RNA id: XM_026935385.2


Basic Information

Item Value
RNA id XM_026935385.2
length 4060
RNA type mRNA
GC content 0.45
exon number 16
gene id loxl3b
representative False

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 19261810 ~ 19281829 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CGCAAACGGAAACATGGAAAACCGCTCTTTAACGGTGAAAGAgccagtgtgtgttttctgaagACTCTTGCCCGCAGTCtcaactcctcctcctcctctccctctctctctctctctctctctctccccgccCCTCTCCCCCTCTTTCCATCTGGCACGTTTCTTCAGGTCGCGCTTAGGATCTGTAGTTATTAGGAGTCGCAGTGCTGTTAATAAACAGGATAAACGCTCTTTACAGCAGCTATGTCGAGTCTTCAGCGATCTGAGCCTTATTCATAACTTTTTGCCActgtgttaaaataattttttcttttaatttaaaaaaaaagtctccagGGCACCGAGCAAAACAGAAAAGGATCGATAAGCTTTTCAGAAGATCTAGCTATGGAGCAGTCTCAGTGGTGGAGACACATAGTCTTCCTCTTTCTTGGTGCTTGGGTTCCATCGTGCTTTGCTCAAACAGCGTCCACTGTGCGCCCAAGTCCCACCCCAACAGTCAAGTCACCTGAGCATCTGAAGTTTCGACTGGCTGGTCATCCGCGAAAGCACAATGAGGGCCGAATTGAGGTTTTCTATAAGGGCGAATGGGGAACCATCTGTGATGACGACTTCTCACTGGCCAATGCTCATGTGCTGTGTCGCCAGCTTGGGTTTGTCTCTGCTACAGGCTGGTCCCACAGCGCCAAGTACGGAAAGGGCACAggtaaGATCTGGTTAGATAACGTGCAGTGCAGTGGCAGTGAGAGGAGTATATCAGTGTGTAAGTCACGTGGATGGGGCAACAGTGACTGTACTCATGATGAAGATGCTGGGGTGATCTGTAAGGATGAGAGGTTGCCAGGATTTGTTGACTCCAACATCATAGAGGTGCAGGTGGATGAAAGGAATGTGGAGGAGGTGCGTCTCCGGCCAGTGGTATCCAGCAAGCGGCTGCCAGTGATAGAGGGAGTGGTGGAAGTGAGGTATAAAGACAACTGGGCCCAAATCTGTGATAACGGCTGGACACCTAAAAACTCAAAGGTTGTCTGTGGCATGATGGGTTTCCCCCATGAGAGGAAGGTCAACAAGAACTTCTACAAGCATCTCAGAAAGAGATCCACTGAGCCAAAAGTCAAAATTAGAGTAAAAGCAGACAGGCAAGAAGCCAAAGCTAAAGCTATCACTAAAGCTAGCTCTAAGTCTAAACCTGGCAACTCGGCCACAGCCAAAAGACTGTATGCAGAGCGGCAGAAGAATTACTTCTTGGTTCACTCTGTGGCATGTTTAGGCACGGAGATTCACCTAGCTGCCTGTCCTCTGGAGTTCACCCAGGCCAATGCCACTGAAAGCTGCCCAGGTGGCATGCCTGCTGTCGTCAGCTGTGTGCCTGGACCGGAGTATGCCCAAAACCGTGCCATGAAGAAAAAACTCAAATCCTCGAGCACAGTGCGTCTGAAAGGAGGAGCaaagccaggagagggccgtgTGGAGGTGCTGAAGGGCAATGAAtgggggacagtgtgtgatgatcgCTGGAACTTGCAGTCTGCCAGCGTCGTGTGCAGAGAACTGGGTTATGGCTCCGCTAAAGAGGCCCTTACTGGAGCTCGCATGGGACAAGGCATAGGTCCAATCTACATGAATGAGGTCCAGTGCACAGGTCATGAGCGTTCTCTATGGAACTGCCGCTATAAGAACATTACTGCTGAAGACTGCAAGCACACAGAGGATGCTGCAGTCCGATGTAACGTGCCATACATGGGCTTCGAGAAAACGGTACGGCTGGTGGGTGGGCGGTCGGAGTATGAGGGGAGAGTGGAGGTTTGGGTGGGTCAGCGCTGGggcagtgtgtgcagtgaggGCTGGACCACAAAAGAGGCCATGGTGGCTTGCAGACAGCTAGGGCTGGGTTTCAGCATGCATGCTATTactGAAACGTGGTACTGGGATGGCAGTAACGTGACTAACATGGTGATGAGCGGTGTGAAGTGTACGGGAGACGAACTGGCCCTCAGCCAGTGCCAGCAACACAAAACTCTCACCTGTCAGAAAACAGCCGCACGGTTCGCCGCAGGAGTTATCTGTTCAGAGACTGCGTCTGATCTGGTTCTGAATGCATCTCTGGTGCAGCAGACGGCATATATTGAGGACCGTCCACTGCACATGCTGTACTGTGCTGCAGAGGAAGACTGTCTGTCTAAAAGTGCTGCGAAAGTTAACTGGCCCTACGGCCACCGCCGCCTGCTTCGTTTCTCCTCGCAGATCCACAACATTGGCCGTGCTGATTTCAGGCCTAAAGCTGGACGCCACTCCTGGGTCTGGCATGCATGCCATGGGCATTATCACAGTATGGATATCTTCACACACTATGACTTGCTGAGTGTCAATGGCACCAAGGTGGCAGAGGGACACAAAGCTAGCTTCTGTCTAGAAGACAGTGACTGTCAGGAGGGTGTTTCCAAGCGTTATGAATGTGCTAATTTTGGAGAGCAGGGCATCACAGTAGGATGCTGGGATCTGTACCGGCATGACATCGACTGCCAGTGGATCGACATCACTGATGTCAAACCAGGAAATTACATCATGCAGGTAGTGATAAATCCTAATTTCGAGGTGTCTGAGAGTGACTACACAAATAATGCCATGAAATGCAACTGCAAATATGATGGCCACAGGATCTGGTTTCACAACTGTCATACCGGTGATGCTTTCAGCGAGGAGGCAGAGAGGAAGTTTGAGAAATACCCAGGACAGCTCAATAATGAGATCTCCTAATCCATACACCATACATTCATCTCATACATTATACCTTTTAATTTGGACTggatcatatacagtatattacccAGGTTACAGAGTAAGGATCTCTCTTACTTCTCATGTTCACACTCACGGAACAGGCAAGGTCTGTCAGAGGGAATGCTAAAGGAAATCCCAGCAATGACATTCATGGTGTTAGCACCATTGACCTTGCCATCCTGAGAGTCACAAGGGTTTGAATCCTGAGCTTGTTAAGTAGtgttttatcaaaaaaaaaaaaaaaaaaaaatcacagttatCATACATGTACCTCATTTTGCAGTATGGGCATTAGTCTTTAAGATATAATAATCATCAGAAAATAACCTTATCTAGTGATTCACAGAGTGTGTACCATGCATTTATTCACTCCACAGGCATAGTTTATGTTTATGGTGCTAAATGTTGACTGCCAAAAAGGTTTAAGGGCagcatttttaaagtattaCACAAAAAATGTGCAACTGTGACAGTTGTCTTCTActtgaaaaatgtattttcatcACATAGGATTAATTCAGCTGAAACAGCTTTATTTCATATGAACATAAGTTTCTTATTCACCAAAACATTACATAAAGGAACAGtatcttaaaaaatatttcctaTAATGCCATTCTTACCGAGGGTCTTACTGAGACAGACCTATCAAAgtaattaatgttttcttttttcctgaccaagttttattaatgtttttaggCCAATTTCTGGGTTTAAAAGCATTATGTACTTTTCTGCGGGTATTGTAAAATTATGttgcatattcatgtttttggtttttttttttaaacaaaaacttatttatacttttatctACAGGAActacacaagatttttttttgtttgtttgtttgtttgtttttttaacttttaattataCTTACCTAAGTAAATtgctttttaatttatgaaatcTTGCTGACTGGCTCCTGACATTTCACATTACCATCTTTTGTGTAGAGAACATTCCTATGAGTAGATTGTGCAAGATAAGGCATTCATTAACACCTGAAAtaggttatttttattttttcatccaAACAGAATTGTAGTCATGTATGTAGTCAAACTGTATGTCAATTTATAACATAACGTATGCCAAAGTGTGCTCTAGTGTGCACTCGTGGTCTTCTGAAAATTTATGAGAAACATTTCTCAAACACTGTTTTAAACGTAGCCATTCACTGCTACTTCAAcggaaaaaaatgttcaagtgTATGTTAAAGACTTCACATATACAGGGACAGACaaattcagcaataaaaatctGGGCCAT

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0048703 embryonic viscerocranium morphogenesis biological_process
GO:0016020 membrane cellular_component
GO:0005507 copper ion binding molecular_function
GO:0016641 oxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptor molecular_function
GO:0005044 scavenger receptor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU58155 lncRNA downstream 9947 19251593 ~ 19251863 (-) True G49184
TU58066 lncRNA downstream 71195 19190327 ~ 19190615 (-) True G49108
TU58001 lncRNA downstream 209059 19052527 ~ 19052751 (-) True G49053
TU57913 lncRNA downstream 292014 18969591 ~ 18969796 (-) True G48975
TU57908 lncRNA downstream 304351 18957157 ~ 18957459 (-) True G48970
TU58193 lncRNA upstream 118835 19400664 ~ 19400863 (-) True G49215
TU58214 lncRNA upstream 145917 19427746 ~ 19428725 (-) True G49232
TU58488 lncRNA upstream 406763 19688592 ~ 19688877 (-) True G49481
TU58495 lncRNA upstream 432336 19714165 ~ 19715420 (-) True G49484
TU58497 lncRNA upstream 432589 19714418 ~ 19715420 (-) False G49484
XM_034302920.1 mRNA downstream 26145 19222426 ~ 19235665 (-) True alms1
XM_026943318.2 mRNA downstream 42207 19217614 ~ 19219603 (-) True zgc:123321
XM_026940534.2 mRNA downstream 47649 19203112 ~ 19214161 (-) False wdr32
XM_026940524.2 mRNA downstream 47650 19203112 ~ 19214160 (-) True wdr32
XM_026940547.2 mRNA downstream 49781 19210279 ~ 19212029 (-) True pomk
XM_026945113.2 mRNA upstream 1267 19283096 ~ 19286041 (-) True pank2
XM_026943469.2 mRNA upstream 5279 19287108 ~ 19294701 (-) True mavs
XM_026937744.1 mRNA upstream 19376 19301205 ~ 19302542 (-) True LOC113540998
XM_026942251.2 mRNA upstream 75786 19357615 ~ 19362980 (-) True emx1
XM_026944643.2 mRNA upstream 92480 19374309 ~ 19375581 (-) False noto
TU57664 other downstream 648409 18330368 ~ 18613401 (-) True lrmda
TU56951 other downstream 1600426 17657581 ~ 17661384 (-) False col13a1
XR_004577786.1 other downstream 1687388 17562332 ~ 17574422 (-) False LOC113538666
XR_004577787.1 other downstream 1687388 17562332 ~ 17574422 (-) False LOC113538666
TU56907 other downstream 1785749 17471187 ~ 17476061 (-) True cisd1
TU58169 other upstream 34658 19316487 ~ 19319733 (-) True G49195
XR_004577815.1 other upstream 354009 19635838 ~ 19667661 (-) False atrn
TU58944 other upstream 1076105 20357934 ~ 20369097 (-) False gng2
TU58943 other upstream 1076159 20357988 ~ 20369097 (-) False gng2
TU58946 other upstream 1076159 20357988 ~ 20369429 (-) False gng2

Expression Profile