RNA id: XR_004577821.1


Basic Information

Item Value
RNA id XR_004577821.1
length 2626
RNA type misc_RNA
GC content 0.55
exon number 10
gene id gab1
representative False

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 5756017 ~ 5819513 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGCTCCTCGggctttttctgtgtttttttttcttgctcggCGTCTCCCTGTCCTTCTCCACAGGCAGAAGGAGGGAGGTTGAGTTTTGAGGGAAAAGTATCGACGTTTATGCGCGGCAGTCACCGAGCGAAACTGGAGGCAAGGTCGACGAAACTGGGGCAACTAGTTGGAGAAAGAGCGGCTTGGAGCTCGGAAAGCTCCAGAAAACCACCATGTGTGGGAAAACTGAGGGAAAAAAGCGCTGGAGATATTTAGctttagtttaaaaaacaaaaaaataaaaccccgAGCGCGTTTTCGTCGAAGAACTTGGAGCGTGAAGAGAAAAAACAGCGGATTATTCCCACTTTCCAAGTGTCGAGGCTCACTATACACGGATAATAGCTGTTTCTACGCTTTCTGGGTGCATTTAGACTGACACAGGCTCTTTTTATTCCCCAAGAAGAAAAacgaaaagaaaaagaaaaaggagttAGACTAGCAGGCAGGAGTTTGGAGGAGTGCACGCGCCTGGAGCCACTCAAGCTAATTTTCGTGTACGTGTGTTGGAGCTCAGCGGGTTACAGTGTAATTCACCTCAGCGGGTTACACTGTAGTTCTCCTCAGCGGGTTACACTGTAATTCTCCTCAGCGGGTTACACTGTAGTTCTCCTCAGCGCCTCCTCACACGGCGACTCTGTCCACTTCCCGCAGATCACACGGCTCCAGAAGCGCCTGGGACACGGAGGGAAGATGAGTGGAGGGGATGTGGTGTGCTCGGGCTGGCTCAGAAAGTCTCCGCCGGAAAAAAAGTTGCGCCGTTATGCATGGAAGAAGCGGTGGTTCGTTCTGCGCAGTGGACGACTGACGGGAGACCCGGACGTGCTGGAGTACTACAAAAATGACCACGTGAAGAAGCCCATCCGAGTGATAGACCTGAACCTGTGCGAACAGGTGGACGCTGGGCTCAGCTTCAACAAGAAGGAGCTGGAGCACAGCTTCATTTTTGACATCAAGACCATCGACCGAGTCTTCTACCTGGTGGCTGACACTGAGGAGGAGATGAACAAGTGGGTGCGCTGCATCTGCGACATCTGTGGCTTCAACCCCACCGACACAGATGacTCGGCGAAGGCGTCTCAGCAGGCTGCAGTGGCTGGAGGTTTGGTGGTGGATGTACCTCCTCGTTCTGGGCTGATGGGGTCCTCCGCACTGCCCAGCGTGCCCCCTCCGTACCAGCCGGTCAGCGTTGGACACCTGGACTCGTCCTCCAGCCTGGACGACACACAGGACTACCTGCTGCTGCTCCACTGTGAGAGCAAGAAACCCGAGCCCAGCAGacaTGACTGCTCCAAGTCTACCTCCTCGGAGCCGGACTGCAACGACAACCTCCCATCTCACCGCACGCCCACTTCCTCAACCTCCACAGCCAAGCACGCATCAGTCAACGGCTTCTTCTCTTCCCCACACGCCCCATTATATGACTCGCCTCCAGCAAGGGGGGCCAGTGTGTCGATCGAGGCGCAGGCTTTGTACCAACTTCCCCGCAGCCGGTCTCAGGACACGGTGCTGCTGCCCAAAAGTGCGTCCTTGTCAGGCACCACCGACTCCGACGCTGCCGACGTCTACGTCTTCAACACACCCGCGCGAAAGCCTTCGCTTGAGGCTCAGCTCAGGAACATGTCCGTCAGCTACGACATCCCACCCACGCCTGGCAGCAACTGCACCTATCAGGTGCCCCGCACGGCTGGGGGGGCGGAGGCCTCAGCGTCAGACGTAGTCCCACCTCCTCGACCACCCAAACCCTCAGTAGGGCCGGCGGCCGATCGCTCGCCCACGGACACTTACGTCGTACCTAGGTCAGTGTCGGAGACGGACTCAAACTACTGTGTGCCTTCAGGGCCGGGAGGAAGCAAAACTCTACGGAGCAACACCATTGGCCCTGTGGATTCCTCACGCCTGCGCAAAGattatGGATCACAAGACTGTTATGATATACCCAGATCTTTCCCTTCAGACAGAAACTGTTCATTCGAGTTCAACGAACCCTTCAGCAACTATTTTAAAAATAAAGGCATGCTGCCTGTAGGGAACACTTCAACTGAGGAGATGGATGAAAACTATGTGCCTATGAGTGCTAATTCTCCATCACATCAGCATTCAGGTAGCCTGTCCGAGCTTATCCAGGAGCCCAACTACGTGCCCATGACCCCGGGCACAGTGGAGTTTCCCTCCCTGGGGAAGCAGGTGCCTCCTCCGGCCCACATGGGTTTCAGATCAAGTCCCAAAACACCTCCACGAAGACCGATGCTCATCACTGACTGCCAGCCGCCACCTGTTGACCGAAACCTCAAACCTGACCGCAAAGGTCAGAGTCCTAAAATAATCAGAGCTAATCGGCCTGTCGGTCTTGAGCGAACCGACTCTCAAACCATAGGTGATTTCTCAAGACGTCGTAAGGCCAAGCCTGCCCCTTTGGACATCAAACCAGTCCCTGAGTGTGAGGAGTTTATTACACCAGTGCGCTCGCCCATCACCAAGTCCTTCACCCGGGAAAGTTAGGACCACCCATGAATGCCAAGGTCGAGTATCTGGACTTGGACCTGGACCCTGGCAAATCCACTCGAAAGAGCAACGGGGCAGGCAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU48715 lncRNA downstream 155568 5599984 ~ 5601143 (-) True G41174
TU48653 lncRNA downstream 475488 5277951 ~ 5281223 (-) True G41114
XR_004577874.1 lncRNA downstream 491922 5261191 ~ 5264789 (-) True LOC117596884
TU48505 lncRNA downstream 850525 4904161 ~ 4906186 (-) False tmem184c
TU48496 lncRNA downstream 945286 4809868 ~ 4811425 (-) True G40992
TU48873 lncRNA upstream 56588 5876101 ~ 5876391 (-) True G41300
TU49084 lncRNA upstream 475719 6295232 ~ 6302088 (-) True G41491
TU49177 lncRNA upstream 552142 6371655 ~ 6371866 (-) True G41563
TU49367 lncRNA upstream 716191 6535704 ~ 6538550 (-) True G41731
TU49415 lncRNA upstream 857617 6677130 ~ 6680273 (-) True G41768
XM_026939957.2 mRNA downstream 224231 5498440 ~ 5532480 (-) False hhip
XM_026939949.2 mRNA downstream 224232 5498441 ~ 5532479 (-) True hhip
XM_026938153.2 mRNA downstream 272099 5470957 ~ 5484612 (-) True LOC113541269
XM_026932161.2 mRNA downstream 299531 5445363 ~ 5457180 (-) True LOC113537592
XM_026940360.2 mRNA downstream 323556 5403494 ~ 5433155 (-) True smad1
XM_026941576.2 mRNA upstream 5897 5825410 ~ 5840770 (-) True usp38
XM_026945898.2 mRNA upstream 410131 6229644 ~ 6243139 (-) False il15
XM_026945888.2 mRNA upstream 410131 6229644 ~ 6243137 (-) True il15
XM_034302452.1 mRNA upstream 434010 6253523 ~ 6267711 (-) False znf330
XM_026945875.2 mRNA upstream 434010 6253523 ~ 6263244 (-) True znf330
TU48529 other downstream 528788 5203706 ~ 5227923 (-) False lsm6
TU48528 other downstream 528788 5225030 ~ 5227923 (-) False lsm6
XR_004577883.1 other downstream 1147261 4545584 ~ 4609450 (-) False dclk2a
trnah-gug_3 other downstream 2722158 3034482 ~ 3034553 (-) True trnah-gug_3
trnah-gug_2 other downstream 2722774 3033866 ~ 3033937 (-) True trnah-gug_2
XR_004577908.1 other upstream 1341961 7161474 ~ 7204151 (-) False lef1
XR_004577909.1 other upstream 1341961 7161474 ~ 7204151 (-) False lef1
trnam-cau_1 other upstream 2647471 8466984 ~ 8467055 (-) True trnam-cau_1
trnam-cau_2 other upstream 2648523 8468036 ~ 8468107 (-) True trnam-cau_2
trnam-cau_3 other upstream 2649558 8469071 ~ 8469142 (-) True trnam-cau_3

Expression Profile