RNA id: XM_026935679.2


Basic Information

Item Value
RNA id XM_026935679.2
length 3340
RNA type mRNA
GC content 0.42
exon number 14
gene id sgpl1
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 13502714 ~ 13517097 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGCAGATGGTCGAGACACTACACTGATCTCTGGCTCATGTTCTAGCGTGAGCTTGCGCTCCTGAGGAAATCCTGTGGATTATAGATCTGTGCAAAGCGGATCCGCGAACCGGTGTGCACTTCCGGAGGTCGAGCCCGTGATTGTTGTGTAGCTCAATCGCCCGTCGCTCTTTCTACAACGCAAACAAAAGACCTCACCAGTTGACTTTTCGCTAATACTGCATAGGCGTCTCTTCTCTCTCGAGCTGCCCTTGAGGAGCAACATGGACTACACTAGTGCTTTGGAGGTGTATAAGGAGATGCTTCTGCTGTACTGTGAGGAGTTTAAGCACTACGTTAACTCAATGTGTGCTGGTTTGGAGCCATGGCAGATTATTGCATCAACATTGGTGTCTACCCTTGCTGCAATGTGGCTCAAaggcttcctgtttcagaaggagAGTCTGCTGTCTAGAACCAAGAAGCAGTGCTTTCGACTCATCAGAAAAATCCCATTTGTCGGCGCATCTATTCAGAACCAGCTGAACAAGGCACTTGATGACATGTCAATGAGCCTGTGCACGCTGAAGGAAGGAATGAGCTACACAAAGTGCCTGCCAGCACAGGGCCTCACACAGAAACAAGTCCTAGACAGCATCAGAGAGTACCAGACACTGAatGAAGTGAAGTGGTCCAAAGGCAAGGTTTCAGGGACAGTCTACTGGGGAGATGAAAAGCTCACAGATCTTCTGGTGAAGGTGTATGGTGAGTTTGCTTGGAGTAATCCCCTCCACCCAGACATCTTCCCTGGAGTGCGAAAGATGGAGGCAGAGGTGGTGCGGATGACATGTTCTCTCTTCAGTGGTGGGCCTGAGTCATGTGGCACAGTCACCTCTGGTGGAACTGAGAGCATTTTGATGGCCTGTAAGGCATACAGAGACCTGGCTTATGAGAGAGGAATCAAATATCCAGAGAtAATTGCACCAGTAAGCGCCCATGCAGCATTTGACAAGGCAGCACACTACTTTGGAATGAAACTGATTCATATACCTTTGGATAAGAAGACCATGAAAGTCGATGTGAAGGCCATGAAGAGAGCCATCTCTAAGAACACAGCCATGCTGGTGTGCTCTGCTCCTCagttccctcatgggatcataGACCCCATTGTGGAAGTAGGGAAGTTGGCAGAAAAGTACAACATTCCCTTCCATGTGGATGCCTGCCTGGGTGGGTTCCTTATAGTGTTCATGGAAAAGGCCGGGTTCAAGCTGGAGCCATTTGACTTCCGAGTTAAAAGCGTTACAAGCATTTCAGCAGACACACATAAGTATGGCTATGCACCCAAAGGCTCCTCAGTGGTGGTCTACAGAGACAAGAAATATCGCCACTACCAGTACTTTGTAGCCCCTGATTGGCAGGGAGGAATTTACGCATCTCCCTCAATAGCTGGTTCTCGGCCTGGTGGTATCATCGCTGCCTGTTGGGCCACCATGATGCATATGGGAGAGAGTGGCTACGTGGAGGCCACCAAGAAGGTTGTTCAAACAGCCCGCATCATTGCAGCGGGCATCCGTAAAGTGGAGGgactgtttgtgtttggaaaCCCAGAAGTCTCCGTGGTGGCCTTAGGCTCCAACGTATTCGATATCTTCCGTTTATCCAATGCACTCACATCAAAGGGCTGGAATCTCAACACTCTTCAGTTCCCGTCTAGCATCCATATTTGTGTAACTATGCTGCACACACAGCCTGGTGTTGCAGAGCAATTCATCAAAGATGTGAGGGAGGAAGTAgcaaaaatcatgaaaaatccAAAGGAGAAGACCACTGGAATGGGAGCAATCTATGGCATGGCCCAGTCCATCCCTGATCGGTCAATGGTGACTGAGGTATCACGCGGCTTCCTGGACTGCCTCTACAGCACCGATGTTAAAAAGGTCCAAAAAAACCACTACGCCAGCAAGAAGAACCACATGAATGGGAATTCTAAAACTCACTGAGTCTGGCGTGACTGCTGGGGTCTGTGCCTGCAGCTGCCCATGGGCTGCTCATCACATTTACatacagacttttttttgtccGTCATTTCAATCACTCATTTACTTATTTCTAGTTAACGCACAAGCCATATAACCCCATTCACTTTGGGCATTTCCTTCAAGGTGATGATTCACTGTAGATAAATCTGTCCATTAAGTCTGTGGTATCAATGTCAGTGCAGAAGGTTCAGGGACTGTTAGTTTTTTCAAAAAAAGCGTGTTTATATCATCAATTTCTGTTATATGGGTCTATTGACACTTCTCCTCATGTATTTCACATTCCTCTGGCCATACTGTTGGAGGTTAATACTCCAGCTGAGCTCTCAGGTTATCACTGATTGAATCACTCATTGAGATTTAAGTACAATTACCCAATTCAGTAAAAACTCCCAAACCTTTTAATTGCAAACTAAACAGAACTGTAATATTTTCAGAGTACAGTTGTCACAGATAGTAGCCTCATGCAAGCAGAGCAGTAAGTTTTAAGTTAAGAAGCTTTTAATTTGGAGTCCGTTCTTTGTGCTGGTGCTGATCCCAATCAGATAACTGTGCAACTTTATTAATGTTACCGAGTAACATGAAGATGGACGGAGcaatattttagtttttcttttaataaatatttccaacaaatattttccaatttatttccaataaatatttatcatgTAATGAAACTTGAAGTACTACTCAGGTGTACCTGAATAACAAAAAATCTTTTTGGTTTTTGATAATATTagaatttataataatttctaatttaataggttgtttaaaaaattgtacATTACAACTGAAAACAAAttagatgatttaaaaaaatcatgtcttaATTCTAAAATCTCCTGAATATGATTTACTGGTAGTTCTGAGATGGATCCTCCCCCACATTATGTCTACCTCAGAATTTGTTCCAACTGTTATACATTTAATCCTTAATGAACTTTTCTTCTTTATAATCACAATTATTGGAATAAATATTCACATCCCACATATTACTTTATTCAATCTACTGGCCACTTAATACAATGAGAAATTGTTTGAACTCCTTGGGAAATGGTTGGGATGGggatatattttttaagatatgtgtaataaacaattatattgtTAAAGTTTGTGAACTGTAAAAAGGGAAAGGAGCTTTTGGATCAGTAGTGAGATGACAATGACACGGTACCACTGAATCATGACTGCAGACCTCATTGGCTATTTAATTCTGTATGTATTCATAATGTTTGTGACCactatgtgtgtttttacattatGCATCACTAATATAGGGTCTCATATttcaataaatgtaataattatttttaa

Function

GO:

id name namespace
GO:0019752 carboxylic acid metabolic process biological_process
GO:0030170 pyridoxal phosphate binding molecular_function
GO:0016831 carboxy-lyase activity molecular_function

KEGG:

id description
K01634 SGPL1, DPL1; sphinganine-1-phosphate aldolase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU54100 lncRNA downstream 37975 13464496 ~ 13464739 (-) True G45755
TU54091 lncRNA downstream 71815 13430365 ~ 13430899 (-) False csgalnact2
TU53934 lncRNA downstream 189558 13312950 ~ 13313156 (-) True G45622
TU53928 lncRNA downstream 192474 13308094 ~ 13310240 (-) True G45616
TU53880 lncRNA downstream 252337 13248942 ~ 13250377 (-) True G45586
XR_003404420.2 lncRNA upstream 115658 13632755 ~ 13641524 (-) True LOC113543535
TU54560 lncRNA upstream 666671 14183768 ~ 14184086 (-) True G46183
TU54707 lncRNA upstream 772459 14289556 ~ 14291633 (-) True G46304
TU55041 lncRNA upstream 1096444 14613541 ~ 14613818 (-) True G46590
TU55042 lncRNA upstream 1097419 14614516 ~ 14614764 (-) True G46591
XM_034302722.1 mRNA downstream 4753 13465041 ~ 13497961 (-) False si:dkey-192p21.6
XM_034302720.1 mRNA downstream 4753 13465041 ~ 13497961 (-) False si:dkey-192p21.6
XM_034302721.1 mRNA downstream 4753 13465041 ~ 13497961 (-) True si:dkey-192p21.6
XM_034302719.1 mRNA downstream 7030 13465041 ~ 13495684 (-) False si:dkey-192p21.6
XM_026935690.2 mRNA downstream 7032 13465041 ~ 13495682 (-) False si:dkey-192p21.6
XM_026944855.2 mRNA upstream 14563 13531660 ~ 13536867 (-) True pdlim1
XM_034302760.1 mRNA upstream 28429 13545526 ~ 13554549 (-) True rel
XM_026937724.2 mRNA upstream 28429 13545526 ~ 13554532 (-) False rel
XM_034302759.1 mRNA upstream 39776 13556873 ~ 13571810 (-) False papolg
XM_034302758.1 mRNA upstream 39776 13556873 ~ 13571735 (-) False papolg
XR_004577863.1 other downstream 471518 13005486 ~ 13031196 (-) False slka
trnal-cag other downstream 768432 12734200 ~ 12734282 (-) True trnal-cag
trnae-cuc_9 other downstream 833823 12668820 ~ 12668891 (-) True trnae-cuc_9
trnak-cuu_2 other downstream 834149 12668493 ~ 12668565 (-) True trnak-cuu_2
trnak-cuu_1 other downstream 863112 12639530 ~ 12639602 (-) True trnak-cuu_1
XR_004577668.1 other upstream 664794 14181891 ~ 14192243 (-) True ccdc85a
TU55100 other upstream 1262768 14779865 ~ 14784734 (-) False sdhaf4
TU55523 other upstream 1896844 15413941 ~ 15416483 (-) False c3h10orf53
XR_004577773.1 other upstream 3462034 16979131 ~ 16982729 (-) False morn4
XR_004577771.1 other upstream 3462034 16979131 ~ 16982729 (-) False morn4

Expression Profile