RNA id: XM_026936770.2


Basic Information

Item Value
RNA id XM_026936770.2
length 1580
RNA type mRNA
GC content 0.45
exon number 6
gene id pdcd2
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 12759697 ~ 12762641 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTTATAAAAAGATTTACTGTAAGAGCTGAAAGTACCTTCACAGTTCGCATTTTTACTCAGAATCTGGTAGGGACCGCCAGAGCGCGGCCACTTTTCACCACGTCTTCTGTTTCACCCGAACTTTATTACGGACACGCACAAGAAAGCACGTCGTGCTGAAGAGTTAGCTGATGCTGTAGCTGAAACTTAGCACAGATGTCTGGAAACCGTACCGACTCAGAAGGAGAAACTGGGGTTGTGCTGGGCTTTTTAGAGGAGGCAGAGCCTTGGCAGCTCGCTAGCGCTCAGTTTCCCAGTAAAGTCGGCGGGAGGCCCGCGTGGCTGAGCCAGCTGAATTTACCAACCGTCGCCGAGCTCGTGTGTGAGAAATGCCAGCTTCCGACAGTGTTTCTCTTACAGGTTTATGCTCCTATTGTCGGACAAGAGCGGAGTTTTCACAGGACACTGTACGTATTCTGCTGCAAGACACCTGAGTGCTACACTGCAAACGACAACCGGTGCTTTAAAGtgtacaGAAGCCAGTTACCAAGGAAAAATGACTTCTATTCGTATGACCCTCCCCCCGATGAAGAGCCAGCTGCCAGCGCAGATGATGAGCATGTACTAGGATCAGGAGTGAAACTGTGCAGGCTATGTGGCTGCGCCGGACACAAAGCATGTTCACGCTGCCACACAGTCACATACTGCAGCAAAGAGCATCAGGCCATAGATTGGAAACAACGGCACAAGAAAGAATGCAGTAGTGAATCTTTCTCTGCTTCTGATGCTGaaaatttgtttctgtttcctgaGTGGGAGTTGGTAACAGAACCTGAAGAACTCCCAGTAAAGGATGACAAGCCAGCTGACTCAAATTCATTGGAGCAAGCAAATACTGAATCTTCagATTTGGAGGAGAGCGAGTTAGAGTCCATGGCCCTCCATGAATCACAggacagtaaaatgtttcagaaatttAAGGAGCGCATAGCTGCAGAGCCACATCAGgTATTGCGATATTGCAGAGAAGGATCTCCACTTTGGGTGTCATCTGAACATGTGCCCAGCAAAGAAGACGTTCCAAAATGCCCATGTGGCACCAACAGAATCTTTGAATTTCAGATCATGCCACAGTTGCTTAACCACCTAAAGGTGGACAGACCAGATGCCAGCATAGACTGGGGGACGCTGGCCATCTACACATGTGCTGCCAGCTGTGACCAAGGCAAAAACTATTCAGCCGAGTTCATCTGGAAACAAGACTTCTCAGAGGATCAGGGAGTTTAACTACtaaataatatagtatatactgGTTATGGCAACAGTGTTGTCATTTTTCAGAGTGCTGAAaagctaaaaaataaatctttacaccaccaccaccaaatTAAGCATCTCAATTAAGGGGTGCTGAAGTGTCTCACTAAATTAATGAACAGGTTGGTTAATGTCATGAGcagagaaatgttttatttaatgtgggATGAGCCAACTGAAAGAACAGTATACAAGACACAGTAAACGGATAAGAAATTTATTTGCTCGTTTCAAAGCAAATCACTaactgatgcaaaaaaaaaaaaaaaaaaaaatttacatta

Function

GO:

id name namespace
GO:0005737 cytoplasm cellular_component
GO:0046872 metal ion binding molecular_function

KEGG:

id description
K14801 TSR4; pre-rRNA-processing protein TSR4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004577841.1 lncRNA upstream 20471 12733432 ~ 12739226 (+) True LOC117596851
TU53325 lncRNA upstream 85074 12674408 ~ 12674623 (+) True G45170
TU53285 lncRNA upstream 111291 12647895 ~ 12648406 (+) True G45153
XR_004577794.1 lncRNA upstream 116393 12639317 ~ 12643304 (+) True LOC117596823
XR_003404309.2 lncRNA upstream 260678 12489514 ~ 12499019 (+) True LOC113542444
TU53595 lncRNA downstream 48278 12810919 ~ 12811250 (+) True G45351
TU53604 lncRNA downstream 58215 12820856 ~ 12821389 (+) True G45360
TU53620 lncRNA downstream 107362 12870003 ~ 12870223 (+) True G45376
TU53723 lncRNA downstream 197449 12960090 ~ 13031136 (+) True G45453
TU53729 lncRNA downstream 249305 13011946 ~ 13017600 (+) True G45459
XM_026945265.2 mRNA upstream 36456 12718905 ~ 12723241 (+) False ccsapb
XM_026945276.2 mRNA upstream 36456 12718907 ~ 12723241 (+) False ccsapb
XM_026945296.2 mRNA upstream 36456 12719057 ~ 12723241 (+) False ccsapb
XM_026945287.2 mRNA upstream 36456 12719058 ~ 12723241 (+) True ccsapb
XM_026938498.2 mRNA upstream 42375 12714631 ~ 12717322 (+) True acta1b
XM_034302928.1 mRNA downstream 6362 12769003 ~ 12774087 (+) True zgc:153169
XM_034302929.1 mRNA downstream 6976 12769617 ~ 12774087 (+) False zgc:153169
XM_034302930.1 mRNA downstream 6976 12769617 ~ 12774087 (+) False zgc:153169
XM_034302931.1 mRNA downstream 6976 12769617 ~ 12773210 (+) False zgc:153169
XM_026937247.2 mRNA downstream 11781 12774422 ~ 12782694 (+) True rab1ab
trnat-ugu other upstream 91811 12667814 ~ 12667886 (+) True trnat-ugu
TU53286 other upstream 116502 12639836 ~ 12643195 (+) False LOC117596823
trnay-gua other upstream 123291 12636320 ~ 12636406 (+) True trnay-gua
XR_004577785.1 other upstream 993283 11745749 ~ 11766414 (+) False LOC113544122
trnag-gcc other upstream 1052692 11706935 ~ 11707005 (+) True trnag-gcc
XR_004577802.1 other downstream 166918 12929559 ~ 12936802 (+) False spef1
XR_004577803.1 other downstream 166918 12929559 ~ 12936802 (+) False spef1
XR_003404144.2 other downstream 219765 12982406 ~ 12999962 (+) False col17a1b
TU53738 other downstream 269638 13032279 ~ 13033248 (+) False si:ch211-223p8.8
TU54033 other downstream 735451 13498092 ~ 13501046 (+) False pcbd1

Expression Profile