RNA id: XM_026936546.2


Basic Information

Item Value
RNA id XM_026936546.2
length 5095
RNA type mRNA
GC content 0.47
exon number 26
gene id ccar1
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 18913582 ~ 18933062 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCTCCGTGCAGTACCAGCGGTAAGCGGCTACGCTAAACACACTATGGGGCATTTTGGGCAGTATTTGTTGTGCTTATGATAACACGCAACATTCTGGACGGCagacattattattttgtttgttaatttgTGAAGAATTCCTGTGGACTGAATGTGCAGTAATAGCCTCGAGCTAACTAGGCATGCTAATGAGTGGTGCTGAGTTAAAGAGCAGCTGAACAGAGAGCCCGGGGCTAACGCTAGCTCGCTGCAGGGTTGCTGACTGGACATTTCTCACCACCGTGACATCATTTGCTGCTGGTGCATCAACACCGTAAGCCATCCTCCATGGCTCAGTTCGGGGGACAGAAGAACCCTCCATGGGCGGCCCAGTTTGCTGCAACTGCGGTGTCTCAGCCCGGACATTCTGCACAGTCCCTTGACTTGAACAGTTTGCACTCTTTAGGTGTTCAGCAGCCGTCTCTTTTAGGTGCCTCCCCCTCCATGTACTCCCAGCAGTCAGCCTTGGCTGCAGCGTCCCTCAACACGCAGTCCGCTGCCAATTACCAGATTTCCCAGCAGACTGCGGCTCTCCAGCAGCAGGCAGCTGCAGCTGCCGCAGCTGCACTGCAACAGtCTCAGATCAATTCAGCCCTGCAGCAGTACCAGCAGCaccagcagcaacagcagcagcagcagcagccaccTCAAGCTCCCCCACCACAGCCACCTCCTCAACAGACACTCTACAATGTCCCACATCAGCTTCCACAGCCTCAGCCTGCTCTGCTTTCACAGCCCCCTGTTGCTTTGCCAACCAGTATGAGTTTGTCGAACCCACAGCAGACGGCACAGATCACAGTTTCGTACCCGACCCCCCGCTCCAGCCATCAGCAGCAGACTCAGCCACAAAAACAGCGTGTCTTCACTGGGGTTGTCAACAAGCTTCATGATACATTCGGGTTTGTGGATGAGGATGTGTTCTTCCAGCTAAGTGCTGTAAAGGGAAAAACACCCCAAGTGGGTGACCGTGTTCTGGTGGAGGCCGTCTATAATCCCAACATGCCCTTCAAATGGAATGCCCAGCGCATACAGACTTTACCTCAGTTACCCAACCAAACGCACCAGGCGGCCCAGCCCTTACCTCAAGTTTCCCCACAGCTGTCCAGCTTTTACTCTGACGCAGGAGTACAACGCtacactgacatacacacagcGGTGGATTCAAGACCAAATAGCCAGCCTCCTGCTCCCAACATGATGAAGCCAGGCCCTTCCATGATTCAGTCTCTACCTCCACCCACCACTTTCAGTGTGCCGGCACAGGGTCCCCCTCCCTCACTGCTTCAGGCTCAGCTTTCAGCAGCCTCTCTTGCTCCGTTGCTCCAGAATCCTCCTCAGCCTCTCCTTCCTCAGCCACCTCCAAAAGATTCAGTCTTTTCGGGGGGGTTACTTCAGCCTCCGGTACGGATGATGCCCCAGCCCCAGCCCGTGAGACGCATAGACCCCTCTCCTCGCTTTCCCAGCCGCAGTGATCGACCAGAACTCATTCTAAGGAAAGAAGACCGAAGtcgggacagagacagagagcggAGGCGATCCAGAGAGCGTTCGCCAACACGCAAGCGTTCAAGGGACCGGTCACCTCGAAGAGATCGTTCTCCTAGACGTCCACGCAGAGTTGTACCTCGATATACTGTACAGTTCTCCAAGTTCTCCCTGGATGGATATAACTGTGACATGATGGAGCTTCGACGGAGGTATCAAAGTCTTTACATCCCAAGTGACTTCTTTGATGCTGTATTCACCTGGGTGGATGCCTTCTCCTTATCACGACCATTTACATTTGGAAACTACTGTAACTTCCATATCATGCATAAAGAAGTGGACTCTTTAGTGAAGAACACAGCTGTACTGGACCCTCCTGATGCCAATCATACCTACAGTGCTAAGGTGATGCTGCTTGCAAACCCCAGTCTCGACGAACTGTATCACAAGTCTTGTGCCTTGGCTGATGATCCGCAAGAGCTGAGGGACTCTTTCCAGCACCCAGCCCGCCTCATTAAGTTCTTGGTTGGGATGAGGGGCAAAGATGAGGCCATGGCAATTGGTGGCCACTGGTCTCCATCCCTGGATGGAGCCGACCCAGAGAACGATGCCTCAGTCCTTATAAAAACAGCAATACGTTGTTGTAAGGCTCTGACAGGCATTGATCTGAGTTTGTGTACCCAGTGGTATCGTTTTGCAGAGATTCGCTATCACCGCCCTGAGGAGACTCACAAAGGGCGGACAGTTCCCGCACATGTGGAGACAGTGGTTTTATTTCTCCCGGATGTTTGGCATTGTCTTCCTACCCGCTCAGAGTGGGAAGGACTGTCCCGCGGACTCAAGGAGCAGCTGGCAGAGAAACTCTTGGCTGAACGGAAGGAGGCGGATGGAGAACAGgaggaagaggagaaagacGAAGACGATTCAAAAGAGGTTACTACCCCCACTCACTGGTCTAAACTCGATCCGAAATCTATGAAGGTGAATGATCTGCGTAAGGAGCTAGAGAACCGATCTCTGAGCTCCAAAGGACTGAAGTCCCAGTTGATAGCTCGGCTCACTAAGCAACTGAAGGTGGAGGAGCAAGTGGAGGAATCTAAAGAGCCTGAGAAGGCTGAACCTACCagtgtggaggaggaggagcccTGCAGAACCGAGGAAGATCGTGAGGAAGAGGAACGTAAGCGACAAGAGGAGTTGGAGCGTCAGCGTAGGGAAAGGCGTTACGTTCTCCCAGATGAACCCACAATCATTGTTCACCCCAACTGGGCAGCCAAGAACGGCAAATTTGACTGCAGCATCATGTCTCTGAGTGTGCTATTGGACTACAGGCTGGAGGACAATAAAGAGCACTCCTTTGAGGTCTCATTGTTTGCTGAACTTTTCAATGAAATGCTTCAACGAGATTTTGGCTACAGGATCTACAGAGCCCTTACTGCTCTCCCGAGTAAggatgagaaaaaagaaaagaaagataagGCAAGGAAAGatgcagagagaaaagaggtgGACAGGAGGGATATAAAGAAGGATAAAGAGGATGAGAATGCTGAGCCAGTCTCAAAAAGACCAAGAGAGGAGGAAGATAAGAAGAGGgatgaAGACAAGGAGAGGTCTTTGAAGAAAGAAGAATCCAAAGATGACGATGATAATGAAGATGAAAGCAGCAATAACAATGCTGACGAATATGATCCCATGGAGGCTGAGGACGCTGATGAATATGACGATGAAGataaagatgatgatgattccAGCGGGAGGGATAGGAGGGATGACCGCCGCGATGATAGAAAATCAAGAGATAGATCATCTAAAGATAAAGATGACAAAAAGAAGCAGATGATCACACATGACAAAGATCTTCTGATGGCATTTGTGTACTTTGACCAAAGCCACTGTGGCTACCTACTGGAGAAGGACCTGGAGGAAATTATGTACACATTGGGCTTGCATCTCTCCAGAGCTCAgGTAAAGAAACTGTTGAGTAAGCCATTAGTGAAGGAGTGCTGCTACTACCGAAAGTTAACGGACCGAGCCAAAGATGAGCCCAACCCAGTCGGGACAGCTGATTCTCAACTGGAGAACCCCTTGGGTAATCGACCTCTGCTGCCCAGTCAGAAGACAAAGCGTGAGACAGAGGACAGTGACTCAGGCAGCCTTATCGTTTATAATGGCGCTATGGTAGATGTGGGCAGCATGCTACAGAAACTGGACAAGAGTGAGAAAGCCAGGGAGGAGATTGAACAGAAACTCATGCAGCAGGACACTAAAATGGACGAAGATGCAAAACACATATCAGAAATGGAGTCGACTAACCGCAGTCTGATGAGAGAACTGGAGCAGGTGAAATCCagcctgagagagacagaaaagaaccTCAGAGCATGTGAACAGCAGAAGAGCAGCTACCAGCAGCAGCTTCGCAGCACTCTGACGAGCCTCAGCACAGTAATGAAGGACCTGCAGAGTGTCTTACCTAAGATGATCATCCTGAAGATGGTGACCAGAAAACTCAAACTAATGGCTCAGATGACTGAActacctttgtgtgtgtgtctgtgaccTGTTTAAACCTGTAAATAAGCACTAAGCTCATTTAATTAGAagttgttggggttttttttttttgtacaaattttaACGACTGAGGAGGTCATGCTAATTTAGTTTTctccacatcattttttttcagactttctACATAAATTATGTTCATTAATTTCATTCAGTAAAAGGCTTATCCAGTTCATTTGTGATATTTAATTCTTGTTCTAATATGATGTGTCATTGATTTCAGAGTTctagcaaaatgtttttttttttttttttccagttgccagtaatcttttcttttctctcaatGTTCTATCAATATGCTTGGAGGTATGAGTGGTTTATCTAAGTTTAATTAGCAataatgatgttatttatgtgtACAAAGTATGTAGAACAGAAAGGGTTTATTTCACATTAGAACCTGGGTAGAATTGTGTATTGGATGCCGGGCCAGGCTCAGGGTAGATATCTTTTTGTTGTACTGATGccacagatcacattttttgtgTAATATCTTTGCCAACACTTTGCTAACTTGCTGCTATCCTGTTTGTTGGTACGCATATATGCTGACGCATGCATATTTGCTTAATTCTGTATGTTCTGTGATCATCTGGTATCCTATGCGGATGGCACTATGCatgtgtcatattttttattttattttattttttttttgtcatttcaagGGTTAATTCTGGCGCAAAAGCTCAGCTATGTTTTTGATATAGTGGTTATTGTAATAAACTTGACTCTggttctgtacacttcagaagaATCCTAAGTACTTTGCAGAATATTCCAGAATTGtaatttgtgtgaatgtgaaaaatgttttccCATATTATTTTTCTCTGGTCAGTCGTCACAATGGGTGGGTTATAGGGAACGGAAAAGAGCCAAACTTAGTAACAATGAGCCCAAAGCAACCAAGTGCATATTATTTTTCTAATCCAGATGTACTATCATGGTTGttctgtgtaaaaataaattggttcattttaacatttta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU57821 lncRNA upstream 1508 18911486 ~ 18912177 (+) False zgc:110319
TU57584 lncRNA upstream 202390 18708032 ~ 18711295 (+) False G48690
TU57585 lncRNA upstream 203314 18708032 ~ 18710371 (+) True G48690
TU57371 lncRNA upstream 211779 18677230 ~ 18701906 (+) True G48482
TU57833 lncRNA downstream 34344 18967406 ~ 18967777 (+) True G48908
TU57836 lncRNA downstream 37736 18970798 ~ 18974710 (+) True G48911
XR_004577820.1 lncRNA downstream 81129 19014191 ~ 19015574 (+) True LOC117596836
TU57789 lncRNA downstream 93945 19027007 ~ 19036636 (+) False selenou1a
TU57791 lncRNA downstream 93945 19027007 ~ 19036636 (+) False selenou1a
XM_026937020.2 mRNA upstream 1490 18902438 ~ 18912195 (+) True zgc:110319
XM_026937057.2 mRNA upstream 18287 18891221 ~ 18895398 (+) True eif4e1c
XM_026935928.2 mRNA upstream 30254 18852702 ~ 18883431 (+) False tet1
XM_026943192.2 mRNA downstream 6703 18939765 ~ 18956226 (+) True stox1
XM_026938324.2 mRNA downstream 25322 18958384 ~ 18963875 (+) True si:ch211-198a12.6
XM_026938333.2 mRNA downstream 25322 18958384 ~ 18963875 (+) False si:ch211-198a12.6
XM_034302736.1 mRNA downstream 25323 18958385 ~ 18963875 (+) False si:ch211-198a12.6
XM_026938315.2 mRNA downstream 25323 18958385 ~ 18963875 (+) False si:ch211-198a12.6
TU55884 other upstream 2677037 16234535 ~ 16236648 (+) False lrrc18a
XR_003404341.2 other upstream 2840618 16070714 ~ 16073067 (+) True cxcl18a.1
TU55689 other upstream 2841765 16070759 ~ 16071920 (+) False cxcl18a.1
TU55629 other upstream 3116481 15793428 ~ 15797204 (+) False eif4ebp2
XR_004577898.1 other upstream 4546239 14361367 ~ 14367446 (+) False cgas
XR_003403773.2 other downstream 408288 19341350 ~ 19356098 (+) True sfxn5a
XR_004577568.1 other downstream 408288 19341350 ~ 19356098 (+) False sfxn5a
XR_004577569.1 other downstream 408288 19341350 ~ 19356098 (+) False sfxn5a
XR_003403774.2 other downstream 408288 19341350 ~ 19356098 (+) False sfxn5a
XR_003403775.2 other downstream 408288 19341350 ~ 19356098 (+) False sfxn5a

Expression Profile