RNA id: XM_026935712.2


Basic Information

Item Value
RNA id XM_026935712.2
length 8621
RNA type mRNA
GC content 0.47
exon number 25
gene id si:ch73-105b23.6
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 21577863 ~ 21602259 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ACAGAAAGAGTGTCTTCGTGGAGggggacacagacacacagagcagtCTAAGAGGATTAGATCAATCTCTGCCCCAATGCCAGCCTCTTAAAACTTCAGTCCATCTGTAAGATATGCAGACTCCACAGCTCTGCCTGTTGTATCTGTGTACTATTCTCATGTACACCGGTGTAGCTCCAAATCTCAGTGACTGTGAAGGAATAGGAAAGATATGCCATGCCCACGCAGACTGCGTCAAAACACGCAACAGCATCACTTGTGTTTGCCTCCCTGGATACAATGGCGATGGACTACAGTGTGACGACATAGACGAATGCACTGTTGGCATTCACGGCTGCAACTTACAAGCGCACTGTGAGAACACACCAGGCAGCTACAGATGTGTGTGCCTAGATGGATATTCTGGAGATGGCTTTCAGTGTGTGGATATTAATGAGTGTCAAACAGGAAATGGTGGCTGCCACACTGATGCAATTTGCACCAATACAAATGGGGGGCGAACATGCCAGTGTAAGAGCGGCTTCATTGGAAATGGGCTTCAATGCAATGATGATAACGAATGCTCCAGGCCAAACATCTGCCACTGGAATGCCGTCTGTACCAACATCCCTGGTTCATACATATGCACATGCAATTCTGGATATAAAGGCAATGGTAACTATCTTTGCCTGGACACTGATGAGTGTTCAGAAAttccaggtgtgtgtgctgccCAATTTGGTTTCAAGGGCTGCAAGAATCTACCGGGAACCTACCAATGCCTTTGCAGCAATGGCTACCAGAGCAATGGGAAAACCTGTGAGGACATTAATGAATGTGCAGACAATATCTGTAGTAGGTTCTCTAACTGTGTGAACACTCCTGGTTCTTTTCAGTGCTCTTGTCGGGAAGGTTTTGCCGGGAATGGCATTACATGCGTGGATATCAATGAATGTAGTGGGAAGAATCTCTGTGACCCAAACGCACTGTGTATCAACGTGCTTGGCAGCTATGAATGCTCATGTCGCTCTGGTTTCCTTGGAGAAGGGTTCCAGTGTACCGACATTAATGAGTGTAAAGTAAATAATGTATGCCCAGTTGGTGCAACCTGCATCAACACTGCAGGCTCCTTCTACTGTGACTGTGGTCAAGGCTATATTttcaataaaacacagtgtCAGGATCTGGATGAATGTGCAGTAGGCCGCTGTAGCCCCTATGCTTCATGCACAAATTTTCCTGGCTCGTTCACATGTGCATGTCACCCTGGTTTTGTTGGTGATGGTTTATTCTGTGAGGATGTGAACGAGTGTGCCATGTCCCAGAAATGCCCCTCTCATGCCCTCTGCACCAACTTGCCTGGGAGTTACAACTGCAGCTGCATGGTGGGATACACAGGTGATGGCCTGACGCTGTGTTCAGACATAGATGAGTGCCAGGTGAACAATGGTGGATGCAGTGCCAAGGCCACATGTGCTAACAGCATGGGGTCCTtctcctgtctctgtccctcAGGGTTTATCCTTGTCAATAACACCATATGCCAGGATATAGACGAATGCCAGGTACTGGAAAAGCCTTGTAAGGCCTACGAGAAATGCTCCAATAAAGAGGGTTTTTATGAGTGCTCCTGCCAGACAGGGTTTACTCGTCCCAGTAAGAACACAGGATGTTCTGATATTGATGAGTGTCTAATATATCAGTCATGCCATCCCAATGCAACCTGTGTCAACTCCGTTGGTTCTTTCATGTGCACCTGTAAAAATGGCTTCAGTGGAAATGGTACTTATTGCGAGGACGTGAATGAATGTGCAGCAAAGGGTACGTGTCACCCACACGCTCTGTGCCACAACATCCCAGGTGACTTCTCCTGCCAATGCCAAAAGGGCTTTGAAGGAAATGGCTTCACCTGCATGGACCTGGATGAATGTGTGTTATCAAACACTACCTGCCCTGCTAACTCAGTGTGCATTAATTCTCCTGGAACGTATGTGTGCTCTTGTATGAATGGTACAGTGGTATATAATAACACATGTGCTCCACCTAGCACATGGTGTAACCCTCCTTGCCATCCATTTGGGCTCTGCCACCCTTCACCTTTGGgatatcagtgtgtatgtgaCGTCGGGTTCAAAGGGAATGGATACATCTGTTCAGACATTGATGAATGTCAGCAGAATGTGTGTCTCAGGAATGAGACTGAGTGTGTAAACAATCCAGGCTCATTCTCCTGCATCTGCAAAATGGGTTATTCTCAAAATGGAACAGAATGCTTGGATGTGGACGAGTGTACTTCTGGAAAGGATGAGTGCAGTGAGTTTGCACAGTGTGTCAACACGGTTGGGAGTCACCTGTGCTTCTGTCTCAGTGGCTTCACTGGAAATGGAAAAAGCTGCTCTGACATTGATGAGTGCCAGTCTCAGAATGGAGGGTGCCATCCCACTGCCAGCTGCACTAATACTCCTGGTTCCTACAAGTGCACTTGCCCACCGGGTATGCCCGGGTCAGGGTTTGATTGCGTGGATGTGGATGAATGTTTGGAGAATTCAACTTTGCACCACAACTGCAGTCATCTTGCTTTGTGCAACAACACAGCGGGCTCCTATGTTTGCCACTGCCTGGGGGGATACCAGGGTGATGGCTTTACCTGTGCTGATGTGGATGAGTGTCTGCTACCTTCATACTGTAGCAGCAACATGATTTGCCAAAACACACCTGGGGCATACACCTGTACTTGCATTCTGGGTATGGTCTATGATTCTGGTACCTGTGTGAGTGAAAAAGAATGTGTGAACAGTACCCAAGGCTGCAGTACCCATGCTGAATGCAATGCCATTCTGGGGTCGTACTACTGCGCCTGCAGAGAGGGCTTtaatggaaatggaatggaGTGCAGGGACGTGGATGAATGCGGCTGGACAGGAAACCAAACATGCCCACAATTTTCCTACTGCTTCAACACAGAAGGCTCGTACTACTGTGACTGCTGGAAAGGATATCAGAACAATGGGACACATTGCGAGGATATAAATGAGTGTCAGATGGGTAATTTTACCTGTCCTGACAACAGCATCTGCATCAATAAGGAAGGGGGATACTACTGTCCATGCAGTGTTGGCTTTGTTGCAAAAAACTCCCTGTGTTTGGACATTGATGAGTGTGCCACAAGTCCAACACTGTGTCCTAATTCATCTGATTGCAAAAACACAGTTGGATCGTATTTCTGTGAGTGTTGGGATGGATACTCGGGTAATGGAACACACTGTAGAGACATGAATGAATGCCTGGATAACTCTACATGCCCAGAACACAGTGTTTGTGTCAATATAGCAGGTGGATTTCTCTGCCAATGTGAGGTTGGGTTCTCCAGTAACAGCCCAAACGTTACCCACTGTAATGATATTGATGAATGTTCAGAGACCGGCCCACTGTGTACTAACGGGACCTGCATCAACACTGCTGGTTCATTCTACTGTGTGTGCAATAAAGGATTTTGGAGCAATGTGACTGAGTGCCATGATATAGATGAGTGCTTGGCATCCCAGAATGGTTCAATATGCCAGGCTCACTCCACTTGTGTGAATGTTCCAGGCTCATATGAATGTAAGTGCCATATGGGCTTTCTGCTGAATGGTACAATGTGTCAAGACATTGATGAATGCAAGAAAAATACAAGTTTTTGCACTGAAAATTCACAGTGTGTGAACACTGAAGGCTCCTTTATTTGCCCATGCTTGTCTGGCTACAAAGCTCAGGGGCCAAACTGCACTGACATTGATGAGTGTATGCTCACTAACTCCTGCCGTCCAGACCAGATTTGCACCAATTTGCATGGTTCATACCAATGCTCTTGTGCCATGGGGTACCAGGAGGAAAATGGAACCTGCACAGACACAGATGAATGTCAGAATGCCTCAGCAGTTTGTCATACTCTGGCTCGGTGCTGGAACAGTGTAGGGTCTTTCTCCTGCCACTGCCCCTTGGGTTATTCTGGGGATGGGACACAATGCAAAGACATCGATGAATGTTCTTTAATCACCTCTCCTTGCCACACACAAGGCAAATGCATCAATACACCAGGATcgtacagatgtgtgtgttctccaggTCTGTTGGCCCTTGGGCCAGTGTGTGTGGACTTAAATGAGTGTCGGCAGAATCGAGGCGGGTGCCATCCTGCTGCCATATGCCAAAACTCTATAGCTGGTTTTGAGTGCCAGTGTGCTAACGGCTGGGATACGACAGCTCAGAAAGGGAGCGGATCATATGGATGCACTGACAGAAATGAGTGTCTGTCAGCCACTGCTTGCTATGGCAACACAACCTGCACAAATTTGATCGGATCCTTCACTTGCACCTGCCCTGGTGATAATTCCAACTGTCAACAGTCAACACAAATTGAGAATGTACTGTACCCTTTTGGACTGGGGATTGGTGATGAGAGGTTACCAATGTCAACAGCAGATGGAAACTCTCCATACATTATTCCTCCTGTAGGGTTTTTATTCATGGGCAAGCTCTATGAAAGATTATTTTTTTCAGACAATGGACTGGTTCAGTTCCAGACAGTTGACACGAACCAGAAGCTCCTCCTTCCTATTCCATTCTCCAAAGGATTTAGTGGTAATGAAAGCATGGCCATGTTAGCTGTGTTCTGGGATGATGCTGACCTCACATTAGGAGATGGAAAACTGTTCTACAAGGAATATCATCAGTTTAACATATCAGATGTTTACTCTCAAATAGTCTTCAACCGCACACGTGATGATGTGACTCAGTTTGAGGTAAAAAGGGGGAAACCTGCATTCACTCCCACATGGATTCTGAAAATCACATGGGACCATGTCCTGCCCATCTCCtaccagaaaatcaacttatcTGAGACGAACACATTCCAAGCTATCCTGACCACAGATGGTATTCGCTCGTTTGCCTTACTCCGCTACGGCGACATGAGCTGGGGTCCAGGACAGAGGATTTACCACAACGCTCTGATAGGCTACACTGATGGCACCAGCACCTACCGCAATGAGATTCCAAACCCACCCAGCAATCTTTTTGGTCCAGGTGGTCGTTATCGACCCCAGAGCATTGTGGGCAACACAGGCCAGTTGGGGCAGCTTCTGTATGACCTGACCGGAGCCACAGTGGTCAGCTCAGATCCTCAGAGTCAGTGCCAGGTATGGGCTCTGAAGGAACCAGAGCCCAAAGAGTGGACACTAGGGCTGACACCATGCCCTTGTACTCGCACCCAGGCACTGGACGACCTGGTGTTTGGTCCCGAGATCCTGCCAGTGGAGAATGGCACATATGTGCAGAAGCTGCGGGGTCTCCGCTGGGGTGGAACTGTAGGTCAAGTGTTTCAGTCAATACTCTTCAACAAGCAAAATGCAGGAAAGAGATGTGTGTATGATCCCCAAGGCCCTCTGCTGGCTGGATACAGTGAACGCTATTTTACCAATGACAACATACAAGAGCACATTGATAAGGATCTCATGCCCTTCCAGTGGTGCTGTGTCCAGTCTTCTTTCTGCCATCTTTACCTGGCTAAGAGACCACTAGACCGGTGTCAGGGTTATGGCTGGACACGTTTAGACCCAAGCATTCCAGAAAGCACAGGAGCACCTGGCCTTGGTTTGGCATATGGAAGCCTCCACTTTGTTACATTCGATGGAACTAACTACACTTTCAAAGCCATAGGAGTGTTTGTAATTGTGCGTCTGTCCTCCAGTAAAGGCTCCAATGTCTTCACTCtgcagggagagacagaggtgCTAGAGACTAACGGGCAGCCCAGTCAAGTGCCGGCTCTAGCGCGCTTAGCTGCCTACCACCAGGCCTACGGCAAGGTGGAATGGCGAAGCTCTATGTCTGGAGAGAAGCTAATTGTACTAATCAATGATGTGGAGTTTCCTGTTTTTGCAGGTGTAGTACATTCTGTACAACAAGGCTTTGCATTGCGCTGTCCCACAGTGCAGCGCTGTGCAACTGTCTATGAAGGAGGGCTGAATGTGGATGTGTGGATGGGGGACGCCAGGAGACTCTCTACTCTGGTGGAGGTCCCACAGAGCTTTTACAATCGCACCGTAGGCCTGCTGGGCCTCTGGAGCGCCAACACTTCCGATGACTTCCTCCTCTCCAATGGACTCTTGCTATCTTTGCCTGACAACAACCCCCCCACTGAGAACAGACTCCTGCTCTTCGGACAGTCATGGGCTGTCCCTCTTCCAGAGAGTCTCCTATTCACCACTCCTCCCCTGACACTCTTTCAGCCTGTGGGCACAGAGGAATTGATGACATCAGTTAGCCCGGACACACTGGCCAGACTTCAGGAGGCGTGCCAGGGCAGCATGCAATGTGTGCATGACATCCTAGCCACAAAGAACACCAATCTGGGCCTACAGAGCCTGCAGGATCAAAAGAAAATCTACAAGCTCGCTGTTACCTTTGGTAACATACCACCCATTTTGAGTGAGCCCACAGTGATCCGCTGTAAGGTGAACACTACATTAAGAGTGCAGTTTGTAGCACAGGATGCGAACAGAGACCCTGTCAGCTTCTCCCTGCTCCATCCACGACCGCCTCTAGCCACCATAGGAAGAGATGATGGAGTTCTGGTGTGGACTCCGTTAAATATTCAGCCCGTGCTGCTCACTGTGCAGGTGAGTGACCATATGTCCAGCTCTCTGCTTATCCCCATTCTGCAGCTCTGCAGCTGTCTGAACGGAGGAACCTGCCAGTACCAGAGTGTGGCAGAGAACCACTTGCAGGGAAAATTCCAGGTTGCAGGGTGTCTGTGCCCACCAGGTTTTGGTGGAAGATACTGTGGAAATAGAACTGATGTGTGTAAAGGCAAGCCTTGCTTCCCTGGAGTGGACTGCATCATTCAGCAAGAGGGGGACAGTTTTAGCTGTGGAGAATGTCCTCCCCCTACTGTCTCTAATGACAGACAAGGTTACAAATGCTTTGAGAATGATTTCTGCCTTCCTCCTTTTCGCTTTCCCTGTCATGAGATGGCAGTCTGCTACAGCACTGGCTATAACTACACATGCCGCTGTAAGCCAGGCTTTTCTGGCAATGGACGTGAATGCACAGATATAGATGAGTGCCAGAACCCTGAAACCTGCCCTAATGCAAAGTTTGAGTGCGTGAACACACCTGGCTCAGTGTACTGCCCCTGCCGCTATCAGAGCTCCCCGGATTCCAATGGCTGTGGTGATTCTCCAAATCCTACAGGgtggaatatttttaatgtcTCCGTCACCTGGAGCAGTCCAAAGACTGGACAACAGCAACTGAAACAGCTGGAGCAAATCCTTTCTATGGGTTTCCAGAATAAATTCTACAGTGCCAATTCAATATTGCTGCCTAACTCAGGATCAGAGGAAGGGAATGAGCACAGAATCAATGTGTCCAGTGATACTCCGCATTGGTACATCTTGGACTACCTGAGCCGAGTCGGTCACTACTACGGCATCACATCAGCCTATGTAGGAGACCTAGATGAGTGCTACAGCAATGAGACTGTGTGTACACACCCAGCTGTGTGTTACAACACTTATGGAGGCTACAGATGCGTGTGTAATGGCACTGACATGAAGGAGTCGCAGTCTTGCATTTTAGATGGGAATGGTCTTAATAAACCAAGTCTGATAGATGCTACAACTAGGGAAGATAATAAACCCCTGATTCTTGGTTTGGTCCTGGGCATCGGTATCcccctcctcctgctgctgctgctggccgCTCTGGCCTGCTTCTGCTGCTGTCACAGGAGAACCGTCACTGGAGAAATTCCTCACTTGCTGCCAGAATATGTACAAGAGCATTTCAGCTCACATTTCAACTACAGCAATCCTGCCCTGCACTACAAGAGCCACTGTAGCCCACGTATCCTTGACAACATCACACCCAGAAACAAATGTCACAATCCAACTTGCCCCACTTCTGACATCTGCACTCATGCCTGCAGTTGTATGCATGCAGAAGGAGAgaagataaatatataaaaggaaatatctataaaatattaatgctatttttttttttaaaactgtgcaTTTGAtctaatgtaaaatatattaattacacaTGCAGGCATGTACTGATGTactgaatgtttatagctgcataaaatgtttatatgtacaCTATGTTGTTCCATTGACcctatataaaatacatttaaatatacatttatttcatttcatttcacttcatttatgcagttattgcaGTGTTCCAATGTTTTAACCTAATTTCTATTTATTCTGTCAGAAGCATATATACAATTAACATACACAGTCATTTCAACACGTTTATTTGTATTGACAAGGAAAACtggaaaacctgtttacttgGAAGTGAAAgagcattattattaataatcattaatgttatataaataaatacatattttgtaGAACACTTCATAAGTTCTTCAGAAAaaagtatttgtaaattaagctaTAAATCTCTATAATTCCTCCTTTCAGAGATATGACTTCATTTTCAGAGGAAGGAATTTGTGGTTATGTGTGAACAATGTAAATCTACAGAGTCTATGTATCACAAGTTTCACAAAGTAACTATGGAAATGCTTCAGTTTCCATAACTGGAATTGCTTTTTACTTTATGTTGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU59860 lncRNA downstream 59785 21517815 ~ 21518078 (-) True G50626
TU59858 lncRNA downstream 62221 21515152 ~ 21515642 (-) True G50624
TU59853 lncRNA downstream 65041 21512605 ~ 21512822 (-) True G50619
TU59831 lncRNA downstream 155734 21387743 ~ 21422129 (-) True prkceb
TU59644 lncRNA downstream 192366 21346142 ~ 21385497 (-) True G50433
TU59884 lncRNA upstream 4169 21606428 ~ 21610897 (-) True G50647
TU59895 lncRNA upstream 57399 21659658 ~ 21737394 (-) True G50656
XR_004577805.1 lncRNA upstream 165555 21767814 ~ 21786645 (-) True LOC117596829
TU60045 lncRNA upstream 279627 21881886 ~ 21882106 (-) True G50802
XR_003404488.2 lncRNA upstream 291275 21893534 ~ 21899039 (-) False LOC113544235
XM_026935733.2 mRNA downstream 3782 21569456 ~ 21574081 (-) True calm2a
XM_034301822.1 mRNA downstream 9621 21562717 ~ 21568242 (-) True stpg4
XM_026934302.2 mRNA downstream 51141 21522208 ~ 21526722 (-) True mcfd2
XM_034303051.1 mRNA upstream 9404 21611663 ~ 21645512 (-) True plekhh2
XM_034303052.1 mRNA upstream 9404 21611663 ~ 21645498 (-) False plekhh2
XM_026944078.2 mRNA upstream 306722 21908981 ~ 21910793 (-) True LOC113544981
XM_034301397.1 mRNA upstream 433573 22035832 ~ 22123649 (-) True LOC113540944
XM_034301391.1 mRNA upstream 433573 22035832 ~ 22085504 (-) False LOC113540944
TU58946 other downstream 1208434 20357988 ~ 20369429 (-) False gng2
TU58944 other downstream 1208766 20357934 ~ 20369097 (-) False gng2
TU58943 other downstream 1208766 20357988 ~ 20369097 (-) False gng2
XR_004577815.1 other downstream 1910202 19635838 ~ 19667661 (-) False atrn
TU58169 other downstream 2258130 19316487 ~ 19319733 (-) True G49195
TU59887 other upstream 9515 21611774 ~ 21614267 (-) False plekhh2
trnai-uau other upstream 293925 21896184 ~ 21896277 (-) True trnai-uau
TU60082 other upstream 347596 21949855 ~ 21950189 (-) True G50837
TU60345 other upstream 433026 22035285 ~ 22101383 (-) False LOC113540944
XR_003404067.2 other upstream 1172096 22774355 ~ 22788783 (-) False znf318

Expression Profile