RNA id: XM_026935239.2


Basic Information

Item Value
RNA id XM_026935239.2
length 1377
RNA type mRNA
GC content 0.46
exon number 7
gene id ndufs8a
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 8612061 ~ 8616849 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

cttgagTTCAGTCACGTGGTCAGTGGTACTTCCGGCGTCTCGAATGTGCGTTTCCTAAATCGTCCGCTGTTCTGGTTTAGAAGGCCAAATAGCGACAACCCGGCTTGATGGCTGCATCATTACGTCTGCTCTTTTCTGTGTCCAGGCCAGgcTCCTTTGTAGCGAGCCACAATCTTGTGCGTCCTCTCAGTTTATCAGCGCATAGAGAGGGTTACAAATATGTGAATGCTCAGGAACCTCTCAATGATATGAAGTCCATCACAGACCGAGCCGCTCAGACCCTGCTGTGGACAGAGCTGTTCCGAGGTTTGGGAATGACTATGAGCTATCTTTTCCGTGAGCCTGCCACCATTAACTACCCGTTTGAGAAAGGCCCACTGTCCCCTCGTTTTCGCGGAGAGCACGCGCTGCGCCGATACCCGTCTGGAGAGGAGCGCTGCATCGCCTGCAAGCTGTGTGAGGCTATCTGCCCAGcacagGCCATTACAATCGAAGCTGAACCTCGTGCTGATGGCAGCAGGCGAACAACACGTTACGACATCGACATGACAAAATGTATCTACTGTGGTTTCTGCCAGGAGGCCTGCCCCGTGGATGCCATTGTAGAGGGGCCAAACTTTGAATTTTCTACAGAGACTCACGAGGAGCTTCTTTATAACAAGGAAAAGCTGCTCAATAATGGAGACAAATGGGAGGCTGAGATCGCAGCCAATATTCAGGCTGACTATCTttacagatagacagactgtCTGGGTTCtggcacacacactgactgactgactgactgactgactgactgactgactgactgaatgccAACTGAGTTATCTTCATCAAAAGCGATCACTGATAAATTGTTCAGAGTTTATTCCTGATTAAGGTTGAGAGGCCCAAAGGATTTCAGCACAAACACCATGGTATAATGATTGACTCTCTAATAATTAAAGATGGTGATAATATAATGATGCTTTTAGGAAACTCTCTGCCCAGAAAGTCCTACTGGTTCTATCAATCCTGAAATCTGTTCAAAAACCATGGCACTTGCGTACTGTACTTCAGTACAAAACCtctgactaacacacacacacacacacacacacacacacacacactgtacagtttcctcacacacactctacatacatACTGTCCCAAAAGCACACCTCAGAGTGGTGTGACATGTGAGACAGCCTAAAAGCCATCAATTTTGCTTAAAAATAACTCTGCCTACCCTAAACACACAGCTCAGCAATAGTGGTATTGCAGAAAGAACATTTGTGTTGCTCTGATGTtatgacagaaagacagacaggattGTGTGTCCGTATAATAACTGTACAAAATACCTGtattgaataaattaatgttgAAAAAAGA

Function

GO: NA

KEGG:

id description
K03941 NDUFS8; NADH dehydrogenase (ubiquinone) Fe-S protein 8

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU50741 lncRNA downstream 60706 8551130 ~ 8551355 (-) True G42914
TU50703 lncRNA downstream 118757 8493068 ~ 8493304 (-) True G42894
TU50701 lncRNA downstream 126051 8484155 ~ 8486010 (-) False LOC113539440
TU50426 lncRNA downstream 231346 8380340 ~ 8380715 (-) True G42671
TU50420 lncRNA downstream 312617 8299180 ~ 8299444 (-) True G42665
TU50814 lncRNA upstream 137302 8754151 ~ 8754896 (-) True G42970
TU50831 lncRNA upstream 151139 8767988 ~ 8769186 (-) True G42987
TU50844 lncRNA upstream 240409 8857258 ~ 8861508 (-) True G42994
TU50882 lncRNA upstream 399353 9016202 ~ 9017636 (-) True G43029
TU51072 lncRNA upstream 700579 9317428 ~ 9341922 (-) True G43198
XM_026935173.2 mRNA downstream 1217 8605089 ~ 8610844 (-) True zgc:165520
XM_026934742.2 mRNA downstream 7583 8582190 ~ 8604478 (-) False kdm2aa
XM_026934750.2 mRNA downstream 8316 8582190 ~ 8603745 (-) True kdm2aa
XM_026934757.2 mRNA downstream 10304 8582190 ~ 8601757 (-) False kdm2aa
XM_026934724.2 mRNA downstream 10304 8582190 ~ 8601757 (-) False kdm2aa
XM_026935196.2 mRNA upstream 7717 8624566 ~ 8626389 (-) True tmem187
XM_026935129.2 mRNA upstream 21568 8638417 ~ 8646104 (-) True p2rx3b
XM_034303008.1 mRNA upstream 37313 8654162 ~ 8675424 (-) False ssrp1b
XM_034303006.1 mRNA upstream 37313 8654162 ~ 8675424 (-) True ssrp1b
XM_034303005.1 mRNA upstream 37313 8654162 ~ 8670163 (-) False ssrp1b
trnae-cuc_7 other downstream 141632 8470358 ~ 8470429 (-) True trnae-cuc_7
trnam-cau_4 other downstream 142004 8469986 ~ 8470057 (-) True trnam-cau_4
trnam-cau_3 other downstream 142919 8469071 ~ 8469142 (-) True trnam-cau_3
trnam-cau_2 other downstream 143954 8468036 ~ 8468107 (-) True trnam-cau_2
trnam-cau_1 other downstream 145006 8466984 ~ 8467055 (-) True trnam-cau_1
XR_003403913.2 other upstream 139020 8755869 ~ 8783798 (-) False zdhhc5a
TU50809 other upstream 184394 8801243 ~ 8853794 (-) True G42967
TU50810 other upstream 232260 8849109 ~ 8853794 (-) False G42967
TU51003 other upstream 608032 9224881 ~ 9228884 (-) True sf3b5
trnag-gcc_1 other upstream 3091765 11708614 ~ 11708684 (-) True trnag-gcc_1

Expression Profile