RNA id: XM_026936868.2


Basic Information

Item Value
RNA id XM_026936868.2
length 2118
RNA type mRNA
GC content 0.52
exon number 5
gene id b3gat2
representative False

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 14658756 ~ 14672999 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCTCAGTGCCTCGCATGACAGCGCTGTTATTTCTgaggcagcagcagcatcagagCTGGACCTGCGCACTGTTTCTCAGCTCCAGAGCTCAGAAGCGCATCTCAGAGGAGGGATGGAGGCAAAGCCGGCAATGCGTTCAGGGACTGCTTTCTGTGGATCCAATGCAATAACTGTACCTGTTGTTTGTTATTCCTGCCGTCGCTTTCAATGCTGATGAGTGGAGGAATAGGGTTTTGTCTCGCCTTTAGTCTTTTCAGAGGAGACTGGAAACGCACACAGGATGGCTCGGAAGGAGCCGCTGTAAGAACTGCGTGAGTTTGAACGCTGGTGGACGGTGAGAGAAGCGAAATAAGCACAAAAAGCTGCTTGTGTTAAAATATCCCGCCTGACTGAGATGGATTGGTGATCCCGCGTCTCCGGGAGCGTCCTAACTTTGCCATGATGAAGTCCATCTTCTACAGCCGCTTCTTCATCCTGCTGCCGTGGGTGCTGATCGTCATCATCGTGATAGACATCGACACGAAGAGGTCCTCCGTGCGCAACACGGCGCACTCGTACCTGTCCCGGCTGAGCAGCGCGCCGCGGCGGGACGCAGGGGTCCATGCGCTCAACCGCAGcgcgccgccgccgccgctcATCTACGCCATCACACCCACGTACAGCCGCGCCGTGCAGAAAGCCGAGCTCACGCGCTTGGCCAACACTTTCCGCCAGGTCCCGCACTTCCACTGGATCGTGGTGGAGGACTCTGCAAGTCGCACCGAGCTCGTGTCGCGCTTCTTGGCGCGCGGCCGCGTCCCGTACACGCACCTGCACGTGCTCACTCCGCGCCGCTTTAAACGGGCCGGCATGCCACGCGCCACCGAGCAGAGGAACGCCGCGCTGTCATGGCTCCGCGCGCACCGCACTGCCACCGACTCCGGAGTGGTGTTCTTCGCCGACGATGATAACACGTACAGCCTGGAGCTATTTGAAGAGATGCGTTTGACTAAAGGAGTATCCGTATGGCCGGTAGGACTCGTAGGGGGCCGCAGGTATGAGCGCCCCGTTGTAGAAAACGGCAAAGTGGTGGGCTGGTATACAGGCTGGAAGGCTGACCGACCTTTTGCCATCGACATGGCAGGCTTCGCCGTGAACCTCCAAGTGATCCTAGCTAACCCACAAGCTCTGTTCAAGAGGAGAGGAGCCAAGCCAGGCATGCAGGAGTCTGACTTCCTCAAACAAATAACCAAGCTGGAGGACCTGGAGCCAAAAGCTCGCAACTGCACCCAGGTCCTGGTTTGGCACACCCGCACAGAGAAGGTCAACCTGGGCAACGAACCCAAACGGCACCAGGACTCTGTTCTGATTGAGGTCTAGTGGACAGGACTGGCGTGGGAGGCCTCACAGCATATTGACCCAAGTAGCCACTATCCCTGGTACTTTCCCAATTAGTGTCAACCTCTGGACTGAGAGCCTGCTGATTCATGCTGGAATCTCTGTGTGAACTCTGATGTCTGTGTCATCTAACTCAACACTTTGGACCATCCAATTTAGTGAACTTATTTCTGACTGCATAAATTGGCTGGGCATCATTTTGTTAATGAGAATATCCCATCATACTGAGGAAGCATACTGAGTTACTAGTAAAGAACTCAACTTTTAAACCCGTATCATTCGGTACAGCTGTCTTCACTGGCTGCTAGTAGAAACTTTTACCTTAAGACTGAAGAGAAAATCTGGAGTGAAAGCACCTGATGAAATCACAATGATGATTCAATGTCTCTTTCACCCTAGAGAACGTAATATATACTTGGGAACAGTTGGAGAACACTAAGTATATGAAGCTGGAAGCATCTGAAGAAGAGCCAGCTGTTGGAGAAAGAACATTTGGCTTAAATGTACATTCAGTGGACGTACGTAACTGTAGCTATACAAGTTCATTGTATTTAAGCAGTTATTGgataaagctttctgtaaaaagaCTTTATTGCCATGAATGTGTTGCTATGAGCCTGAGAAAATGGACATAAAGAAAGATCCAGGACAATGCCAACACCCTGAACCCAGCACTACAGGAACAAACCTTCGGATTACAACTGTCTTTATTCCAAATGACCCtctttaaaagcaaaaaaa

Function

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0015018 galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_003404224.2 lncRNA upstream 32266 14617616 ~ 14626490 (+) True LOC113541837
TU54849 lncRNA upstream 32283 14624473 ~ 14626473 (+) False LOC113541837
TU54851 lncRNA upstream 32384 14617654 ~ 14626372 (+) False LOC113541837
TU54850 lncRNA upstream 32384 14624473 ~ 14626372 (+) False LOC113541837
XR_004577856.1 lncRNA upstream 32530 14617608 ~ 14626226 (+) False LOC113541837
TU55126 lncRNA downstream 292907 14965906 ~ 14967115 (+) True G46638
TU55127 lncRNA downstream 292907 14965906 ~ 15011989 (+) False G46638
TU55130 lncRNA downstream 299591 14972590 ~ 14973888 (+) False borcs7
TU55220 lncRNA downstream 341124 15014123 ~ 15015181 (+) True G46713
TU55286 lncRNA downstream 406814 15079813 ~ 15084310 (+) True G46765
XM_026940158.1 mRNA upstream 46786 14595202 ~ 14611970 (+) True asrgl1
XM_026943359.2 mRNA downstream 184930 14857929 ~ 14871099 (+) True slc2a15a
XM_034301900.1 mRNA downstream 225823 14898822 ~ 14904713 (+) False fgf8a
XM_034301895.1 mRNA downstream 225826 14898825 ~ 14904713 (+) True fgf8a
XM_026945446.2 mRNA downstream 237900 14910899 ~ 14936204 (+) True fbxw4
XM_026939277.2 mRNA downstream 273834 14946833 ~ 14961193 (+) True wbp1la
XR_004577898.1 other upstream 291310 14361367 ~ 14367446 (+) False cgas
XR_003404567.2 other upstream 375588 14213402 ~ 14283168 (+) False slc24a3
TU54033 other upstream 1157710 13498092 ~ 13501046 (+) False pcbd1
TU53738 other upstream 1625508 13032279 ~ 13033248 (+) False si:ch211-223p8.8
XR_003404144.2 other upstream 1658794 12982406 ~ 12999962 (+) False col17a1b
TU55629 other downstream 1120429 15793428 ~ 15797204 (+) False eif4ebp2
XR_003404341.2 other downstream 1397715 16070714 ~ 16073067 (+) True cxcl18a.1
TU55689 other downstream 1397760 16070759 ~ 16071920 (+) False cxcl18a.1
TU55884 other downstream 1561536 16234535 ~ 16236648 (+) False lrrc18a
XR_003403773.2 other downstream 4668351 19341350 ~ 19356098 (+) True sfxn5a

Expression Profile