RNA id: XM_034302744.1


Basic Information

Item Value
RNA id XM_034302744.1
length 4295
RNA type mRNA
GC content 0.43
exon number 7
gene id ppm1k
representative False

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 6662378 ~ 6680286 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AAGGGAGTGATTTTAGGAAAGgaaaCTTGTGGATTATTTCAGGAGACCCTGACCTACTTACTGCTGCTGTATCTGGATCAGTCTGGTTTGATTAGTATTTAAAGGAGCTTTTTTGGACCGTTTGGTATTTCACAGTCTGTTTTTGAGCTATGTCTGTGGCGGTTCTCATGCAGCTGGCCTCGCAAGGCGGGTCGCGCGTGTGCCGCAGGATGGTTCTAAACAGAGTCCACCTTATTCAGGACCAGCTGATGCGAGCACTGCACAGCCCGTCAGGCACCCGCGCCAGCAACTCACGCTTTGACCCGGACAGCAGTGGACGCCCCACCACCTGGGACTCGTTCGGCATTTGGGACAATCGCATCGACGAGCCGATTCTGCTGCCATCCAGCATCCGCTACGGCAAACCCATCCCCAAAGTCAGCTTGTCCAAGGTGGGCTACGCCTCACAGATCGGCCAGCGCAAAGAGAACGAGGACCGTTATCAGGTCTCGCAAATGACTGACAACATCCTTTACTTTGCTGTGTTCGATGGCCATGGTGGCGCTCAGGCTGCTGACTTTTGCCATAAGTACATGGAGCAGCATATTAAAGAACTCATGGCAAAAGAGGACAACCTAGAGGTCGTCCTGACAAATGCGTTTCTAAACGTGGACAAAGCATTAGAGAAGCACCTTCACTTATGTGCAGATGCCTCGGTGCTAAGCGCAGGCACCACGGCTACGGTGGCGCTGCTGAGAGACGGCATCGAACTGTTGGTGGCCAGCGTGGGTGACAGTCGTGCCATGCTCTGCCGGAAGGGCAAAGCGCTCAAACTCACTGTGGACCACACACCTGAGAGGAAGGATGAGAAAGAGAGGATCCGTAAGAGTGGAGGAATGGTGACGTGGAACAGTCTGGGTCAACCTCACGTAAACGGGCGACTGGCCATGACGCGGAGCATCGGAGACTTCGACCTGAAAAACACAGGTGTCATCGCCGAACCAGAGACCAAGCGGATTTCTTTACATCACGTACACGACGCCTTCCTCGCACTCACCACAGACGGCATCAATTTCATCATGAACAGCCAGGAGATCTGTAACGTCATTAGCCAGTGCAACGACCCCAAAGAGGCAGCACAGCGTCTCTCTGAACAGGTTTTGCAGTACGGCGCAGAGGACAACAGCACAATCATCGTGGTGCCGTTTGGCGCTTGGGGCAAATACAAGAGCTCGGACGTCAGCTTCTCCTTCAGCCGCAGCTTTGTGTCCAGCGGCCGTTGGGCATGAATGACTGAAggacagagagtgaaagagagaaagtgaaagaggacggaggaggaggaggaggaggagatggggtgtttgggggggaaaaaaatcagtggaCCAGGTGGGAGGAGGATCCCAGAGTGCAATAAGTCCAGGGTGTTATgggaacagaaagaaaaagactaaCATTTAACTTGACTAAAACTTTGTATTCAGACAAAGACACGGTCGGTAAATTTGTAGTTCTGATGAGAGACAGTGACGCAGTTTGTGTGAACAGTACTGCATTAGGAGTATTCCAGTGTACATCAGATCTGCTTTGCTGAATGAAAGCAGTGCTTTAGTGACCAGTATGTGCGCCCTAAtcagtatttctgaaactgaaCAAGACCAGTGATGCCACGTGGCCCATCGTTTGCCATATGAGCGGTTGTCTAGTTTTACCTCACAATGTTTTgaagtgtgtatattttataactGTGAATAGACAGTagggtttttttaattattattattattattttcatgcaCATTTGATGGGTCAAGTACACTTGCACTTTGTCACGATGATTCTCTGTGTCTCTTGCTTCCTTGGTTTAAAGTGCTTCTTCGTCATTTCGATGCTTGGCTGAACCATTTCGATCATCTGAAATTATTGGACTTGATAATTAAGTCATGGCCACTATCTCTTTCCCACGCCTTACTAAGACGTGACCAGGcgttattttttataaataaggtATGTCACTAGCGCTGCTCTGTACAAACCTGTAACAACATTCCTTTAATAATCAGATAAAAAAGAGCCCAGCTATACACTGTACTAGGATACATTTGCACTTTTTAGTAACCAGCTGATTAGCAATACAAGAGCACAGATGCTTCTGTATCTGCATCACAACCATCAAATTCACATAGACTGTTCTGTGATGTTTTATTCACATTGAACGTTTACTGAAGTTATTGCTGAGTGAATAGGAACAAACAGGGTGATGTTGCACTTATCCAGGGGCAGCtgataaatgtttaatcatcttaaaggtgcagacagctgtttttaaaagtatttaagaTTTGCTGCCTTTCTCCTCACATTTCAGCAGCTGTCAGTAACGTATCCGCCACACGCAGCTCGTAGAGTTTGGAATGAGTGGTGAAATGGGAAAGATGTGCCGTGGACCATTAAGTTTCAACCAATGAGGACGATGAAACATCTTTACCTGCCAGGAAGTCTTTTAAAAATCCCCATCTTCCACCAGAATTCAGACGTTTTAGCCAAGAGTTTTTTTGGGGGTGTGGTTTTGCACTGAAGGAAATAGCTAGCTTCTGCTACCTTCTGCCAAAATCGCACAACTTTATCTGTTCAAAACCGTCTCACAATGAACTTAACTTTAAGTTGATCTGGACCACTGTTAGCACAATGTTCAGCTCATCTAGTGCCTTTTTGTTTCAGTGGTTAACTCTCCCCATGTGAGCACAGTGATTTATAGTTTAAAACACTAATATAGACTCCGTAAATATGAACTTATGGCTTGAgctcatacacaaacacatttgtaAGAGAACGGTCTCCATAAGTGCATTTGGtacaggttttgttttttactgtatgttttgtatataataatatttatatattttgatcTTCAAGAAATCtatatatacattcatatatatatatatacacacactgttgtatAGATGTGAAGATGTGTCTGGCTTTATTAAAGTGTATTAGACTGTAACAGTGAACCAGTTCTGGATTGAGGACCCTCTTATCTGTGAAGTTATTTGACAGATGTTTTGGtacaaaaaaaagcttcacTTTTTTCCCAACTGTAGTCAGTCATTATAATGTCAGTTGCACAGAATCtgcattcaagattttttttctttccacaaaaacaaatatttattttgttgtccatttttgttgttttcttataTACAGGTCATTATGATGTCTAGAAATAGATGGTGAATGCAACTGGATTTGATGTTTAATCCAAAACTGACCAGCTACTATCTGGCAAAACGCAGTCTGAGCTGAacaaactggtagaccatctttaccAGCTGGTTGGTTATATTTCAGCCTCCGTATTACTTCACTAAAGTGATTAATAAATGGTTTAAACTGCtcgagtggtgcaacagaaaagcgctCAATCTCTTGTCATAAGTTAAAAACCAGACGATGCCACAGctgtccaagagagcaaaattggccatgtgTCAATCCCCATGTGTCAGTCGCAAAGACTTAAGCCAATcatgagcatctgtgagctcatgtatgcagaagagggcggacAGCGCTTTCTTCAGAGCGTcccactgccctgtgatgcagcatgagcagcagtaaCAGAAAGTAGGATCAGTAACAGAAAGTTCACAATGGTTTCCTTTCTGCAAACACTTAGCAGCTGGCACAGATggtctgcctgtgttttggcagctggtaccttttcagaccaagctggatttttcagtgTTGAAACCGGTTTGTTATACGTCTTCCTCATGTTTTTCACCCCGTTTTACTGTTCCTGTTTCCTCACTGAGCCCACAGTACTAAACTCTACCACTCTGTACATTTAATGCACAGCTTCCAGTGCTTTAATCCAATCAGTTTAACTGGTAGAGAGAGTGTTTAATGTGACGGTTGCTCTACTGTTGATTTTGTGAAGCTCTGTCCAGTTCAGTTCATTCTTAAACCCTTTTGACATTAACTGATTGTATTCGACCAGGGGAAATGTggtgattttaaaattctgcaGGAATCAACTCATCATCCCTACAAGTAATGTatcactccatcatcatcatcatcactccatGCTCtcttgaaataaaatgtgaacatattaaataaaatgtaagacaGTCACTGTACCTTTTACTACTTTACCATTGCATGACTCCATTGCAGTTGTATGAATATGTGCTCTTCACTTTCAGTTATTGTACTGCAAAAGTGTATTTTTGTGCAGCTTTATTAACTTGTGAATAAAGTTTCAGCAGAAACAGGAATGTAACTGA

Function

GO:

id name namespace
GO:0007507 heart development biological_process
GO:0031016 pancreas development biological_process
GO:0043066 negative regulation of apoptotic process biological_process
GO:0048565 digestive tract development biological_process
GO:0006470 protein dephosphorylation biological_process
GO:0001889 liver development biological_process
GO:0007420 brain development biological_process
GO:0046872 metal ion binding molecular_function
GO:0004722 protein serine/threonine phosphatase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU49280 lncRNA upstream 60385 6601912 ~ 6602163 (+) True G41654
TU49279 lncRNA upstream 63581 6598703 ~ 6598967 (+) True G41653
TU49277 lncRNA upstream 77100 6584855 ~ 6585448 (+) True G41651
TU49224 lncRNA upstream 110433 6519059 ~ 6552115 (+) True G41600
TU48931 lncRNA upstream 358443 6303897 ~ 6304105 (+) True G41345
TU49521 lncRNA downstream 271106 6951392 ~ 6968839 (+) True G41857
TU49621 lncRNA downstream 336418 7016704 ~ 7016925 (+) True G41951
TU49784 lncRNA downstream 667873 7348159 ~ 7393784 (+) True G42093
TU49791 lncRNA downstream 680914 7361200 ~ 7364931 (+) True G42098
TU49923 lncRNA downstream 741805 7422091 ~ 7422296 (+) True G42208
XM_026933194.2 mRNA upstream 116493 6466066 ~ 6546055 (+) True fam13a
XM_026933204.2 mRNA upstream 116493 6466066 ~ 6546055 (+) False fam13a
XM_034302683.1 mRNA upstream 116493 6470480 ~ 6546055 (+) False fam13a
XM_026934053.2 mRNA upstream 198563 6418262 ~ 6463985 (+) True zgc:154142
XM_026934248.2 mRNA upstream 256945 6398894 ~ 6405603 (+) True gprin3
XM_026934017.2 mRNA downstream 855 6681141 ~ 6699519 (+) True abcg2d
XM_026934026.2 mRNA downstream 855 6681141 ~ 6699519 (+) False abcg2d
XM_034302025.1 mRNA downstream 38565 6718851 ~ 6748064 (+) True papss1
XM_026933883.2 mRNA downstream 99120 6779406 ~ 6795508 (+) True dkk2
XM_026938759.2 mRNA downstream 164586 6844872 ~ 6917655 (+) False tbck
XR_003404319.2 other upstream 1305851 5263582 ~ 5356697 (+) False znf827
TU48562 other upstream 1320798 5318534 ~ 5341750 (+) True G41047
TU47789 other upstream 2827937 3831949 ~ 3834611 (+) False LOC113545357
XR_004577910.1 other upstream 4496764 2165623 ~ 2165784 (+) True LOC113546173
TU45995 other upstream 4571327 2085465 ~ 2091221 (+) False stox2a
TU49753 other downstream 523664 7203950 ~ 7221023 (+) True G42075
XR_003404394.2 other downstream 968912 7649198 ~ 7666033 (+) False naa15b
TU50445 other downstream 1785461 8465747 ~ 8466312 (+) True G42685
trnak-cuu other downstream 1789338 8469624 ~ 8469696 (+) False trnak-cuu
TU52056 other downstream 3871973 10552259 ~ 10558295 (+) True sprn

Expression Profile