RNA id: XM_026936128.2


Basic Information

Item Value
RNA id XM_026936128.2
length 3440
RNA type mRNA
GC content 0.45
exon number 28
gene id lrrfip2
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 23868151 ~ 23999400 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGCTCACAAACGCGCGCATACGCGCGCACAAAAATGCTCCTCACGCTTCAACTTACTTCCGGTACAGTGTATCTGTCCCTGGCATCGGGCGAGTATCAGGGAGGGGAAGGAAGAGAAGTTTGCTGGTACAGGCATGTTCTGAAACCACACAAATATCTGGGTGATTGTCCTTCTCAAGAGGACAGATAGGACACTCCGAAGACTTTGGAAGTTAAAAGAGCCAGTTTACTTCAGGAGTGTGACGTGACGGGCAGTGTCAGTTTCTGCTGTctcactgactgtctgtctgtctctctctcccccaacacacacacagagctttggAGCATTTAGGCCAGTTGGAGCTAACGTTAGCGAGCCAGCTAACTATTGCTAGCCTCTTTTGTGTGATTGAGGCGACATTTTGCTTTCAGACCAATACTGGATAGATACAAACGTCTAATTCAACTGGAGTGCCAGAAAAAGATCTACAAAATCAACATAGATCACCTTGGCCTTGAGCACCAGTCTGTGTGGAACTAGCAACACAGGAAACGACATGGGTACACCAGGTTCAGGACGAAAACGTGCACCTATCAAGGACCGATTCTCTGCCGAGGATGAGGCCTTAAGTAGCATAGCGCGAGAGGCAGAGGCCAGACTTGCAGCAAAGCGAGCTGCCAGGGCGGAAGCACGTGACATCAGAATGAGAGAACTGGAGCGACAACAAAAAGAGTTCACTTACCACCACTCATCTTCTAGTAAAAAGTGGGGACATATTCAGCAGTGGATGGCTGACACAGAAAAGGCCCGCCATGGCAATCAATCCAGAAGCCAGAGTCGCAGAaaggGACTGGAAGATGATGCCGTGTCTGTCCACAGCAGTGGAAGTTACAGGTCTACTGCCTCATCGCTGCGAGGCAACTCGCATTACTCCAGCCTCATGACCAGCCCTAGGAAAAAAAGCTTGGTGTTGGATGGCAGTAGTTCCTCTTTGAAGAGCTCTCATTCCACTAGCTCAGTGTATAATGACCTTCACAGGAAATCTGCGTCCTTCAGGAAAAAACCTGACCTACTGACAGGATTGTATTATGACCAAAGGAAATACAGCAGTCTAAAGAGCTCCAAACCCCCCCCTCCTATCTCCTCCAGTGTCTCTACCCATCAGCCCCGGGCTTCCAGCACTACCTCCACAGGGCTGATGCGTAGCTTCAGCATGGCCTCAATATGTGATGCTGGTCTCTATGGGCCATATGGTTCCAGAGCTacaTCTGAATGCAGCTGGTGCTCTTCTGGTGCTAGCTCCACCCGCAGTAGTCCAGTGTCCTCTTCTGATGACGATTCTGCCAGCACTACATCTCAGGATCACATCAAACATGGAAGGAGGGATAGTGTGTCATCTGAACTTTCTGACATGAGTGAGACTGCCGCTGACTATTTCAGCCGTTCAAACCGCAGAGGTAGTATTGTTTCTGATCTAGATGATCTGAGCATCCCAGATCTGGACATTTTGGACGAAAAAAGTGACAAGCAGTACTCAGATTCCTTCAGTCGGCCATCATCTCGATGTGCCACTCCAGGCCTCTCTGCTGCCACATTGGCCTCTCTTGGTGGTACTTCATCCAGACGAGGCAGCGGGGACATGTCCAGTATTGTCATCGAACCAGATGCCTCTCTCAGTGATCTGAGGGACATCTATGATCTAAAGGACCAGATTCAGGATGTAGAGGGGCGATATATGCAGGGTCTTAAAGAGCTGAAGGAATCTCTGTCTGAAGTGGAAGAGAAGTATAAGAAGGCCATGGTATCTAACGCACAACTTGACAACGACAAGGCAAACCTCATCTACCAGGTGGACACACTCAAGGACGTCATTGAGGAACTGGAAGAGCAGATGTCAGAGCTAATCAGGGAAACAGAGGAGAAgtcaaagGAATTAGAGAGGCAAAAGCATACATGTTCAGTCCTGCTGCATAAACAAGAGGAATTAAAAGAGGGAATCCGTCAGCGAGATGAACTTATTGAGGCAAACCAGAACATTCAATTCAAGGTAGATACACTCACAAAGGAGGTGTTTGACCTACAGGAAACTGTTAACTGGAAGGACAAAAAGATTGCGGCCttagagaggcagaaagagtaCTTTGATTGCATTAGGAATGAGAGGGATGAGCTCAGAGATGAGCTGGCTGACCTCAAGGGGAAATCCAAAACAGTAGAGAAACATGGGCTGGTTATCATTCCTGAGGGCACACCCAATGGGGATGTCAGTCATGAATCCCCAACCTCAGTGATCACTCTTGTCACCCAGGAAGCTGCTCAAATGCTGGAGTCAGCTGGAGATGGACCTCTGGATATTCGACTACGAAAGCTTGCTGAGGAAAAAGACGAACTCTTGTCACAAATCAGGAAACTAAAAACGCAGCtacaggaggagagacagaaacattCTAAGATGGAAAGTGTTTACTCAGATGGAGAACGTCTAGAAAACGGCACTGACTTGAACTTAATTGAAATGCAGAGAGATGCCAACCGACAAATTAGTGAATATAAATTCAAGCTTTCAAAGGCAGAGCAAGAAATGGGTACAATGGAACAAAATATAAACAGACTTGAAGGACAGGTGTTAAGATACAAAGCAGCAGCTGATAACGCTGAGAAAACTGAAGATGAACTAAAGGCTGAGAAAAGAAAACTTCAGAGGGAGCTGCGTGGTGCTCTGGACAAAATAGAGGAAATGGAGATGACCAACAACCACTTGGTCAAGCGACTGGAGAAGATGAAAGCAAATCGCAATGCTCTCCTCACTCAGCAGTGATAAGATTAGCCTTGGACACTTTGCATTTTAAACAGCCCTTAAATATCTCAGATTTTTCTGCCACACACTGCAAAGAAACACTTGGTAGCAACAGGAagtactttatattttttttcactaaagatAAAGTTTGATGCACACCTCAGTTTGCCCAGAAGGGAGTAAGTATggttaattgttttttttttttttcttcttttgttcaACCCAAGGGCTTTTTTTGCTGGTATTATGTGTTGTATTTTGAAAGCTTTGTATATCATGGCTTTCACCTGGGTTATATTGTGTGGATTGGGTGCTTGATTCCTCTTAATGTCTCCTGCTTCAGTAATAGGCCGCATGAATGAGTGTAAAAGTGTATTTTAAGTTACTTTCacacaactgcacacattgATAAATGTTTGCAACAATGTGCCTTTGTTCACATGGGAACTGAGGGTTTGcattataaagaaaagaaattatttaatataggGATTCAGTCTAATGTGATAGTATAAACCAGTTCTCTACAATGAggtttcaaaaatatttaaaataaaacagtaaattgGATTGATGTGTGAATGAAGTGAATGTTTTAGATAAATTTGAGAGTTATTGAACTGTAAACTAACAgttataaaagtattttaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU61262 lncRNA upstream 3150 23882027 ~ 23882326 (+) True G51825
TU61216 lncRNA upstream 44917 23768377 ~ 23840559 (+) True G51785
TU61189 lncRNA upstream 160824 23724451 ~ 23724652 (+) True G51772
TU61184 lncRNA upstream 165261 23720012 ~ 23720215 (+) True G51767
XR_003404512.2 lncRNA upstream 234349 23640352 ~ 23651127 (+) False LOC113544527
TU61283 lncRNA downstream 14118 24013518 ~ 24013718 (+) True G51840
XR_003404001.2 lncRNA downstream 55754 24055154 ~ 24057898 (+) False LOC113540163
TU61305 lncRNA downstream 55820 24055220 ~ 24057887 (+) False LOC113540163
TU61303 lncRNA downstream 55841 24055241 ~ 24057887 (+) False LOC113540163
TU61304 lncRNA downstream 55841 24055241 ~ 24057887 (+) False LOC113540163
XM_034303047.1 mRNA upstream 50625 23804937 ~ 23834851 (+) True slc29a3
XM_026939527.2 mRNA upstream 434485 23428017 ~ 23450991 (+) True si:dkey-78p8.1
XM_026935614.2 mRNA upstream 609160 23220121 ~ 23276316 (+) True meis1b
XM_026935610.2 mRNA upstream 609836 23220125 ~ 23275640 (+) False meis1b
XM_026941706.2 mRNA upstream 784342 23071308 ~ 23101134 (+) True spred2b
XM_034302049.1 mRNA downstream 134223 24133623 ~ 24136847 (+) True LOC117596572
XM_026939158.2 mRNA downstream 317303 24316703 ~ 24345368 (+) True ggps1
XM_026939154.2 mRNA downstream 350784 24350184 ~ 24402454 (+) False b3galnt2
XM_026939153.2 mRNA downstream 350788 24350188 ~ 24402454 (+) False b3galnt2
XM_034302678.1 mRNA downstream 351942 24351342 ~ 24402454 (+) False b3galnt2
TU61214 other upstream 79981 23793680 ~ 23805495 (+) False slc29a3
TU61166 other upstream 188182 23697032 ~ 23697294 (+) True G51749
TU60962 other upstream 429927 23454428 ~ 23455549 (+) True G51562
XR_003404579.1 other upstream 770437 23114185 ~ 23115039 (+) True LOC113545030
TU60615 other upstream 1098971 22784328 ~ 22786505 (+) True G51271
TU61306 other downstream 55841 24055241 ~ 24057887 (+) True LOC113540163
TU63018 other downstream 2986578 26985978 ~ 26992711 (+) True G53328
XR_003404257.2 other downstream 3198509 27197909 ~ 27207245 (+) False znf451
XR_004577886.1 other downstream 3198509 27197909 ~ 27206395 (+) False znf451
XR_003404258.2 other downstream 3198509 27197909 ~ 27206370 (+) True znf451

Expression Profile