: NA

KEGG:

id description
K08486 STX1B_2_3; syntaxin 1B/2/3

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU50741 lncRNA downstream 53734 8551130 ~ 8551355 (-) True G42914
TU50703 lncRNA downstream 111785 8493068 ~ 8493304 (-) True G42894
TU50701 lncRNA downstream 119079 8484155 ~ 8486010 (-) False LOC113539440
TU50426 lncRNA downstream 224374 8380340 ~ 8380715 (-) True G42671
TU50420 lncRNA downstream 305645 8299180 ~ 8299444 (-) True G42665
TU50814 lncRNA upstream 143307 8754151 ~ 8754896 (-) True G42970
TU50831 lncRNA upstream 157144 8767988 ~ 8769186 (-) True G42987
TU50844 lncRNA upstream 246414 8857258 ~ 8861508 (-) True G42994
TU50882 lncRNA upstream 405358 9016202 ~ 9017636 (-) True G43029
TU51072 lncRNA upstream 706584 9317428 ~ 9341922 (-) True G43198
XM_026934742.2 mRNA downstream 611 8582190 ~ 8604478 (-) False kdm2aa
XM_026934750.2 mRNA downstream 1344 8582190 ~ 8603745 (-) True kdm2aa
XM_026934757.2 mRNA downstream 3332 8582190 ~ 8601757 (-) False kdm2aa
XM_026934724.2 mRNA downstream 3332 8582190 ~ 8601757 (-) False kdm2aa
XM_026934765.2 mRNA downstream 3399 8582190 ~ 8601690 (-) False kdm2aa
XM_026935239.2 mRNA upstream 1217 8612061 ~ 8616849 (-) True ndufs8a
XM_026935196.2 mRNA upstream 13722 8624566 ~ 8626389 (-) True tmem187
XM_026935129.2 mRNA upstream 27573 8638417 ~ 8646104 (-) True p2rx3b
XM_034303008.1 mRNA upstream 43318 8654162 ~ 8675424 (-) False ssrp1b
XM_034303006.1 mRNA upstream 43318 8654162 ~ 8675424 (-) True ssrp1b
trnae-cuc_7 other downstream 134660 8470358 ~ 8470429 (-) True trnae-cuc_7
trnam-cau_4 other downstream 135032 8469986 ~ 8470057 (-) True trnam-cau_4
trnam-cau_3 other downstream 135947 8469071 ~ 8469142 (-) True trnam-cau_3
trnam-cau_2 other downstream 136982 8468036 ~ 8468107 (-) True trnam-cau_2
trnam-cau_1 other downstream 138034 8466984 ~ 8467055 (-) True trnam-cau_1
XR_003403913.2 other upstream 145025 8755869 ~ 8783798 (-) False zdhhc5a
TU50809 other upstream 190399 8801243 ~ 8853794 (-) True G42967
TU50810 other upstream 238265 8849109 ~ 8853794 (-) False G42967
TU51003 other upstream 614037 9224881 ~ 9228884 (-) True sf3b5
trnag-gcc_1 other upstream 3097770 11708614 ~ 11708684 (-) True trnag-gcc_1

Expression Profile