RNA id: XM_026935305.2


Basic Information

Item Value
RNA id XM_026935305.2
length 984
RNA type mRNA
GC content 0.46
exon number 2
gene id timm10
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 8849102 ~ 8853815 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCAGAATCTCACGCATGCGCAGTCCAACTTGGTCAGAGGACGCTGGTCAGGTAGCGACAAACCCCCACGTGCGCTTGTGCCGCTCTCCTTTAACTGAAGGTTAAACGTTGCTGTCAGTTTAGTGCATTTCGTCGGAGCTCGGTGGGGTTTTAAACGGGCTGAAAATCCAAGATGGACCCCATGAAAGCGCAGCAACTGGCGGCTGAGCTCGAGGTGGAAATGATGGCAGACATGTACAACCGAATGACCAACGCATGTCACAGGAAGTGTGTTCCTCCTCACTACAAGGAAGCAGAATTGTCAAAAGGCGAAGCAGTGTGTCTGGATCGCTGCGTGGCCAAGTACCTTGACTTGCACGAGAGGCTGGGCCGTAAACTCACTGAGCTGTCCGTACAGGACGAGGAGATGATGAGGAAAGCAGCCGCTGGCACTGGATAGACCTACAAGGACTCTCAAAGAGCAACAAAGTGCGGCCTGGGGTGGACTGGAGAGGGGACAGGAAACGCACATTACGCACATATTACAGACGTCCAAACGAAGTGGAGCTGGAGTATAGTAATGTGCGTGAGAAGACACCTCACCAGTCTTCAGTTaaatctctctatctctctctccagagTATGAAGTTGTGGTTGGAGTAATAAAGTAACCCAGATTTGATTTGCCCACAGGTTGCTTGTCAAAATGCAGAATCCTTGTTGGAATTGGTAATCAGTTACTGTGACATGATTGACTTACTCATCAGTTAGTGTTTTGTCTAAAAtcccaaatgtatgtggaccaGGTTGTGCATGATGGACATTACATTTGTGTGGGTTCTCCACTGGTTCTTTaccagtggtttttttttttttctcgtctttttatatttttgttaaaaacactTCATACTCACACTGTACAAACCATGTGCAAGTATGTTTTATTGTTCATGTTGGAAGACTAATATTTGCTGCATAGTATAATAAAATCTCTTATAATACA

Function

GO:

id name namespace
GO:0045039 protein insertion into mitochondrial inner membrane biological_process
GO:0005743 mitochondrial inner membrane cellular_component
GO:0046872 metal ion binding molecular_function

KEGG:

id description
K17778 TIM10; mitochondrial import inner membrane translocase subunit TIM10

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU50831 lncRNA downstream 79916 8767988 ~ 8769186 (-) True G42987
TU50814 lncRNA downstream 94206 8754151 ~ 8754896 (-) True G42970
TU50741 lncRNA downstream 297747 8551130 ~ 8551355 (-) True G42914
TU50703 lncRNA downstream 355798 8493068 ~ 8493304 (-) True G42894
TU50701 lncRNA downstream 363092 8484155 ~ 8486010 (-) False LOC113539440
TU50844 lncRNA upstream 3443 8857258 ~ 8861508 (-) True G42994
TU50882 lncRNA upstream 162387 9016202 ~ 9017636 (-) True G43029
TU51072 lncRNA upstream 463613 9317428 ~ 9341922 (-) True G43198
TU51168 lncRNA upstream 528893 9382708 ~ 9412002 (-) True G43270
TU51261 lncRNA upstream 662896 9516711 ~ 9517005 (-) True G43352
XM_026934956.2 mRNA downstream 3188 8834391 ~ 8845914 (-) True unc93b1
XM_026935216.2 mRNA downstream 18856 8823867 ~ 8830246 (-) False crybb1l2
XM_034302976.1 mRNA downstream 19928 8823867 ~ 8829174 (-) True crybb1l2
XM_026935162.2 mRNA downstream 42849 8801231 ~ 8806253 (-) True rtn4rl2a
XM_026934919.2 mRNA downstream 65304 8754914 ~ 8783798 (-) True zdhhc5a
XM_034303130.1 mRNA upstream 1805 8855620 ~ 8867270 (-) False LOC113539142
XM_034303129.1 mRNA upstream 1805 8855620 ~ 8867270 (-) False LOC113539142
XM_026934706.2 mRNA upstream 1805 8855620 ~ 8867270 (-) True LOC113539142
XM_034303128.1 mRNA upstream 1805 8855620 ~ 8866584 (-) False LOC113539142
XM_034303127.1 mRNA upstream 1805 8855620 ~ 8866584 (-) False LOC113539142
XR_003403913.2 other downstream 65304 8755869 ~ 8783798 (-) False zdhhc5a
trnae-cuc_7 other downstream 378673 8470358 ~ 8470429 (-) True trnae-cuc_7
trnam-cau_4 other downstream 379045 8469986 ~ 8470057 (-) True trnam-cau_4
trnam-cau_3 other downstream 379960 8469071 ~ 8469142 (-) True trnam-cau_3
trnam-cau_2 other downstream 380995 8468036 ~ 8468107 (-) True trnam-cau_2
TU51003 other upstream 371066 9224881 ~ 9228884 (-) True sf3b5
trnag-gcc_1 other upstream 2854799 11708614 ~ 11708684 (-) True trnag-gcc_1
TU53378 other upstream 3291080 12144895 ~ 12152506 (-) False tmem254
TU53492 other upstream 3670821 12524636 ~ 12534075 (-) False LOC113537616
TU53486 other upstream 3677628 12531443 ~ 12534075 (-) False LOC113537616

Expression Profile