RNA id: XM_034302976.1


Basic Information

Item Value
RNA id XM_034302976.1
length 1252
RNA type mRNA
GC content 0.49
exon number 6
gene id crybb1l2
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 8823867 ~ 8830246 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATGTCCTGTGACTGTTGCACTAGTGACTAGTGCACTATTACCACAGCACGTCAGCCTGCAGTTCACTATAGGAATAATTGagttaTGTCTTCTGCTGAAGAGAAGCCCAAGCCTGCCGCTCAGCCTGATGGCAAGGCTGCGCAGAGCACCAAGTCAGACACTGGCATGAACGCGTACAAgATGTACGTGTTTGACCGTGAAAACTTCCAGGGCCGTATGATTGAAATCAGTAATGAGTGTAAGAACGTGTGTGAGATGGGCATGGACAAAGTGCGCTCTCTTCGTGTTGAATGTGGCCCTTTTGTTGGCTTTGAGCAGATGAACTTCTGTGGTGAGATGTATATCCTGGAGAAAGGCGAGTATCCTCGCTGGGACTGCTGGAGCAACTGCCAGAGGAACGACTATCTGCTCTCTTTCAGACCTGTCCGCATGGACCCAGAGAAGCACAAGATCTGTCTGTATGAGATTGGTGACTTTAAGGGGCGAAAGATGGAGATAATCAATGACGATGTGCCCAGTCTGTACTCCTACGGCTTCACTGACCGAGTTGGCAGCATCATGGTCAGCTGTGGAACCTGGGTGGGCTACCAATACCCGGGCTACCGTGGCAGTCAGTACCTGCTGGAGAAGGGTGACTACAAGCACTTTAATGAGTATGGTGCTCGCTTCCCCCAGATGCAGTCCGTGAGGCGTGTGCGTGACATGCAGTGGCACCCGGATGGCTCCTACACTGTGGCCAGCAAGTGAGGGTTTGAGAGGAtgggaaagagagggagaggtggggagagaaagagagggtgtGGAGCTGAGGGGAGAGGGGGAGGAGCAAGGGACAAGAAGGAGAGAAGGATCATGCCATCCATATAagggaaagaggaagagagtaATGGGTTATGAGTCTATGTAACAGTATAAATCATGGCTACTGACCATAGATAGTGATAGTGTGTTTGTTAAGCGTAGGATGGcacactctttttctctctcctatcTCATATCTCAtacttttcttctcctctcttttcctgttttctcaccctcatcctcctcttcctcatcctcaatTCAACTCTATTCTCTTGAGGAAAATCAAGCAAACCACTTCACGCTCTTTTCTCCAACTGGTGTTGGGATCAGGGGAGATGATTGACATGGATGGGTATGAGTAGGGTGACAAAGAGTGAGGTTTGGGCTTCAAGACCATATGAAAACCCCTCatctttatgaaataaaaaggaaatatgtGGCATCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU50831 lncRNA downstream 54681 8767988 ~ 8769186 (-) True G42987
TU50814 lncRNA downstream 68971 8754151 ~ 8754896 (-) True G42970
TU50741 lncRNA downstream 272512 8551130 ~ 8551355 (-) True G42914
TU50703 lncRNA downstream 330563 8493068 ~ 8493304 (-) True G42894
TU50701 lncRNA downstream 337857 8484155 ~ 8486010 (-) False LOC113539440
TU50844 lncRNA upstream 28084 8857258 ~ 8861508 (-) True G42994
TU50882 lncRNA upstream 187028 9016202 ~ 9017636 (-) True G43029
TU51072 lncRNA upstream 488254 9317428 ~ 9341922 (-) True G43198
TU51168 lncRNA upstream 553534 9382708 ~ 9412002 (-) True G43270
TU51261 lncRNA upstream 687537 9516711 ~ 9517005 (-) True G43352
XM_026935162.2 mRNA downstream 17614 8801231 ~ 8806253 (-) True rtn4rl2a
XM_026934919.2 mRNA downstream 40069 8754914 ~ 8783798 (-) True zdhhc5a
XM_026935207.2 mRNA downstream 80302 8739500 ~ 8743565 (-) True med19b
XM_026934935.2 mRNA downstream 153726 8654162 ~ 8670141 (-) False ssrp1b
XM_026934956.2 mRNA upstream 5217 8834391 ~ 8845914 (-) True unc93b1
XM_026935305.2 mRNA upstream 19928 8849102 ~ 8853815 (-) True timm10
XM_034303130.1 mRNA upstream 26446 8855620 ~ 8867270 (-) False LOC113539142
XM_034303129.1 mRNA upstream 26446 8855620 ~ 8867270 (-) False LOC113539142
XM_026934706.2 mRNA upstream 26446 8855620 ~ 8867270 (-) True LOC113539142
XR_003403913.2 other downstream 40069 8755869 ~ 8783798 (-) False zdhhc5a
trnae-cuc_7 other downstream 353438 8470358 ~ 8470429 (-) True trnae-cuc_7
trnam-cau_4 other downstream 353810 8469986 ~ 8470057 (-) True trnam-cau_4
trnam-cau_3 other downstream 354725 8469071 ~ 8469142 (-) True trnam-cau_3
trnam-cau_2 other downstream 355760 8468036 ~ 8468107 (-) True trnam-cau_2
TU50810 other upstream 19935 8849109 ~ 8853794 (-) False G42967
TU51003 other upstream 395707 9224881 ~ 9228884 (-) True sf3b5
trnag-gcc_1 other upstream 2879440 11708614 ~ 11708684 (-) True trnag-gcc_1
TU53378 other upstream 3315721 12144895 ~ 12152506 (-) False tmem254
TU53492 other upstream 3695462 12524636 ~ 12534075 (-) False LOC113537616

Expression Profile