RNA id: XM_026936837.2


Basic Information

Item Value
RNA id XM_026936837.2
length 2696
RNA type mRNA
GC content 0.50
exon number 11
gene id smap1
representative False

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 14673081 ~ 14778488 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GAATATTTCCGCTTCCGGGTTGTCGAGTCCATTTGCCGTATTCCACTGATTCCAGACATCCCGCGCTTCACTGTTGGAAATTGTGTCCGCTGTTGTAACGTGTTGCTTTTTTTCAGGGGATGGTCTTCCATTTAGTGTCGATAAATTAGACAGAGAGCTCCAGGGAAAAGGTTGCGGATTGTGAAACGAAACGTCAGGAAGAAAGCAGGGAGAAAATGACGACGCGCTCGGAGAGGGAGAAGGCTCAGAAACTGAATGAGCAGCATCAGGCCATCCTGTCCAAAATGCTTCGGGAGGAGGACAACAAATACTGCGCCGACTGTGAGGCTAAAGGACCTCGATGGGCTTCCTGGAACCTAGGTGTGTTTATCTGTATCAGGTGTGCTGGAATCCACCGGAACCTGGGAGTGCACATATCCCGCGTCAAATCAGTCAACCTGGACCAATGGACTCCCGAGCAAATCCAGAGTGTGCAGAGCATGGGCAACACCAAGGCCAGACAGCTGTATGAAGCCCATCTGCCAGATAACTTCAGACGGCCACAAACCGACCAAGCTGTAGAGTTCTTCATCAGGGACAAGTATGAGAAGAAGAAGTACTACGACAAAAACGCAGTCACTGACTCTTTTAAGTCTTCTGATGCTGCTTTGCCCTTGGcatcttctccttcttcacAAGCAGCCGAGAAAAACAAACTGGAGgagagagagaagaaaaaggaagagaagaagaaagaaaaggaaacagaTAAAGGGAACAAGCCCACAGTTTTTGACAAGAAGAGAGAGGACATTCAGATAGACTCCAGAGCCAGCCCTAAGAAGAGTGCTGAGCCTGCCATCGACCTGCTAGGCCTGGATGCTCCTGCAGTCAACACAACCAGCAGTGGGGCAGGATCTGGAAGTGCAGCTCCAATAAGTGATGATTTGGACATTTTTGGACCAATGGTGTCCAACCCTCTGCCATCAAGCACCAATACAAACCAGGTCAATTCCGCTAAAGCAGCTGGGAGCACACCTGCAGGCCCTGGTGTGGGAGCTACCTCGGGCACTGCAGGCACAGCAGGAGCCGCTCCAGTTCAGTCTGATCTGGACCTGTTCAGTGAGAACAGCAGCAACAAAGCAGAGGACTCCACCAAGAAACCTCTCTCCAAGGACTCTATCCTCTCCCTGTATGGGTCCAGCGCTGTCCCACAACAACCTGCACAAGcTGCTATGTTCATTGGTACGTCTCAGATGCCATTTCCTGCTCAGCCTCAAGCTAACTTCCCTGCCTTCCCAGCTATGGGCGGCCCCATGCCGCCCACCACCATGATGGGCGCAGTTATGGGCCAGGGCGGGGCTATGATGGGCCAGAATACTGGGATGATGGTTGGCATGACTATGCCCAATGGCTTTATGGGAAACGCCCCGGCGGGAGTAATGGGGGTGGCGCCTGGCATGATGGGAGCGCAGGCTGGAGCAATGCCAGCAGGCGTTGTGCCCCCACAGAACATGTACGCCATGCAGCCTGGCCAGCAGACCCAGTGGAGCATGGGACAGATGAACCAGCAAATGTCTGGGCTGAACCTGAACGGTGCCCCCATGGCCTTTGGGCAGCCCGGGACCGCTATGGGGGGCTGGGTGGGACCTCCTTCTGGTCAGACCCTCAGTACCCAGCTctggaagtgagtgagtgagggagacAAGGAGGACAATAAAGGGTGCAGCATCCCTCCAACCCTCCATCTCCCCTCCCTTGACCAAACGCCAGAGCACACCAAGAGTTTTATCCACGTActgctcttttttccctccctcttcTTTCCAACCATAACTCTTTTACTGGAGGTTGTCAGTTCAACCTTGCCCCTGTGAGTCAACTGAGTGATCGAGAGTGTGAAGAGTTAAAGAGACTGGCAGCTTTGTCCGTcttatttgcagtttttttcttcttcttcttcttcttcttctatatattttttgggttgaaaaaaaattacatatcaGCGAAGAAAGCTGCTGGACCAATATACAAGCGTCTAATATATCATTACCAAATCGATAGTGAATAATAGTATTTAAATGGCAGAGATATGGCTATCATGTTTGTGACCGCCGCCCCCACCACCCCCTTTACCCTGACCAGTGTATATGCCCCATATCCTGAAGCCCTGTAGCAGCTATCGTATGATccaatgtactgtatgtaagcATAAGATAGAGAAGCAGTCAATCCCCCCCTCTCACCTCTCCATCCCTGTACAAGCCCATCAGCTCCATCACCCTCGTCCATCTTTTACTGTGATGTTTTAATGTGTGCATTACAGAGAAGCACAGATAGCAACAGGCAAATAAACCTGGACGACTCAACAGCAGTGTAACGGCCAATGGGAGAAAGGGGCACGAATAAGTAATTGAGCTACAGGGAACAAAAATGAGAGTGGGAGGTGTCTACAGAAAGAATTTGTGTGCGAATAGGAAATAAATTTTAGCTGATTTTTAGAACCGAACAAACGTGCACATATGAACATGCTAGTCCCTTGACTGTGGCAGAGTGAAAGTCCACTCAGACAGGGTCCCTCTGCTGTGCAATAATGTGAGCATCCACACCTCGTCATCCAGGTTTATTTCTataatgtgtttacatttttctggtgCCTagtacagaggaaaaaaaatgttatttccgTGCATTAAACAGTGAGTAGCCATGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU55026 lncRNA downstream 47111 14617653 ~ 14625970 (-) True G46576
TU55042 lncRNA downstream 58317 14614516 ~ 14614764 (-) True G46591
TU55041 lncRNA downstream 59263 14613541 ~ 14613818 (-) True G46590
TU54707 lncRNA downstream 381448 14289556 ~ 14291633 (-) True G46304
TU54560 lncRNA downstream 488995 14183768 ~ 14184086 (-) True G46183
TU55183 lncRNA upstream 158608 14937096 ~ 14937309 (-) True G46680
TU55218 lncRNA upstream 233759 15012247 ~ 15012450 (-) True G46711
TU55261 lncRNA upstream 282368 15060856 ~ 15061173 (-) True G46750
TU55267 lncRNA upstream 286030 15064518 ~ 15065307 (-) False G46754
TU55265 lncRNA upstream 286546 15065034 ~ 15065999 (-) True G46754
XM_026942525.2 mRNA downstream 30344 14630895 ~ 14642737 (-) False ogfrl1
XM_026942516.2 mRNA downstream 30346 14630895 ~ 14642735 (-) True ogfrl1
XM_026932173.2 mRNA downstream 77995 14520938 ~ 14595086 (-) True LOC113537600
XM_026939807.2 mRNA downstream 158387 14388987 ~ 14514694 (-) False kcnq5a
XM_026934198.2 mRNA upstream 1368 14779856 ~ 14784753 (-) True sdhaf4
XM_026943626.2 mRNA upstream 6952 14785440 ~ 14791568 (-) False tlx1
XM_026943619.2 mRNA upstream 6952 14785440 ~ 14791568 (-) True tlx1
XM_026943169.2 mRNA upstream 34217 14812705 ~ 14815300 (-) True lbx1a
XM_034302813.1 mRNA upstream 184461 14962949 ~ 14966801 (-) False LOC113542020
XR_004577668.1 other downstream 480838 14181891 ~ 14192243 (-) True ccdc85a
XR_004577863.1 other downstream 1641885 13005486 ~ 13031196 (-) False slka
trnal-cag other downstream 1938799 12734200 ~ 12734282 (-) True trnal-cag
trnae-cuc_9 other downstream 2004190 12668820 ~ 12668891 (-) True trnae-cuc_9
trnak-cuu_2 other downstream 2004516 12668493 ~ 12668565 (-) True trnak-cuu_2
TU55100 other upstream 1377 14779865 ~ 14784734 (-) False sdhaf4
TU55523 other upstream 635453 15413941 ~ 15416483 (-) False c3h10orf53
XR_004577773.1 other upstream 2200643 16979131 ~ 16982729 (-) False morn4
XR_004577771.1 other upstream 2200643 16979131 ~ 16982729 (-) False morn4
XR_004577772.1 other upstream 2200643 16979131 ~ 16982729 (-) False morn4

Expression Profile