RNA id: XM_034302742.1


Basic Information

Item Value
RNA id XM_034302742.1
length 1750
RNA type mRNA
GC content 0.52
exon number 10
gene id gabrb1
representative False

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 20262035 ~ 20279042 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGAAATGGCGCGAAAAGAGCTCTCGGAGCGGAGCGTCTTCGTGCAGCTCCAGCAATAACCAAAATATGCGCATTTAGTGAGGCGTGCGACACCTCGCACAGGAGTGACGGTTAGACGAGCGAGCAGGCGAACTGGTGGTTACTGCACTTCTGGGTTTCTCTGCATGCTCAAGCAGGTGCGGAGAAGCCGGAGCGCTTGGAGCACGCTGCGCCGCGCCAGGAACAATGGGATCTGACCGGCATACTGATACAGTGCTCGCGCTGCGTCTCCACGACCTGAGCACCGGCGGCCCCGGGAGCAGCTCTGGCgcactctctcctctcctctcctccgcTGCGCTCTTCTTTAGATAAGcttgcctttttcttttttttctttttttttttttttttttgcatatttatgctGGTCACGTCGTCGTGCGTGCATCGCTGCGTGCTTGAGATTGCGGGATCGCTTCGGAGCAAGTTGGACGGCGCGAGCGCCCTGTCTGTGCGCGATGTGGAGGGCTGGAGAGCGCTGGCGTCCGGCGCTGCTGTGTCTGCCCGTGCTGATGGCCGTGACACTCGGCCGCACTCCGATCTCACACAGGGTTAACGAGCCCAGCAACATGTCGTACGTCAAAGTCACCGTGGACAAACTGCTTAAAGGCTACGACATTCGGCTTAGGCCCGATTTTGGAGGTCCTCCGGTTGATGTCGGGATGAGTATTGACATCTCCAGTATCGACATGGTGTCTGAGGTGAACATGGACTACACCATCACCATGTATTTCCAGCAATCATGGCGTGATAAACGCCTGTCCTACACGGGGATTCCTCTGAACTTGACACTGGATAACCGAGTGGCTGATCAACTCTGGGTGCCTGACACTTACTTCATAAATGACAAGAAATCTTTCGTTCATGGTGTCACCGTCAAGAACCGCATGATTCGGCTGCATCCAGATGGAACTGTGCTCTATGGCCTCAGGATAACTACAACAGCAGCCTGTATGATGGACCTGCGGAGGTACCCCCTGGATGAACAGAACTGCACCCTGGAGATTGAGAGCTatgggTATACTACAGATGACATTGAGTTTTATTGGCAGGAGGGAAGTTCGGTGACTGGAGTAGACAACATTGAGTTGCCGCAGTTCTCCATCATTGACTATAAAACTTTATCTAAGAAGGTGGTGTTTGCAACAGGGTCATACCCTCGTCTGTCCCTGAGCTTTAAGCTGAAGAGAAACATTGGATATTTTATCCTGCAAACCTACATGCCCTCAAACTTGATCACCATCCTGTCCTGGGTCTCCTTCTGGATTAACTATGATGCTTCTGCAGCACGGGTAGCTCTagGAATCACTACTGTACTGACCATGACCACCATCAACACCCATCTACGAGAGACGCTACCCAAGATCCCCTATGTCCTCACCTACAGAAGAAAGTGGCAGAAAAAGCAGCTAAGAGCAACAACGAGAAGAGTAGACTTGAGAGCAACAAAATCCAGgtgGATGCCCATGGAAACATTCCCCTTACCAATCTTGACCTGCGCCTCACTGGGGCTGAGATGCTCGGTGGTCTTGGTGACCCTCGGAATACCATGTTCTCTTATGACAGTGCCAGCATCCAATACCGCAAGCCCCTGACAGGCTGTGACCTTTATGGCCGGCCGACTGCTTCCCTTGAACGGCCAATCAAGCACAAGAAGAGTCGCTTGAGGAAGCGGGCCTCTCAGCTTAAGGTGAAAATTCCAGACCTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU58849 lncRNA downstream 36370 20224966 ~ 20227579 (-) False atp10d
TU58804 lncRNA downstream 47519 20215653 ~ 20216430 (-) True G49700
TU58755 lncRNA downstream 58356 20182053 ~ 20205593 (-) False metap1
TU58757 lncRNA downstream 79660 20181078 ~ 20184289 (-) True G49661
TU58688 lncRNA downstream 199438 20064256 ~ 20064511 (-) True G49605
TU58921 lncRNA upstream 18076 20297118 ~ 20360451 (-) True G49797
XR_003403784.2 lncRNA upstream 70368 20349410 ~ 20351476 (-) True LOC113537651
TU58937 lncRNA upstream 184851 20463893 ~ 20464950 (-) True G49806
TU58979 lncRNA upstream 193435 20472477 ~ 20473295 (-) True G49836
TU58984 lncRNA upstream 198666 20477708 ~ 20478688 (-) True G49841
XM_026939078.2 mRNA downstream 7429 20224909 ~ 20256520 (-) False atp10d
XM_026939085.2 mRNA downstream 16343 20224909 ~ 20247606 (-) False atp10d
XM_026939092.2 mRNA downstream 17126 20224909 ~ 20246823 (-) True atp10d
XM_026934187.2 mRNA downstream 40268 20217216 ~ 20223681 (-) False dapp1
XM_026934180.2 mRNA downstream 40268 20217216 ~ 20223681 (-) True dapp1
XM_026936680.2 mRNA upstream 30802 20309844 ~ 20317169 (-) True gabrg1
XM_026932247.2 mRNA upstream 48863 20327905 ~ 20343502 (-) True gabra2a
XM_026941752.2 mRNA upstream 78928 20357970 ~ 20369445 (-) True gng2
XM_026941743.2 mRNA upstream 78928 20357970 ~ 20369112 (-) False gng2
XM_026940791.2 mRNA upstream 148829 20427871 ~ 20442232 (-) False trim8a
XR_004577815.1 other downstream 596288 19635838 ~ 19667661 (-) False atrn
TU58169 other downstream 944216 19316487 ~ 19319733 (-) True G49195
TU57664 other downstream 1650548 18330368 ~ 18613401 (-) True lrmda
TU56951 other downstream 2602565 17657581 ~ 17661384 (-) False col13a1
XR_004577787.1 other downstream 2689527 17562332 ~ 17574422 (-) False LOC113538666
TU58944 other upstream 78892 20357934 ~ 20369097 (-) False gng2
TU58943 other upstream 78946 20357988 ~ 20369097 (-) False gng2
TU58946 other upstream 78946 20357988 ~ 20369429 (-) False gng2
TU59887 other upstream 1332732 21611774 ~ 21614267 (-) False plekhh2
trnai-uau other upstream 1617142 21896184 ~ 21896277 (-) True trnai-uau

Expression Profile