RNA id: XM_026936642.2


Basic Information

Item Value
RNA id XM_026936642.2
length 5175
RNA type mRNA
GC content 0.43
exon number 14
gene id letm1
representative False

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 19996869 ~ 20032845 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GAACACTCCCCCTGCCGGCCTGGTGTACAGGAAGCCCCGCGAGCGCGTCAAGGCCATTCAGCAGCGAGCGTTTTGCAAGATCATCGCTTGAATTACTGCTGCTAGACTTTTACCAAGGGCATGGGACGAGAATTTGGGACTTTAGCGGATTAAATACTTTGTAAACCTTTGAAAAGCCACACAGCACTACCGGATCGACGTCTGTAACCGTCGGATTAACGacaaacagttttttccccaccGACTGGGATTAGGATGGCGTTAATTTTATTCTCGAGATCTCGGACTCCGTTGATGAAATCATCCAGATCATTAAAGAACGAGTTCAGGAAAGgAAAGCTGAATGAAGTAGACTGCTTCAGTTGTACTGCACTACGCCTGGCTACAAACAGTCCCGAGGTTTTCAGAGGCAGTTTGGCAGCTCAGACATTCTCTCTCAGGCTGTATCCTGACCAAGCATGTGTGCGTCAGTGTTCACTGACCAGTTCACCTCGCCTTTACTGTTCCGTCCTGATACCCAACTCTACTACAGTAGGCCACACCCATGCTGTCTCTAACTGGACAGTTGCACAGTGGACCACGCCAGTACGGTGGGTTCACACCTCAAGCTGTCTTCATGATGACTCCAAAGTGGAGCGCTCGCTGCGTTCACTAAAAGACCGAAATAAAAAGCTAGAGGAGGGAGGCCCTATCTACAGCCCTACTGTGGACGTGGAGCCAGTGCGGCGTACGCTAGGGCAACGTGTGATTGATGAGGTGAAGCACTATTACCATGGGTTCCGACTTCTGTGGATTGATACGGCCATCACTGGACGCATGCTGTGGAGAGTGCTGAATGGGCAAACTCTGTCAcgaagagagaggagacagttCCTGAGGACATGTGCAGACCTATTCCGACTCCTGCCTTTTCTGGTTTTTATCATTGTTCCGTTTATGGAGTTCCTGCTTCCTGTTGCTCTGAAGCTTTTCCCCAACATGCTGCCATCCACTTTTGAGACAAAGTCCAAGAAGGAAGAGAGGTTGAAGAAGGAGCTAAGAGTGAAGCTGGAGATGGCTAAGTTCTTACAGGACACAGTGGAGGAGATTGCACTGAGAAACAAAGCAGACAAAGGCAACGTGACTGAGGAGTTTTCTACCTTCTTCCAGAAGATCCGGGACTCGGGTGAAAGGCCTAGCAATGACCAGATCATCCGATTCTCCAAACTGTTTGAGGATGAGCTGACTCTAGACAACCTGACACGGCCGCAGCTGGTAGCTCTCTGCAAGCTACTGGAGCTACAGCCCATCGGCACCAATAACTTCCTCCGCTTCCAGCTCATCATGAAGCTCCGCTCTATCCGTGCTGATGACAAGCTAATAGCAGAGGAAGGAGTGGAGAGCCTTAATGCGAATGAGCTGCAAGCAGCATGCAGGGTTCGAGGCATGAGAGCCTTGGGAGTGACGGAGGACAGGCTTAGAGATCAACTcaaacagtggcTGGAGCTGCATTTGAACCAGCAGATCCCCACTTCTCTGCTACTGCTTTCAAGGGCTATGTTCCTTCCTGACACTCTGTCTCCTGCAGACCAGCTTAAAACCACACTGCAGACCTTGCCTGAGATAGTGGCTAAAGAGGCACAGGTGAAAGTTGCAGAGCTTGACTTCTCTAAGGTGGATAACAAGACTAAACTGGAGACCATGCTGCAGGAAGAGGCAGCTATCCGCcaggagaacagagagagggagctgGAGAGGCTAGCCGAGACTGCAGAGAAAGCCAAAGAACAGAAGGAGGATGTGGAGGTTGGCATGCGGGTAGATGCTGATCTTGCTATGCCCAGTGTAGACGTGGCTATTCACGCTGAAACATTACGAGACACAGCACCAGTGCTGGATGGTATTAAGGGAGAGGAGATCACTAAGGAGGAGATTGACATGTTGAGTGATGCCTGCACCAAACTGAAGGAACAGAAAAAACTCCTGACAAAAGAgaaggaggagctggaggagctgAAAGATGATGTGCAGGAATACAATGAGGATCTGGAGGAGATAAAGAAAGAGCTTTCTAAAACTGGGCAGGAGAAAGAGGTGGAAGAGTCTAAAGCCAGTAAACATCTGTCACGCCGGGTGAACCGCATGATCAGCCGCATGGATAAGATCATAAACGAGTTAGAGAAAGACAAGCTGGTgctggatggacagatggacagtggAACCACACCACCAGTTGGGGAGAACCTGATTAGCATCAGTGAGCTCATTGCTGTCATGAGGCAGATCCAGAGCATTCCAGAGCACAAGCTGCTCAGCATCGCCGACGCGCTGGATGAAAACAAGGATGGCAAGATAGACATTGACGATGTTATCAAGgTGGTGGAGCTGATTGATAAGGAGGATGTAGACATCTCCACTGCGCAAGTGGCGGAGATCATGTTGATGCTGCAGAAAGAGGAGAAGCTGGTGGAAAAGGAAAAAGCTAAGGAGAAGGCTGAAAAGGAGCAGGCAGCTAAAGTTCAGTAAAACTAAGTTCATCGTGGCAAGCTAGCATGGAGCAggaaaggacagaggagccACTGGTGCTGTAGCCACTGGTTTCATACTTGAAAAATAagagaaattaaattatttgttgAAAAATCCCAACATTCATTTCACCATCTAACCATCAGCTGGCAGTGATGTCATTTCATGTGAGCTGactcattatttttattttgcacaattgCACCATCATGGTTGTCATCATTCCACTGCCACTGCTGCCATTcggattcatttattttgtgttattttatttaaaccagACCCTTCTGAGTTGATTTAATTAGCAGACGATGCTGAATGTAGCTCAGATGGCCTGTGAGTGTGCTATTGTATTGTATGTCCAGAAACCAAAGTAAATTTGAAACGGTACTAAAGAACTCAAGGTCAATATGCAAATACTATGGACTGATCAAGAGGTCAGCTCTTGCAGTGAGCAGAGTCTCAGCTATggaattttacaattttttttttttggcaattaCTCTGTTGTGGCCTTGAGTGAACAAACATTCACCTAAtgacagtgatttaaaaaaaattacctttaTTGGTTAAGTATTACCCAGCTGAAATTCCTTCCTTTAGTTAACATATTAACAGTGTTTCCTTTCACCTGTTGATGAAACCTGGAGTTTTGTGGACGTGTATATTAGCAGTTTAGTTAACCTTGGAACAAATGCTAGCTGTAGACTCCTAATTCAATAGACTGGAGTTCTTTATGGAACTGTAGAGGATAGATTGTGAGAATTGTGctttgagtgtgtgagtgtgtgagtgtgtgagtgtgtgagtgtgtgagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgcgtgagaAGGGGGAGAGCGAGAGAAGATGGAGTGGGCTCTTTGCAGTGCAGACAAGTTTGGTGTATCTAGGCCTCGGCTCAGACCCAGTATGGTGAGGCCAGTCTGGGTACAGTCGCTTCAAGGACTGGGTAAACACTCGCACCATACATGGAGAGGGTAGCTagcagatacagacacacacattgtatTATGTCAGCATAACATAGTTGCACAGGGCACAGCAGACAGTGAATACATCACTCCCACTCCTAAACATGTcatagagagagaacagagtgtCTGACCTGAAAGCACTGACTCTGTGTTGCATCAGAGAGACAGTTGGAGCTCTGTTTTGGAGTCAGGGTGCCTTTTTCGCTTTGCGTCTATAAGCTTCAGCCAGGCAGCAACCAAGGGTCAGAGGTCAGCCTTTACCACAGTAACCACCTGTATTTATGCAGCTTGTGTATCTGCATTTGGGCCTTAAACCACATAaatttattgcacattaaaatctcattctgatgtttaaaggGAGCAAGAAATACTGATTTACAATTGCACTATCTgtatttaaagcttttttttttattattgttttgagGTTGTGATTCAGACTCAGGAATATTTGTGTAATGGGATGCAGGTTAAGAGAGAAGTGGAATGGTGGGTAGTGTAACTGGAAGAGATGGAGCATCTTTTGTCAAGTGGCAGGAAACTATATTTGGGTGAATGACCCAGATTTTGAGGAGAGAGTTATTATGGTATTTCTCTACCCTAAAGGTGCACTACTGTCCGTCTGCTATAATATGCAGTCACGTGGTCTGACCAAAAGGTTTTTCAAAAGATAGTTATTGTTGACCTTAAAATTGTGCAAATTCAACAGTAGTAAGCTGACGGAAAAGGCAGGGTGAAACTGTCCAGGAAGTAACCACTGTATACTTCATCCAAAGTTTGTACTTAATTTAAAACCAAGTAGAgtttatttaaaagaagaatCCAGAGCAATAgctatattattattgaaaGATTCTAAGTTCATTTTTGTTGTCTGCTGGTTAGGCTAATCCCAAACAAGGGTACTTGTTAAATCTCTCTGTTGGCTCTTTAAGAAGATTAGctagtgtagtattgtatacAGAAATATGGCCCTACCATGAGGAGAGGTGtccaaaagtaacaaaaaaaggatatagtgtttaaaaaagttatttgCCATGCCTAATTTGCTGTGCTTTAAAAATTCATACAATTTATTGTTAGCCAAAAACTGATTACGTAAAAAAGAGGAACCTGTTAAAGCAAAATCTTAAATTGAAAATCAACTCCTAAATCCATCTGTTCAAATGTAATTGCAAATGTCACAGTACCTGTTGTTAAAAATATGTATGCAAATTGTTGAACCCTAGTAGTTATTGTATGTCCCTGTATGTAATAACTGTACAGGTGTACAGTGGATTGGCTTTTAGTGATTAAATtcaatgaatttattttcatattacagAGTTTACCAAATATTTGAAAGGTGTGTAGCTCGATGATCTAtatagttttttattatttaaattaaattaaatttaaatttattaattgaaGCACAAAATAAACTTGTTGATGAAAGGTGAGATGAAGTTGTTGGTACTGTATTTTAAACCATCACAAAACTGAGTTTGGTTTTCTTttgagtttttattgtcataaaatatatatgaaaaaatatagcTTTTAATTTTGCCATGACTAATTCTCATGTAAGTATACATATTCTGAAACGGGTCTTTCCAGTTTGAATAAAAAGAGGTATTGTGATTCCTGGGAA

Function

GO:

id name namespace
GO:0005743 mitochondrial inner membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU58636 lncRNA downstream 26575 19895698 ~ 19970294 (-) False G49584
TU58643 lncRNA downstream 32558 19958444 ~ 19964311 (-) True G49584
TU58494 lncRNA downstream 245515 19747694 ~ 19751354 (-) False slc4a11
TU58495 lncRNA downstream 281449 19714165 ~ 19715420 (-) True G49484
TU58497 lncRNA downstream 281449 19714418 ~ 19715420 (-) False G49484
TU58688 lncRNA upstream 31411 20064256 ~ 20064511 (-) True G49605
TU58757 lncRNA upstream 148233 20181078 ~ 20184289 (-) True G49661
TU58755 lncRNA upstream 149208 20182053 ~ 20205593 (-) False metap1
TU58804 lncRNA upstream 182808 20215653 ~ 20216430 (-) True G49700
TU58849 lncRNA upstream 192121 20224966 ~ 20227579 (-) False atp10d
XM_026933670.2 mRNA downstream 152512 19841727 ~ 19844357 (-) True foxi2
XM_026943999.2 mRNA downstream 183003 19810135 ~ 19813866 (-) True cfd
XM_026939218.2 mRNA downstream 189246 19787744 ~ 19807623 (-) True c3h20orf194
XM_026943519.2 mRNA downstream 245534 19716600 ~ 19751335 (-) False slc4a11
XM_026937620.2 mRNA upstream 33857 20066702 ~ 20110665 (-) True kiaa1109
XM_026942983.2 mRNA upstream 78865 20111710 ~ 20120717 (-) True c9orf72
XM_026932676.2 mRNA upstream 94902 20127747 ~ 20150575 (-) False lingo2b
XM_026932657.2 mRNA upstream 94902 20127747 ~ 20150575 (-) True lingo2b
XM_026932667.2 mRNA upstream 94902 20127747 ~ 20149110 (-) False lingo2b
XR_004577815.1 other downstream 329208 19635838 ~ 19667661 (-) False atrn
TU58169 other downstream 677136 19316487 ~ 19319733 (-) True G49195
TU57664 other downstream 1383468 18330368 ~ 18613401 (-) True lrmda
TU56951 other downstream 2335485 17657581 ~ 17661384 (-) False col13a1
XR_004577787.1 other downstream 2422447 17562332 ~ 17574422 (-) False LOC113538666
TU58944 other upstream 325089 20357934 ~ 20369097 (-) False gng2
TU58943 other upstream 325143 20357988 ~ 20369097 (-) False gng2
TU58946 other upstream 325143 20357988 ~ 20369429 (-) False gng2
TU59887 other upstream 1578929 21611774 ~ 21614267 (-) False plekhh2
trnai-uau other upstream 1863339 21896184 ~ 21896277 (-) True trnai-uau

Expression Profile