RNA id: XM_026935928.2


Basic Information

Item Value
RNA id XM_026935928.2
length 7322
RNA type mRNA
GC content 0.45
exon number 12
gene id tet1
representative False

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 18852702 ~ 18883431 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGGAACGTCACTGTAGCTGAAAACATGCCCTGGTTTTATTGGACTGGACGCTAAATAAGGATGATCAAATTCCATATTTGAAAGATCTTCAAGCTAAAAATTATCttaactccatttcccatgtgtgCTGACTCATCTTTTAACCCCCTCACTCTCATGAAGCTTAGCTATGCCTCATACTGTCAAACGACCAAAGAAAGTACACCCcccaataaaacaaaatgttcgAAAGTTGAAATCATTTACTGATAAAAGACGAGTGGTGAATTCAGTCAATCCCAGGGGGCCAACAACGCGTACACGGCAACCAGTAACCAGACAGCCCAAAGCAAAGAATCAAGCAACCAGGGTGGTCCAGGGAAGTGCCATCAGCAAGGTCACCAAGAAAGCAGTCCCAGGAAGAGCAAGCAAGACCAATAATACATTTAACATTACAGGATCTGTCAGGTGCACACGTAGCTCTCAGACCCAACATGGCCTGTTTGCAGACCTCGCTGGCAGGAGGAGGTCCTTTCGAGGCAGTCAGTTGTCCCAGATTGTCCTGCAGGAAGTGAAGTCTCACAGGAGGGTGGTCACAAAAAAGCCCAACAAAGGCCACGAGACCAGGGAACAGGAGACTATGAAAAACCCAGAACTTTGTGACCCCAAAAGTGATGTCCAACAAAACAAGGCACTTGATCCCGACAGAGAGCATCCCCCCTTTAACCCAGGCTCTGAAGAAACAACAGTCGAGGAGGACAGAGAATCACTTGTTCTCAATGCTGCTaaggtggaggaggagaaggcAGAGGTCACCTCTGAAATGGTAGAAAGCGAAAACAACCCTGGGCCCATTCAGAACACTGCCAAACCAAGCATTGAGTTCAGTGATTTGCTTGTGAACTCGTGTGACTCAACTGTTAAAGTGGACTTTGTTTGTACACTTAATACCTCAGACCTGACAATATCCACGCTTTCACAGTCACATGATACTGATCCTCAAATAACTCCAAAAGGCTCTTCTCAGCCAGATGTGTTTGTGGTGCCCCCTGTAAATGAATTACTTAAAGAATCAGCAGCACTTCAGCACACTCCAGACCCTACCCAGGTGGCGGACAGTGAGCATCAGTGCACCTTAGACCCGAAAGCCAAAGACGTGAATGACGTGGATGTGAAAACCAAAGATGCAAATGACAATGATGATGAGTTGTACAACAAGAACGAAGGAGCGCTGTCACTCCTCTCATTGAGCGCAGGCTTTTACTGCAGCTCTCTGTCCGGCCTGGACTGTGAGtcacaaacaccaacatgttTCCTAAATAAACTGTTGAGCAGCTCAGAGAGCACCCAATCCTCTTTTGACACTGAGTCAGAGGCTGGAGGTTCAGGACTGGCTCCAGGACCTGGGGAAGCAGGTGCTTCTTCCCTCCTGGAGGCAGAATTACACCAGCATTTCCCCCAAGTtcaggagagaaagaagaggaggagatgtGGGGCATGTGTGCCTTGTCTTCGCAAGATCAACTGTGGACAGTGCAGCTGCTGCTTAAACCGAAAGACTGGCCATCAGATCTGTAAGCTCAGGAAATGTGTGGAGCTGAAAAAAAGGCCCTCTCTGATCTCTGCTGGAGAGGTGAGGTGCAAAGATCTTTCTAAACCACAGAAAAACAACCGAGTCTCCAAGGTTGAGTCACAGGGCATCTCAGTAAATGGCACTAGCTCAGagcagatggaggaggaggtgccAGAGGACGAGGCATGTGATGTATCTCAAGAACACTCTGCTCCACCTGACTCGCCCACGCCTCTCCAGCACGGCCCTGCACCAACACCAGCTGAGAGTGAGCTCCGGCCTGCTGTCAGCCACCATGCACTTCCTACTCACCATGACTCTCACAATGGTGCTAAACATGTAAAACCAAACACTGAGAAACATACAGATCCCACCAAAACACAGTCTGAGCCCCAAAGGACTTTTAACATGCTCACCAGCATTCAGCCACCTGAGGCACTTCCTGAAAAGATGGAAAATGGAAAGATCCAAACGCCAGATCCAAGCATGGTGGCAGATGAACAACTTACATCCAACTTAGGTAGTAGTGTCTACTTTGAAGATGCTTTGTCTACACTAGCAACTGTAGTATGTTCCTCCATCACTGACAGGAAGGCTTTGGAGGAGAAGCTATTTGGTCCACAGACCTCAGAAATCTGTTCttttaaaagtgaaagagaagaaCCATATCAGAGTCATAAACACCAAGAACAGACTTTTAACAATCCAGAAGATGACAACCCTCATCTTAAAGACTCAGTTGCACTGTCTTTTTCTAATATCCAGTCTTTAGTTGAGCATAGGAGCATAAGCATTGATCAGGCCATAGCTATTGAGGCCTTAACCCAGTTGGCAGCTACCCCAGAAACAGTGCCCTTCAAAATAGATCATCAGGGTCAGAACCCTCAGAATGAAAGCACATTGTCCACAAACTTTGCATCAAGCAAGCCGATACCTTTTCAAGAAGCTAAATCTATATCAGAGGTTGTTTCCAATAAAGTCCCAGTAATTAGTTCATCATTGCATCAGACATCTGTTATTTGCGGTCCATTCAACAGGCAGGAAAATTCCACCCACCGCagcacccccaccccccacaaACTCTCCTTACATGATCTCTTAAAGGCTAGCTCAGAATGTGAAAAAATCTTGCACACCCAAGAGAATGGAAGATTAAGTCAAGCACTTTGTAAAACAGAGAGGATAGATGGCACTTTTAAAAAGATCAAACATGTTGATAGAACACATAGCTCAAGGAGGAGAGATGAAGAGGAGGTTGCTGCCCAGTTGTTGCAGCTTGCATTCATGATTGAATCACAACACAAGCCAGTATCTTCTGAAAACAGTCCACCCAAGGGAATGCCAGTTCAGACCATAAAATACAATCATCACGCCATTGGGCAACATTtaaaaaggcaaagcaaaacaaaatcaaCCTCCTCAAGTCCAAGAATATCAAAAAAGAGAGCCACTGAGATTGATGGAAGTAATCACAGGATACCACTAGCCAAGAGATCACCCAATGGCAAAGCACTTCTCAAGATGAAGAGTAAAAGGGAGGCCTTGCAGCAAAAAGCAAAATTGCACTCCAAAAGGAATCCGTTTCTGCCCCAGACGCAAATAGACCTGAAAAAATACCTAGGACATGCTAATAATGAAAATAGGCGACTTTTCCATTTCAGCAACTCCCACAAGAGAGAGCACTTAGACCTGCAGGCTCTCATGAGCTCTGGGAACCAGAACACTCAGCATTTCCAAGCAGACCATGCCTCTCTGGGTCACTGCCATGGCAACCAGTGTCAACcaaatggacattgtcatagTCTCACAAATGGTCACCTAGGTGCTACCCAAGGCCAGAGGCACGAATGtgaagaacatttaatttctcaGGTATCGAAAACCCACAGTGTGCTGAATCATGGTGCTAAATCACAAGTTCCCTGTGCCATACCTAATGTCCAAAGGCCAGACCAATCAGTGAGTCCAGGGAGGCAACATAAAGTTAACAGTCTCAACTATGAGCCACGTCAGGATTTCGTTGATCAGAACGGGTATTACAAAGTAGAGACATCCGGCTCTGTGACCATGTTGTCTGTGTCAGCTCAACGTATGGAAAATGGTGATGTAGAATGTCCCGGAGAACACACTCCCACCAAGCACACGCTCAACAGCTTTTTGGAATCTCCATTAAAGTTTCTGGACACCCCAGCCAAGAATCTGATCAACACTCCCTCAAAAAGATTATTGGACCTTCCCTCCTGTGACTGTATGGatCAGATCATTGAGAAGGAGGAGGGCCCATTCTACACGCACCTTGGATCTGGGCCAACTGTAGCGGCAGTACGAGAGATGATGGAGAACAGGTATGGGGAGAAAGGTAAAGCCGTACGCATGGAAGTGGTGGTATATACAGGAAGAGAAGGGCGGAGCTCACAGGGTTGTCCAATAGCCAAGTGGGTTATCCGTCGGGGCAGTGAAGAGGAGAAGCTGCTGTGCCTGGTGCGTCAGCGAGCGGGTCACTGCTGCCAGAATGCTGTGGTGGTCATCCTCATCCTAGCCTGGGAGGGCATCCCACGCAGCATGGCTGACAGACTGTACCAGGAACTCACCAACACTCTCTACAAATACGGATCGCCCACCAACCGCCGCTGCGCCCTCAATGAGGATCGTACCTGTGCTTGTCAGGGTCTGGACCCAGAGACCTGTGGAGCCTCattttcttttggctgctctTGGAGCATGTACTTCAATGGTTGCAAGTTTGCACGCAGTAAAGTGCCCCGAAAGTTCAGGCTGCACGGTGACTACCCTGCAGAGgaGGAGAAACTTGAAAATAATCTGCAGAATTTGGCAACGGATGTGGCTCCTGTGTATAAGAGACTTGCACCTGAGGCTTATCAAAACCAGGTGGGACATGAAGAGTTGGGGCAAGACTGTCGTCTGGGCACAAGAGAGGGTCGTCCATTCTCTGGTGTGACGGCGTGTGTGGACTTTTGTGCTCATgctcacagagacacacacaacatgacCAACGGGAGTACTGTGGTGTGCACTCTGACTAAAGAGGATAACCGTGCAGTGAGAAACATACCAGAGGATGAGCAACTTCATGTCCTGCCTCTCTATAAGATCTCAGAGACTGATGAGTTTGGGCAGGTGGAGGGCCAGAGAGCTAAGATGGAGACTGGAGCATTGCAGGTGCTCTCTTCCTTTCCAAGAGAAGTACGTATGCTGCCTGAGCCCGTCAAGTCTGCCCGCAAGAGAAGACTTGAGGccaagagagagcgagagaagcAGAGCAGCCAGGAAAAGAAACAGGTCATCCCAGCAAAAATGAAGAACGAGCTCCTCAAAGGTTTTAAAAGCACTTCGCCTTGTTTTAAAATGGAGGCACAGAATTACTGTCCACCTATGCGAGTGACTCCAGACATGGAGACACGCTTTTTAAGTTTAATAGATTCATCCAGCCCTTACAGCAACACGAACTGTACTTCGCAAGTGGGCCCTAgtgaacacactgcagcactttCTCCCTACTCTCACTGCAACCTGCCTGCCCCTCCCCAGTTCACAGAACAGAAGCCCTTCAGAAACCAGCAGGATAGCTCCTTAGAAACCAAGTCCCAAGGTTTTAGTGACTACCATTTTGGAGTAAAGACAGAACCCAAGGAGGTGCACTGCTTCCAGGGTGGAGCTTCTCCGAGACTGTTCTCTCCAGCCCAGGCCGAGGGTCTCCACAGCCGACTGAACCAAGCACAACCGAGCCTGGATAACAACTACCACCATGGACCACCCACAACCTTGCGACCCCTGACCCCTGAAGAGGTTAAAGCTGAGGAGGTGTGGTCAGACAGCGAGCACAACTTCCTGGATGGGGATATCGGTGGGGTCGCAGTGGCACCATCTCATGGCTCCATCCTCATTGAGTGTGCTCGGCATGAGCTTCACGCCACCACTCCCATCCTGCGGCCTAACCGCGGCCACCCCACCCGCGTCTCTCTCGTCTTCTATCAGCACAAGAGTCTCAATGCACCAAGCCATGGCTTGCTCCAGTGGGAGGCCAAGATGGCTGAAAAGgccagggagagagaggaggaggctGAGAGGCTGGGATCTGAGGCTGCAAATGTGGGAAGGTCAAAGGCAGTTTCAGAAAGTGAAGAGGAAGATGTGTGGAAGGATGGGAGGGAGGAGCTAAAGATCCCTACTCGCCAATCACTAACAGCTACTCGGGACAACGTCACCACATCATCCCCATACGCTCTTACTTACGTCACTGGGCCTTATAACCGCTGGACGTGACCGTGGCCATGCCACTTTTAGCTAATGCCTTACCTCAGTCAGATCTCTCTGTTTTTAAcacatgcttgtttttgttttttttttaattttgctctaCATCTCAGCTTTTCAAATGATGCTGACTGCATTTGTCAGTTTTTAACTGTGAGATTTGgtgtctacatttttttttctttcttttttttttttttttaaagagatggTGCTCACAACAGATGTTTTAAAAGCTGGTTTTATACAAAGAGATGGAATTAGTGCATAGAAGATGTGACTATTtattctgaatgttttttgcaacagtttgtatttaatttctgGTCCAAGCCTGTTTACTGCAATATTACTGTGTCAACCTGAAAATGATGTGTGTAGTAAACACTCAGAATTGACATTGTAAAATGtgaattctattgtttttgcctCAGCTTGGGTGCTCTTGTCAAAAATTCAATAGTTGCTGTTTTATGGTGCCATTGTAGCAGTAACTTTGAATAACCACATACATTACTATTTTAAAGTATTGTGACACAGTTGGTTGTTGGATAGATTTGAACATGTAGCATTGGTTTTTATCATGTAATGAAGGTACATAGATACTGAATTATTCCCATTACACATTGcgttgtttgaaaaaaaaaaaagcactttgaAACAACTTGACTTTTGAAATGTCCTGTATGCACAGTTTTTGTTTATAAGCGACCTCCTTCATCCAGTATCTGTATATATGCTTTGCAAGTTGGTTTGGAACccattcaggattttttttgaaACCATGCTTATGAAAGCAATAATCATGGAAGGTTATATGCTGCATTTTGATAGTGTGTGGAATCTAAACCATTTTATTACTGGAATTtgcataaaatacaatattactAGTTTCCCAATTGTTTAGGTTTTTTCAACTCCAACAGAGGTTGAAACAAGACttgaaaaacagcattttatatAATCTGACATAATATTTTGTCACATGTGTGCTAAAATGCATCAATAgttttactgtatgtttttccaTGGTGCTTTTTTGAAGACTATACATCCAACTGATAGtagatcattttatttttttttattgatttatggtgttttttatttgaaataaatcatgCCATGTTTTACAATTTGCATTCTTTGTAAATGtctgaatattatttttttttaaaccaacatATATTTGTTAGCCTGCTACTCCATTGCCTGAAATGGAGTACAGTCGTTCACAACTATGCTCACTGTAGAAATGCTAAGTTTTATATTAGACATTTGTTATTGCAATTTAGGAAATCCTcagtttttccagtctttttcCTTAAGGTGCTTAAAGTTTACTGTGTAAATGTAGTATATTATGATGTACTCCCAGAACTTTTATATTGAAAGCATTTGTGtctagaaaaaaacatttcttcatGCCAGCTGTGTAAAGTCACCTTTTATAGTTTTTTCCTGACAGCAAGGCAGAGaaagttcttaaaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU57584 lncRNA upstream 141407 18708032 ~ 18711295 (+) False G48690
TU57585 lncRNA upstream 142331 18708032 ~ 18710371 (+) True G48690
TU57373 lncRNA upstream 150796 18673311 ~ 18701906 (+) False G48482
TU57371 lncRNA upstream 150796 18677230 ~ 18701906 (+) True G48482
TU57372 lncRNA upstream 150796 18700856 ~ 18701906 (+) False G48482
TU57821 lncRNA downstream 28055 18911486 ~ 18912177 (+) False zgc:110319
TU57833 lncRNA downstream 83975 18967406 ~ 18967777 (+) True G48908
TU57836 lncRNA downstream 87367 18970798 ~ 18974710 (+) True G48911
XR_004577820.1 lncRNA downstream 130760 19014191 ~ 19015574 (+) True LOC117596836
TU57789 lncRNA downstream 143576 19027007 ~ 19036636 (+) False selenou1a
XM_026934506.2 mRNA upstream 153023 18695720 ~ 18699679 (+) True LOC113538988
XM_026933079.2 mRNA upstream 160924 18688477 ~ 18691778 (+) True ifit8
XM_026933092.2 mRNA upstream 166091 18683496 ~ 18686611 (+) True comtd1
XM_026944967.2 mRNA upstream 230407 18619229 ~ 18622295 (+) True znf503
XM_034303143.1 mRNA upstream 480213 18227260 ~ 18372489 (+) True kcnma1a
XM_026937057.2 mRNA downstream 7790 18891221 ~ 18895398 (+) True eif4e1c
XM_026937020.2 mRNA downstream 19007 18902438 ~ 18912195 (+) True zgc:110319
XM_026936555.2 mRNA downstream 30151 18913582 ~ 18933062 (+) False ccar1
XM_026936546.2 mRNA downstream 30254 18913685 ~ 18933062 (+) True ccar1
XM_026943192.2 mRNA downstream 56334 18939765 ~ 18956226 (+) True stox1
TU55884 other upstream 2616054 16234535 ~ 16236648 (+) False lrrc18a
XR_003404341.2 other upstream 2779635 16070714 ~ 16073067 (+) True cxcl18a.1
TU55689 other upstream 2780782 16070759 ~ 16071920 (+) False cxcl18a.1
TU55629 other upstream 3055498 15793428 ~ 15797204 (+) False eif4ebp2
XR_004577898.1 other upstream 4485256 14361367 ~ 14367446 (+) False cgas
XR_003403773.2 other downstream 457919 19341350 ~ 19356098 (+) True sfxn5a
XR_004577568.1 other downstream 457919 19341350 ~ 19356098 (+) False sfxn5a
XR_004577569.1 other downstream 457919 19341350 ~ 19356098 (+) False sfxn5a
XR_003403774.2 other downstream 457919 19341350 ~ 19356098 (+) False sfxn5a
XR_003403775.2 other downstream 457919 19341350 ~ 19356098 (+) False sfxn5a

Expression Profile