RNA id: XM_026935843.2


Basic Information

Item Value
RNA id XM_026935843.2
length 6200
RNA type mRNA
GC content 0.48
exon number 19
gene id zmiz1a
representative False

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 15873317 ~ 15986353 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGCACCATCCCCCTTTGCAAGTCTGAAATGTGAGCCGCCTGCATATTTCCCTCTTGCTCCCTTCGGGGCAAAGTGGCACGCCGTGCATGTgtatgcgagtgtgtgtatgtgtgtctgcgctcatgtgtgtgtctgtccatccatctcgATGTGATGGGGACATTAGGCAAAGGTGCAATGGATcactagagagagagactggggaCATCAGTTACATCCAAGcACTGCTGTCGTCCTGGTGCGAGGAGCTGGGTCGGCTGCTCCTGCTGCGGCACCAGAAGAATCGGCAGAACGAACCCCAGGGCAAAGTGCCTATGCAGCCACCCATGAACTCTATGAAGCCGTCGCTCTCCCATGGTGATGGGTCCTTTCCGTATGACTCCGTTCCCTGGCAGCAGAATGCCAATCAGGCCCCAGGCTCACTGTCAGTGGTGACGACTGTGTGGGGGGTGACCAATACATCACAAAGTCAGGTATTGGGCAACCCCATGGCTAACACCAACAACCCCATGAACCCTGGAGGCAATGGAATTGGGTCTGGCATGTCTGCCAACAACCCAGGGCTGAACTCCCCTCAGTTTCCtggccagcagcagcagttctCAGCCAAAGGTGGCTCCAACCAGGCCTACATGCAGCAGGGCATGTATGGGCGAGCAGGGCATCCAGGAGCTGGAGGATTCAGCGGGAGTTATCCGGGTGGTCCGAATGCCCCAGGTGGCATAGGCATGCCCCCTCACACCCGGCCTCCGTCCGACTTTACCCAGCCTGCTGCTGCCGCCGCTGCTGCCGCCGTCGCCGCCGCTGCTGCCACGGCAACAGCCACTGCCACGGCAACTGTGGCTGCCCTGCAGGAAACCAACAAGGACATGAACCAGTATGGACAGATGTGCTCATCGTTTCAGATGGGCCCTACGCAGGGCTATAACAGCCAGTTTATGAACCAGCCTGGACCCCGGGGCCCGCCGGCCATGGCAGGAGGCATGAACCCAGCTGGAATGGGTGCTGGCATTAACAGCTCCAATATCAGCGGCCCTCCAATGGGCATGAACCAGCCCCGGGCACCAGGAATGGGGCCGTTCGCTGCCCATGGCCAGAGGATGCCCCAGCAAGGATATCCAGGCCCCAGACCTCAGTCCATGCCGATACAGGGCACAAAGAGGCCCTATCCTGGAGAGCCAAACTATGGGGGACAGCAGTTTGGACCTAATGGCCAGTTCCCCAATCAGCAAGGACAGTACCCAAACCCTAACGCCTCCAGAGCCCTGCCCTCTCCCAGTTACCCCGGTCAGAGGATGCCAGGCCAGCAGGGCACAGGCCAGTACCCGCCTTCAGGAGTACCCATGGGCCAGTACTACAAGcagGAGCCATTTAATGGCCAAAATAACAATTTCTCTGGAGGTAGTTATGGCTATAATCAAGGCAATGGGCCTCCTCGGCAGGTTGTGAACTATCCTCATTCACCCGTTCCTGGGAATCCCACACCACCCATGACTCCAGGAAGCAGTATCCCTCCATACCTATCGCCCAACCAGGACGTCAAGCCTCCGTTTCCCCCTGATATGAAACCCAATATGACATCTCTGCCTCCACCACCGACTAATCCCAATGAGGAGCTGCGGCTGACCTTCCCCGTACGTGACGGTGTGGTGCTCGAGCCGTTCAGACTGGAGCACAACCTGGCTGTCAGCAACCACGTCTTCCACCTGCGGCCCTCTGTTCATCAAACACTCATGTGGAGGTCTGACCTGGAGCTGCAGTTTAAGTGCTACCACCATGAGGACCGGCAGATGAACACGAACTGGCCAGCGTCGGTGCAGGTCAGCGTTAATGCCACGCCACTCACCATCGAGAGAGGAGACAACAAGACATCCCACAAACCCCTGCACCTGAAGCATGTGTGTCAGCCGGGAAGGAACACCATCCAGATTACCGTCACAGCCTGCTGCTGTTCTCACTTGTTCGTGCTGCAGCTGGTGCACAGGCCGTCAGTGAGATCCGTCCTGCAGGGTCTGCTCAAGAAGAGGCTCCTGCCCGCAGAACACTGCATTACCAAAATAAAGAGAAATTTTAGCAGTGTAGCAGCGTCCTCTGGGAACGCCACACTGAACGGAGAGGATGGTGTGGAGCAGACGGCCATCAAAGTGTCCCTTAAGTGTCCCATAACATTCCGGCGGATCCAACTTCCAGCCCGGGGACACGATTGCAAGCATGTGCAGTGTTTTGACCTGGAGTCCTACCTGCAGCTGAACTGTGAGAGAGGGACGTGGAGGTGTCCTGTATGCAATAAAACCGCGTTACTGGAAGGTCTGGAAGTGGACCAGTACATGTGGGGAATTCTCAATGCCATCCAAAATTCGGAGTTTGAAGAGGTCACCATTGACCCCACATGTAGTTGGCGGCCGGTGCCCATAAAGTCTGACCTGCACATAAAGGAGGATCCAGATGGCCCTCTGGCCAAGCGCTTTAAAACTATGAGTCCCAGTCAAATGATCATGCCTAACGTGATGGATATGATTGCTCAGCTGGGGCCAGGACCCTCACCCTACACCTCCCTCCCGCCTCAGCATGGCGGGAACAACACAGAGTACACCAGCCAAGGCAACAGTTACCAGGGCCATGGAAACTTTGACTTTCCACACAGTAATTCTGGTGGAGGAGCTCCAATAAATGACTTCATGCATGGCCCTCAGCTTTCGCACCCTCCGGATGTACCCAACAACCTCATGGGTCCAGACAAACCTCTGAGCCATGGCATGGCCGACTCGATGCCTCATCCTGTGAGTGCTGAGCAATCCCATGCTTCCATGCCACCAGGCATGCACGTATCGCCCCACCCCAACAGCCAATCTGCACAGCCATTACATCACAGCGGCCCTTCATCTGGCCCGCCCCCACGCCAAGCCCCACCCACACAGCAGCAACAGCCTGGCCCCAACAGCCACACGCACAGTGACATGACCTTTAACCCTGGTGCTGAGGGCCAGGTGGGCAGTCAGGGGGCAGCAGACATGCCCGAGCCCTCTCTGGAGCTGCTGCCCGAGCTGGCCAACCCAGATGAGTTACTGTCATATCTGGACCCTCCGGACCTCCCAAGCAACAGCAACGACGATCTGCTCTCCCTCTTTGAGAACAACTGACTTCCCTAACCCACCTTTACATGAGGCACTGACAAGTTCAGCTGTCAGGAGTCAAGCAGAACCCTGACCACCAATTCAGTACTTTACAACCGCGAAACACTCGTCCTCCCTCTGCCTCTACTTGTGTAAATATCTCACTCTTTTACGGACGTCCTTTTTCCACACATGTATGGCAGCCATGTTGGTTGGCACTAAAGTGATATTTCAATactaatatgaaaaaaaaactgtgcagcTATAATCATAAGAATATATGTCACACAGAACTGTATGTGTGCTCACTAGGAAAGTgttgtagcatttttttaattcagattttttttccttttgtgaaAAGCAAGAcctgaatagaaaaaaaagatacttcCTGTACTGGCTTATGTGTGTGTCCCCCATGAGCATTCTGAGGTTTGTTCTTCCAAGCTTTATGTCCACAGCTTCCCAAATCTCCATCTAGTGTTTTTGACTGGATGTCCTCACTGTATATCAGAAGTCCCTTGGAAAAAGCACAACAGCATTCAGCAGAACTGCAACAGGAAGACTGAGAAGGAAAACATCACAGGAACAAAAGGCTGCATCACAGTCACTGCGAGGTTTAGCATCATAGCAATGTGGTACTCCCATCTCACAGACTAATGCCGGGCCTCTGAAGTCCTCTGTAGCTCATGTGGAACGTGTGAACGCGTGGTGTGTGGGAATCCCCTTCAGATCGGCATATCATATCTCATTTTGTCCATCATATTCACTCACGAGTGTTGTGTTCAAATCAGAACAAGTTCCCGAGGGCATTGTGACaattcatttcactgttttttatAGGAACACCAACATatcaatactgtgtgtgtgataacGTGCATCAATAACCAGCACTGTACCTCCTTCACAAATCTCTCCATCTCAGAGTACTGTGGAATCAAAGTCGGTGGGCAACGCAATTCATTTTTGTAACGTGAGAAGTAATGCAATCACTTTTTAAAGAGTAGTTTGAGTGTTAAAACATCCGTATGCTCTGTCAGCTGTCTCTTCTGGGAGTCTTTCCCCATTTAATGCATGAGCTTTGTCCCTCCCAGGCCTGTGATGTCATGAATAACAAGAACTCCGTGTGTGCATACAGTGTGTTCATTGTGCACTCGTGCCAATCCCACGTTGTTTTTAGTGACCGAACCGAAGTGTagactgattttcttttttaaatcagtgcgTTCAGACGTGTTCCTCTGtcctgtttttattcattttaaacatgaactATGATCATGTAAAGACTACGTTTGTTATGCGCAATATATTGTTCATGATATAATTCCTGTTTTCCCCCTGTTGGTGTAACTCTCTAAATGTACAGTGTATGTGCGTTTATTACAAAATGGCCATGTATTACCAAAGTTCTGCATAGTGATTGGAGGAGATGGCCCAAACCTGGCATACTAAGCTAATAATCTTCTTTTGAGCTGGTTAAGCATGTGACACCTTCATTTCCATCAGTGCGTTCACACAACAATATAATTATCACATGCTATTGTATGGTACAATAATTTTTATGGTCTTTGTTTTGTAGAGGTTACACGTCTATGTACAAGTCTACataatctgttttatttttatccccATAACCCCCTGAAAGAGTCTCAGAAACGATATTTTCGCCATGTGTGTACATTTTGGCGTAAGGCCCAACTCGCCTAGTCGAAAAGGAAACCACTTAACACATCAGATTACTGTTTAACAGTTTTTATATTATGAAACACAGTATAAATTCAGCATAATAGGAACTGCATATAAATATGCATTACTCCTTGCTTATTTAAATTCTGTTAATCAAcagaatgtactgtatgtttgctttaagttttttttcttttttgagttAGTGCTCAGACAATACATTGACTTGTTTGAGCTTCACAAATGCATACAGCTGAATACCTTTcacaatgtattttatttttcaaccttcatttccattttaaattattttgtatcACCGACTGTTGGTGTTCAGTTATGTATAGACCTTATGTTCGTTGCTGACGCATTTTAAGTCCTTCTAAACAGGCAGATGTGTTTTAGCCTGTAGCTCCAGTTGGTTTGTAATTCACttgtatgtctttttttttttttttaactgatgcaCTGCCACATTTTTGTTCTTACTTTGTAGACACCTACAGacagaaactgaactgaactctcCACTTGCACATTGGTTGCACTGCAGGTTGTTGAGATGAGTCCCTGTTTTAGACCTGTCACTTACTGTAGCTGTACAGTTATTGGAGAAGAAAGCGAGTCGATGTGATAAGACAGTTACAGTGAAATGAATTAGATGCTGTTTGTCCCTGATTCAGCCACAGGTCTCAATGGGAAACGGTTTGAAAGAACACTCTAGCAGGGGACATAAGGGATGCATGTACATATGTAAATGACATAGAGACACGTTAAcagaaatgtattcattttccCCAGGGGAATGTGCATTGTGTATTTAGAATTTGTAAAGCTTGCAACCTCCTATCAGACTCGAATTGGGTAAAATGAATCTGTGTTTGTTAGCGTCTGTGGAacctctttccatttttttttgttcttttgtttcacttatgtaaaatatttccaaTGCCTCCTAGAAAAGGGGAATTATGGGGGCAAAGAGACACACTTGTTTCACCTTTGTGTAATTAGCTTCCGTGTATTGCTCCATTACCTGTGTACTCTATAAGGTGCTACAAAAGATGAAGAAAATCCTGGGGAATAATTTGGAGGACGGGGCATGGGGCCTGGAGTGGTTCCAAAAGATTGTAACCAAATTAATAGTTTGTACAATTTTGATATCAcgatcagaggaaaaaaaaaaggtacaatcTGAGGTGATTGGCGCCTAAAGTGGCagttgtcttttttgttttgtacattCTGTGTACAATCATTTCATATTCTAAACTGTTCGGAAGAAAATAAACTAATTGTGATTTTTAGTCTTGCAAAACTGTATGTAGTTAGATGCTGTGACATCCTAATATTTATCTAATAAATATGTATTCAGATGAAACACGCTCA

Function

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU55651 lncRNA upstream 61850 15893581 ~ 15896079 (+) True G47071
TU55615 lncRNA upstream 242405 15711137 ~ 15715524 (+) True G47043
TU55393 lncRNA upstream 484059 15473201 ~ 15473870 (+) True G46849
TU55373 lncRNA upstream 538287 15419029 ~ 15419642 (+) True G46833
TU55286 lncRNA upstream 873619 15079813 ~ 15084310 (+) True G46765
TU55664 lncRNA downstream 46951 16033304 ~ 16035339 (+) True G47084
TU55821 lncRNA downstream 117483 16103836 ~ 16104050 (+) True G47224
TU55827 lncRNA downstream 138313 16124666 ~ 16134002 (+) True cxcl12a
TU55863 lncRNA downstream 206342 16192695 ~ 16203524 (+) True G47265
TU55862 lncRNA downstream 207063 16193416 ~ 16203524 (+) False G47265
XM_026945125.2 mRNA upstream 130462 15821093 ~ 15827467 (+) True rps24
XM_034302830.1 mRNA upstream 130462 15821093 ~ 15827467 (+) False rps24
XM_034302829.1 mRNA upstream 130521 15821093 ~ 15827408 (+) False rps24
XM_026943066.2 mRNA upstream 145157 15800603 ~ 15812772 (+) True pald1b
XM_026943082.2 mRNA upstream 145449 15799229 ~ 15812480 (+) False pald1b
XM_034302962.1 mRNA downstream 1086 15987439 ~ 15991054 (+) True ppifa
XM_034302963.1 mRNA downstream 1292 15987645 ~ 15991054 (+) False ppifa
XM_026940448.2 mRNA downstream 70031 16056384 ~ 16057258 (+) True si:ch73-6k14.2
XM_026940430.2 mRNA downstream 86382 16072735 ~ 16075650 (+) False cxcl18a.1
XM_026934386.2 mRNA downstream 138274 16124627 ~ 16133719 (+) False cxcl12a
TU55629 other upstream 160725 15793428 ~ 15797204 (+) False eif4ebp2
XR_004577898.1 other upstream 1590483 14361367 ~ 14367446 (+) False cgas
XR_003404567.2 other upstream 1674761 14213402 ~ 14283168 (+) False slc24a3
TU54033 other upstream 2456883 13498092 ~ 13501046 (+) False pcbd1
TU53738 other upstream 2924681 13032279 ~ 13033248 (+) False si:ch211-223p8.8
XR_003404341.2 other downstream 84361 16070714 ~ 16073067 (+) True cxcl18a.1
TU55689 other downstream 84406 16070759 ~ 16071920 (+) False cxcl18a.1
TU55884 other downstream 248182 16234535 ~ 16236648 (+) False lrrc18a
XR_003403773.2 other downstream 3354997 19341350 ~ 19356098 (+) True sfxn5a
XR_004577568.1 other downstream 3354997 19341350 ~ 19356098 (+) False sfxn5a

Expression Profile