RNA id: XM_034302724.1


Basic Information

Item Value
RNA id XM_034302724.1
length 1650
RNA type mRNA
GC content 0.45
exon number 14
gene id si:dkey-192p21.6
representative False

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 13465041 ~ 13497961 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AATAAATGAGTTCATTAGAGAAGCAGGTTTTCAGCTGACTATGGAGATCTGCAGCCTGAGACACATTTTCTATATTATTCTTCTCACAACAGGACAGTGTGAGATGATCATAAACACAGAAGCTACACTGAAAATGGATGAAGCGTTACTAACAGTCCGTAATCAGATGTCCTACGGGCTTCAAGTTCTCTACACCTCAGATTACTGCTATCAGTGTCTGTACCAACCTTTGGCTAGCATGGAAGTTGGACCAGGAAATGTGTCTGTGGTGCTGAGCACACCTTTCACTCTAACTCTGAAAGCCTCACCTGTGAATGCCACTAACACATTGTGCAGCATAAGCTATCTATTTGAAGAGGCAGGACATTATTCTCTTTGGGTCACACCTAGAGATGCACTTGATGTAACCTGCCATATTTCTCTGGATAAGTTTCCACATAGCACTTACCAACGCCTTACCATAGCTGATCTTGTGATGCCCTGCTCCATGCGAAGGAAAGGTGTGACAAGACTCCAACTTTTGCGCAAGCTGAGCTGGAGAACAGTGGTGCTGATGCTTATTGGGTTCTGCTTCATTAACTACAGCCCCAGAGATGGTTTATTGTCATGGTCCTGGCTGCGGATACCTGGAGTGCTTCAGCGTCTGGCTTTCACCTACTTTATCCTGTCACTGATGCAGATGTTCTCTCCCTACCGAGAGATCCCACCAAGTCAGGTTCGCTGGTGGAGCCCTGTTCAGGATGTGGTGCTCTATTGGCCCGAGTGGATTTTCATTTTGCTGCTGGAGACGGTGTGGCTATGTGTCACCTTCCTGCTGCCTGTGCCCCACTGCCCCACTGGGTATTTAGGAGCTGGAGGTATAGGAGATAATGCTCTTTACCCAAACTGCACAGGAGGGGCTGCTGCATATATAGATAGATGGTTATTAGGACACAATATCTACTGGCATCCAACATGCAAGGCCATGTATCATACAACTCAGCCTTTTGACCCAGAAGGAGTCCTAGGTACTATTAATTCTATTGTCATGGGATTCATTGGCATGCAAGCAGGAAAGATTTTCCTCTTCTACCGCAAATTGAACAACAAGATCATCATACGGTTCTCGGTCTGGGCTGTCATCCTGGGAATCTTGGCGGCCATCCTTTCTAAGTGCACACGAGACTCTGGATTTATACCTGTCAATAAAAACCTTTGGTCTCTGTCCTATGTGGCCTGCATGGGCTCCATGTCCTTTGTGCTGCTGGGTGTGATGTATTTTGTTGTGGACATCAAGGGATGGTGGGGTGGCCAACCTTTCATTTACCCCGGAATGAACTCCATCTTGGTATACGTGGGCCATTCTCTGCTGGGTTTTTACTTTCCTTTCAGCTGGGAGATGCGCTACCAGGACAGTCACTGGGAGCCACTATTCCAGAGCCTGTGGGGAACTGCACTCTGGATCTTTATCACCTATCTGCTCTACCACAAACGATTTTTCCTCAAAATCTAAATTTGTCTTTGTGAGCATTTAAATTGGGTAGATGATGCAACATTGtctttttattcaaattaatgCTTCTCTATTAGCCCTGATGTATTAGTTTAGTCCACAAAACTGAATGTAGAATATTCCAGTACTCAATTAGTAAAAAGGTATCTGTACTGAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU54100 lncRNA downstream 302 13464496 ~ 13464739 (-) True G45755
TU54091 lncRNA downstream 34142 13430365 ~ 13430899 (-) False csgalnact2
TU53934 lncRNA downstream 151885 13312950 ~ 13313156 (-) True G45622
TU53928 lncRNA downstream 154801 13308094 ~ 13310240 (-) True G45616
TU53880 lncRNA downstream 214664 13248942 ~ 13250377 (-) True G45586
XR_003404420.2 lncRNA upstream 137075 13632755 ~ 13641524 (-) True LOC113543535
TU54560 lncRNA upstream 688088 14183768 ~ 14184086 (-) True G46183
TU54707 lncRNA upstream 793876 14289556 ~ 14291633 (-) True G46304
TU55041 lncRNA upstream 1117861 14613541 ~ 14613818 (-) True G46590
TU55042 lncRNA upstream 1118836 14614516 ~ 14614764 (-) True G46591
XM_026932451.2 mRNA downstream 5464 13437136 ~ 13459577 (-) False ret
XM_026932460.2 mRNA downstream 5464 13437850 ~ 13459577 (-) True ret
XM_026939115.2 mRNA downstream 29555 13429997 ~ 13435486 (-) False csgalnact2
XM_034302797.1 mRNA downstream 29797 13429997 ~ 13435244 (-) True csgalnact2
XM_026932634.2 mRNA downstream 47370 13405268 ~ 13417671 (-) True mcmbp
XM_026935679.2 mRNA upstream 7034 13502714 ~ 13517097 (-) True sgpl1
XM_026944855.2 mRNA upstream 35980 13531660 ~ 13536867 (-) True pdlim1
XM_034302760.1 mRNA upstream 49846 13545526 ~ 13554549 (-) True rel
XM_026937724.2 mRNA upstream 49846 13545526 ~ 13554532 (-) False rel
XM_034302759.1 mRNA upstream 61193 13556873 ~ 13571810 (-) False papolg
XR_004577863.1 other downstream 433845 13005486 ~ 13031196 (-) False slka
trnal-cag other downstream 730759 12734200 ~ 12734282 (-) True trnal-cag
trnae-cuc_9 other downstream 796150 12668820 ~ 12668891 (-) True trnae-cuc_9
trnak-cuu_2 other downstream 796476 12668493 ~ 12668565 (-) True trnak-cuu_2
trnak-cuu_1 other downstream 825439 12639530 ~ 12639602 (-) True trnak-cuu_1
XR_004577668.1 other upstream 686211 14181891 ~ 14192243 (-) True ccdc85a
TU55100 other upstream 1284185 14779865 ~ 14784734 (-) False sdhaf4
TU55523 other upstream 1918261 15413941 ~ 15416483 (-) False c3h10orf53
XR_004577773.1 other upstream 3483451 16979131 ~ 16982729 (-) False morn4
XR_004577771.1 other upstream 3483451 16979131 ~ 16982729 (-) False morn4

Expression Profile