RNA id: XM_026936595.2


Basic Information

Item Value
RNA id XM_026936595.2
length 4448
RNA type mRNA
GC content 0.44
exon number 9
gene id mmrn2a
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 10016483 ~ 10035390 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AACAGCTTTAAAGCAACTATTGCTCTCACTGAGGAGTCAGAGGCTGGGAAGATAGcacacatgtgtatgtgtgtttagtgGAGGAAGCAAGCAGACATGGTCAAAGTGTTTCTGTTACTGCAGGGCCTGCTGCTGGCAGCACGGTCTGATGTTTGGCCCAGAGCTCAAGAGCTGAAAGACGGAGAGGAGGAGCAATTAAAGCACATACCACACCAACACCAAGGTGATTGGGATCATGGAGACCAATATGGACATTTTGGAGCAGGTCATCACAGTGCTGGAGCACATAAAGAAAGCCCTGATGTCTCTGAAACTGTACATTACCCACTGGAGCATGGGCATGTTAACCCCAATCACGGGCATCCATCTGAGGATCTATCTGTGGATTCAGAAAATGGTTCAGCAGAGACCTACAGCAATAACAATCCAACACGCATGGGAAACTGGTGTGCATTTGTGCAAAAGCGTGTAGTCACCATGGCAGTGTCCTGCGGTAGTGAGAAATACATTATCAAGTCCCAGAGTCCCTGCCCTAATGGGACGCCAGACTGCCATCTGGTCATGTACAAGCTGTCTACTCGGCCGGTGTACAGAGAGAAGCAGAAGATCTTCACAGCACTCTTGTGGAGATGTTGCCCTGGTCATGGTGGAGAGAACTGCGAGGATATTGTGGAAAACGGCCATGTCTCTGAAATCTCCAATACTGACATCAGGCTTCATCCAGGAGGTCCAGAGCTCAACGATACAGGAACTGAGATGCTAACCCACCACCAAAACCAGGAGCAGAATGACCATCAAGAGTCCAGGCGTTCGCTATATGAGTCCCTGAGGTCTGAGGAGAACCAAACGGAAGAAGAGCACAGCTATGACTACACTCCAAGCCAACACACTGGCCATAAGCCTCATTATGAGAGAGGCGCGCCCTACGCTGTGGATGATGGACACAGAGATCCTCCACCAGAGACACATTATGCAAATCCCGGACTTGTACCCATCCATTATTTAAAGGATGTCATGATGTCTCATCTACAGCCCATATTTGACAGCTTCAACCTGACACTAGCACGCCTGTCTGAGGAGGTTCAGGATTTACAGAGGGACATGACCAAGCTGCAACTTCAACAAATGCTACAGGGAGAGTCCAAACCGGCAGTAGATGGAATAGGTGAGGAGTCGGAGCAGGAGCAGGACGTGGCAATGACTGATAGCTTTCAGCAGCTGGAGGAACTGAATATGCAACTTGGCCTTCAGCGTGATGAGATGGAAGAGAAGCTACATGCACAGCAGGCCATGTTTTACTACAACTTGACCAGTCTGAAGACTGACATGGATGTCCGAATTAAACGCCACCAGAAGACGCTACAGATGAGTCTCCATTCCCTAAATTCCTCACTATCAGAGGCAAGAGAGAAACAAGAGCAGTTAGAGGAGGAGATCCAGAGAGTTTTGACACTTGCAAGTCAGACACCAAGTCCTGGTAGACAGCCTCAAGATGACACAGCAGTCTGGGAAGCCATTACCCGTCTGGACAATAAGGTGGTCAATAACACTATACAGTTCAGTGCCCTAAACAAACACCAAGTCCAAGTGTCAGAAAAAATAGAACACTTGCAAAAGGGCTGGAAGACCTTAGAGGAGCGTGTAATCCAGAATGACCGCAAGAATGAGGACAGATACATTGAGGCTTTCCTAGAAGTGGATGCGGCAAAGGAGGCAGTTGGAAAATATGCTGATGACCTGTCAAAAAATGTCTCCATTCTCCAAAGCACAGTCCAGGACCTGGAGATAGATACGGACTATTTGTACACACAGTTCTATAAGAACATGAGCTCCGGTAGCAGAAATTGTGACTGTACTGGCCTTAGCACAACTGTGGCGCAGTTGAAACAGGCAGTATCTAATATAACAGTGATTGCAAATGAAAACAGGCTCGCTCTAGACAGTGCAGCAGAAGAGAGGTTAAACATTTGGGAAAATGATGGATGGGGCCCACCAGTGGAAGAGATAAAATTAGGCTTACACACTGTGCAGAACTCACTGGCGCTTGAGCAAGAGAAGCGCAGAACACTGCAACAAAACTTAACCATACTCCAGACCTCACTTTCAGGCAGTCAAAAAGATGTTGAAGCTCTACAGCAAAAGGACAGTCAGAAATCTGGCGAGATAAAACGCCTGTTCAACTCTTTCAGCTCTCTGTTGAAAGATGCCATACGTCATACTGATGTACTGGAAATCCTCCTTGGTGAAGAGGTTTTGGAGTTTATGGACTGGTCCCCACAAGACCAGAAAACCTACTCCATCCCTGTGCTGAAGATGCTGATCAGCGACCTGCAGGAACAGATTAACGGACACAGCCGAAGCCTGGCCTCCATGCTTAACTCTGAAGATCCCACTGCAGATGAACCAATGGAGCTGGCAGAGGATCTCAAAAGGAGACAAAAGGAACAGAAATTTGACCATTTCTCAGAGGACTCTAGAGCTTATAAAGACTTCTTTGCTTTGGAAAAAACAGTGGAACAGCTTCAAGCACGTGTCGTCAAACTTGGAGAACAGCAATGTCCATCCTGCTGCGACTGTACCAAAGGTGCCGCTTCCAGAGATGTAGAGGGAAAACTGCAAGCCGAGTTGACACATGTGCGCAAGAGCCTTGACGATCATCTCACGATTTTCAACAGCGTTTTCAGTAATACTGGAGGTCTAACAGAGTCTGAAGTGAAAGTAGATTTGGAAAAATTGTCTgcattaatgaagaaaaaagaatccAAACTTCAAAGAAAGAAGCATAAGGAGAGAGCAGATACAAGAGGTGCACAGCGCAGCAAGCGGGATACATCACTTGAAACGGCAGTGCACAGTCAGTTTCCTGAGGACCCACTCATGTTTGTGGCCAGCAGCAGAGACGGTGTTAACACACCTGGTACAGTCGTGTTTGAAACCATGTCCCTAAACCATGGGCAAATGTACTCACCTGAAACAGGCACATTCCGAGCACCTACTGCAGGAGTTTACCTGTTTGTGTTGACGCTGGACTTTGGGCCTGGGCCATCTTTAGCCCAGctgaagagaggagaggaagtgGCGGCATCGGTGCATCAGAGCATGAGGAAGCCATTAGGACCTGCTACTCGTGTCTGCCTCCTACAGCTGCAACAGGGTGAAGAGGTCCATCTAGAACTAGTGCAGGGAACACTGGAGCATGGGAAGCCACAGGAGAACACCTTCGCTGGACTGCTGCTCCTACAGACCACATGAGCACACGTTCACATCTGAAAgcgcaaaaacacacacactgggatgaagaaatgaacaaacttcaatatcttgattattttcaataCAGCGCTTTTTCAATTTCTCCTGATCACTGATTTGTCACAAGAAGCCTCTTGTACATGCTCATTGGTATAGATGTTTGCAGCTTGTGGCAGTTTTATAAGCATCCGTATTGTTTCAGATTTTCAAATTTGGTCTATTTGAAAATCAATACTGACTGAGAGACTTCTTTCCAGGcttagactgtgtgtgtttatagataTAACGTACATATGATGGCTACTATTACAGGTAGGTTGCCCCAACTACTTCAGTGAAAAAACTTAccatatatctgtatatttctGCTGCACCTTAAAACACAGTTGCCAAAGTTAGGTCATGTCATTAATGCATGCTACTCACACTCTCGTCTCATACACATTTGAAATGACCCACAAGCACTCAGACTCATATAGtaaatatttacttaaaatgaatACATTGGACAAGtatcatacatacagtatttgtatTTTCTTGGCAAACTCATAAGGCACCCATTCAACCAGAAGTTATATTAAAAAGGTGTGTAATAATTACATACCAATAGTTACCTTTTATCAGGGCAGGGCAGGGCACATTTAAATATCTACATCATGTTAGAGATGCTAGTTCATTTgttaaagtgtttcattttataaGTTTAACTGGGAGAAAcaggagtaaaaaaaagaagtgtcaTGAATCACAGCATGATTGAGCAAGCTGCAAGGATAGCAGTGAGAAATGAGAATGAACAACAGACACGTAGTTgccaatgtttaaaaaaaaaaaaaaaacttttgcttTTCCAAAACATTCTCTTCTGGCCAAAGAGTGCAACCATTTCCTGTgctattttattctattgtaCACTGAACTGAACCTTGAGTTAACCCCATCatcttttacatatttatatttttaaagcaaatttattttttgaagagcattttatcaaactttttcaaactttatcatttattttcctgtaattttACCTTTGCAAAACGTGAAAACTTTGATAAAGCATAATATAAGTCTGGCACTAAAATGAGGACTGTTGGTTTACACTTCCTGTACGTATAGACCCATATCATGGTCTTTCACAACTTGTTTCACTGGCACGGAAAGCAATAAAGGTAACGCAAGGC

Function

GO: NA

KEGG:

id description
K24247 MMRN; multimerin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU51561 lncRNA upstream 144664 9871546 ~ 9871819 (+) True G43615
TU51332 lncRNA upstream 344743 9668611 ~ 9671740 (+) True G43422
TU51269 lncRNA upstream 489324 9526861 ~ 9527159 (+) True G43360
TU51246 lncRNA upstream 521273 9494977 ~ 9495210 (+) True G43337
TU51239 lncRNA upstream 527524 9488759 ~ 9488959 (+) True G43330
TU51592 lncRNA downstream 24136 10059526 ~ 10077649 (+) False G43646
TU51598 lncRNA downstream 35777 10071167 ~ 10072098 (+) True G43651
TU51593 lncRNA downstream 38792 10074182 ~ 10077649 (+) True G43646
TU51610 lncRNA downstream 58345 10093735 ~ 10101531 (+) True G43663
XR_004577885.1 lncRNA downstream 126109 10161499 ~ 10163956 (+) True LOC117596896
XM_026933386.2 mRNA upstream 22093 9976131 ~ 9994390 (+) True glud1a
XM_034303032.1 mRNA upstream 72495 9909353 ~ 9943988 (+) True psda
XM_034303034.1 mRNA upstream 110090 9904065 ~ 9906393 (+) True LOC117596887
XM_026934220.2 mRNA upstream 119689 9876707 ~ 9896794 (+) False rufy2
XM_026933156.2 mRNA downstream 492987 10528377 ~ 10540040 (+) True si:dkey-191g9.5
XM_026932587.2 mRNA downstream 507220 10542610 ~ 10550191 (+) True si:dkey-191g9.7
XM_026937942.1 mRNA downstream 520190 10555580 ~ 10555993 (+) False sprn
XM_034302755.1 mRNA downstream 537762 10573152 ~ 10588115 (+) True dna2
XM_026936631.2 mRNA downstream 537762 10573152 ~ 10588115 (+) False dna2
trnak-cuu other upstream 1546787 8469624 ~ 8469696 (+) False trnak-cuu
TU50445 other upstream 1550171 8465747 ~ 8466312 (+) True G42685
XR_003404394.2 other upstream 2350450 7649198 ~ 7666033 (+) False naa15b
TU49753 other upstream 2795460 7203950 ~ 7221023 (+) True G42075
TU48562 other upstream 4674733 5318534 ~ 5341750 (+) True G41047
TU52056 other downstream 516869 10552259 ~ 10558295 (+) True sprn
XR_004577889.1 other downstream 559184 10594574 ~ 10608704 (+) False LOC113543929
XR_004577793.1 other downstream 1064203 11099593 ~ 11171114 (+) False dntt
trnag-ccc other downstream 1555945 11591335 ~ 11591405 (+) True trnag-ccc
XR_003404598.2 other downstream 1647474 11682864 ~ 11726772 (+) False LOC113545306

Expression Profile