RNA id: XM_026935196.2


Basic Information

Item Value
RNA id XM_026935196.2
length 1824
RNA type mRNA
GC content 0.43
exon number 1
gene id tmem187
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 8624566 ~ 8626389 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CGCACTACACTGAAGGCTATGCAGCTTCTTGTTGTTCCCCCAagctttttccccccactgtATCTTGAACTACAGCTTTAATTAGAAGTAGAGCTTTATTAACAATGTCAGCAGTCGTGCACGTTTTGCTGCCCTTCTTTCTCTGCATTGCTTTGGCGAACACTGACATTTTCAACAATGTGCTGGTGGACATGTCCTACGATCACTACGCTGAGAAGAGAGTGGATCAGCTTCCTGCCTTTCTGGCCATGCCGTTTAACTGCCTCGTAAACGTGGGTTACATTATAGTTGGTGTTTACTGGCTGAGCAGGAGGATGGATGATCCCCGAGCCGCTTACGCGAAGGACGTGTTCGCGCTTATGGCCCTCGCGTACGGACCGGTTCAGTGGACGCGCCTGGCCACGCTGCGCCGCGCTCCCTCCGTCCTGGACCAGTGGTTCACGCTGCCCATATTCGCGTGGGTGCCGGTGTGGTGTCGGGTCATTACGCACGGCTGGTCCGCTCGCAACGCGCTGGCTGTGGAGGTGTGCTCTGTGGCGAGCTACGCGCTGGCGCTGCTGCATGAGCGCGGCTTTGACTTGGCTCTCGCTGCTCACATCGCGGTGGCGGTGCTGCAGGCCGCCGCGGCTCAGCGCACCTCCGGAGACGCGGTGTCTCTGCGCTACTTCACACACGCAGCGCTCTCCTGCGCCGGATTTGTGCTTTTAAAACTCCTGGACCACGAGCTGGCCAAATTCTGGCTCTTTCAAACTCTCACTGGACATTTCTGGTCCAAAGTGTGCGACATTCTGCAGTTCCACTACGCTTTCTGCTTTCTTACGCACCTTACGCAAATTGCGCACAAACGGACGTCATAAATCAGTGACGCTGAAACCAGACCAGGACAAGCTGCCAAGTCAAgcggctttattgtcatttcaaccatatacagccagatAGTACACAGTTAAAccaaacaacgttcctccaggaccatggtgctacataacacaacacagaaGTACAAGAgaatacacattttttacacaaagtgcacatgcaacatgtgtaaacagcacaagacagtacaatgactaccaaaacaggacaacaggcacagtaagagacagtgcagcaccAACCAGTACACACTTCTAGTAAGAAAGTGAATCAaatatgacagtagtgcaaaagggTAGCaaatataagttgctgtaaatgtaaacataacatactatgacatagtattcagcagataagcttatactatatatatagacatagcagttattggggtagcagccaggtagagagtataaatagtgacaaaaaaattacatacaatattttataaataaatataccaaTGCCTTAATATCAATATGCCAGTGTCTTAATGGAcattacagtaacagtaataatgTACACTGCTTTTGTAATCCTTTTCATTCTATGCAGATCttatcatttttaaagcaaatttgtTTCAATGTATTGACAATTAACTATTAATTACTTACATTATTATATAGCATTAATATCATTCATTATATCTATTAAGAGCAGCTCAAACTGCTTTAAAGAAATtctagaaattaaataaactcaaagtcattttatgttcattttcaagtgataatatagaaataaaggAAGACACTCAGAATTTGAATAAGTTACATTagtaataaattgtaattttttaatcaatataaaaaaaCTAATGTAAAAAACGTTTTCTTCTGCCATTTAAAGTTGTAGCGAAGGACTGACAGATATAATGATTAACGCACATGAACAGAGTGCTGCTTCTCCAATTTTCTATGGGTTAACTCAATAAAAGTT

Function

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU50741 lncRNA downstream 73211 8551130 ~ 8551355 (-) True G42914
TU50703 lncRNA downstream 131262 8493068 ~ 8493304 (-) True G42894
TU50701 lncRNA downstream 138556 8484155 ~ 8486010 (-) False LOC113539440
TU50426 lncRNA downstream 243851 8380340 ~ 8380715 (-) True G42671
TU50420 lncRNA downstream 325122 8299180 ~ 8299444 (-) True G42665
TU50814 lncRNA upstream 127762 8754151 ~ 8754896 (-) True G42970
TU50831 lncRNA upstream 141599 8767988 ~ 8769186 (-) True G42987
TU50844 lncRNA upstream 230869 8857258 ~ 8861508 (-) True G42994
TU50882 lncRNA upstream 389813 9016202 ~ 9017636 (-) True G43029
TU51072 lncRNA upstream 691039 9317428 ~ 9341922 (-) True G43198
XM_026935239.2 mRNA downstream 7717 8612061 ~ 8616849 (-) True ndufs8a
XM_026935173.2 mRNA downstream 13722 8605089 ~ 8610844 (-) True zgc:165520
XM_026934750.2 mRNA downstream 20821 8582190 ~ 8603745 (-) True kdm2aa
XM_026935129.2 mRNA upstream 12028 8638417 ~ 8646104 (-) True p2rx3b
XM_034303008.1 mRNA upstream 27773 8654162 ~ 8675424 (-) False ssrp1b
XM_034303006.1 mRNA upstream 27773 8654162 ~ 8675424 (-) True ssrp1b
XM_034303005.1 mRNA upstream 27773 8654162 ~ 8670163 (-) False ssrp1b
XM_034303007.1 mRNA upstream 27773 8654162 ~ 8670141 (-) False ssrp1b
trnae-cuc_7 other downstream 154137 8470358 ~ 8470429 (-) True trnae-cuc_7
trnam-cau_4 other downstream 154509 8469986 ~ 8470057 (-) True trnam-cau_4
trnam-cau_3 other downstream 155424 8469071 ~ 8469142 (-) True trnam-cau_3
trnam-cau_2 other downstream 156459 8468036 ~ 8468107 (-) True trnam-cau_2
trnam-cau_1 other downstream 157511 8466984 ~ 8467055 (-) True trnam-cau_1
XR_003403913.2 other upstream 129480 8755869 ~ 8783798 (-) False zdhhc5a
TU50809 other upstream 174854 8801243 ~ 8853794 (-) True G42967
TU50810 other upstream 222720 8849109 ~ 8853794 (-) False G42967
TU51003 other upstream 598492 9224881 ~ 9228884 (-) True sf3b5
trnag-gcc_1 other upstream 3082225 11708614 ~ 11708684 (-) True trnag-gcc_1

Expression Profile