RNA id: XM_026936938.2


Basic Information

Item Value
RNA id XM_026936938.2
length 4010
RNA type mRNA
GC content 0.45
exon number 17
gene id klc1b
representative False

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 12291787 ~ 12330928 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CGATGACTCGGTGATGCTTTCTTTTCTACAGTCTCGACATCTAGCTTTAAGATAAGACGAGCCTGTTATTGTGATTCAGGGGCGGATGGTGTTGCTTTGCTGACAGGGTTTGGCCGTGTGTGAAGCATTGTTTCAGCAGTGTGCGACGCTGTTTTGCTATGAGGATCTGGTGCTGACGCTGAGGTTGCCCCTCTGATAGAAGATGTCCACAATGGTGTATCCTCGTGAAGAGAAGCTGGAGAAGCTAACGCAGGAGGAGATCATCTCAAACACTAAGCTGGTGATCCAAGGCCTGGAGGCACTGAAGAGCGAGCACAACTCTATCCTGCACAGCCTGCTGGAGACCATCAAGTGCCTGAAAAAAGATGAGGAGGCCAACCTTGTGCACGAGAAGTCCAACTTGCTCCGCAAATCTGTGGAGATGATTGAGCTGGGCCTGGGGGAGGCGCAGGTCATGATGGCTCTGTCTAATCACCTTAATGCTGTGGAGTCAGAGAAGCAGAAGTTGCGGGCGCAGGTGCGGCGTCTGTGCCAGGAGAACCAGTGGCTGAGGGACGAGTTGGCCAACACGCAGCAGAAACTGCAGAAGAGTGAGCAGAGTGTCGCCcagctggaggaggagaagaagcaCCTGGAGTTCATGAATCAGCTCAAAAAGTATGATGAAGATGTATCACCCTCGGAGGAAAAAGATGGCGACCAACCTAAAGACTCTTTGGACGATCTTTTCCCTAATGATGAGGAGGAACATGGCCAAGGAATGCAGCACCAGCACAACAGTGCAGCCGTGGCAGCAGCGCAGCAGGGAGGATATGAGATCCCAGCCCGCCTCCGAACCCTCCACAACCTGGTGATCCAGTACGCCTCTCAGGGTAGATATGAGGTGGCAGTGCCACTGTGCAAACAGGCTCTGGAGGACCTGGAGAAAACCTCGGGCCATGATCATCCCGATGTTGCCACAATGCTCAACATCCTCGCCCTGGTGTACAGGGATCAGAACAAATATAAAGAGGCAGCACACCTGCTCAATGATGCTCTGTCCATCAGGGAGAAGACTCTTGGCAAAGACCATCCTGCAGTGGCTGCCACCCTGAATAATCTGGCTGTGCTGTACGGGAAGAGGGGCAAATATAAGGAAGCTGAACCACTGTGTAAGAGAGCCTTGGAGATCAGAGAGAAGGTGCTTGGAAAGGACCACCCAGATGTGGCTAAGCAGCTGAACAACCTGGCCTTGCTGTGTCAGAACCAGGGCAAGTATGAGGAGGTGGAGTACTACTACTGCAGAGCTTTGGAGATCTACGAGTGCAGGCTGGGCCCTGATGACCCTAACGTCGCCAAGACCAAGAACAATCTGGCGTCATGCTTTCTCAAACAAGGAAAATACAAGGAGGCTGAGATTCTTTACAAAGAGATTCTCACCCGTGCCCATGAGAAGGAGTTTGGATCAGTTGATGCTGAGAACAAGCCTATCTGGATGCATGctgaggagagggaggagatgAGCAAAGGCAAGCATAGAGACAACACCCCATATGGAGAGTATGGTGGCTGGTACAAGGCCTGCAAAGTCAACAGTCCGACTGTGAACACTACTCTGAGGAATTTGGGTGCGCTATACCGCCGGCAAGGCAAGATGGAGGCTGCGGAGACCCTGGAGGAGTGTGCCACGAGATCCCGCAAGCAGAGTAACTCAGGGATCGATCCCATCAACCAGAGCCGCGTGGTTGAAATTCTGAAGGAGGGTGATGGAGATAGGAGGAGGAGCAGGGACAGCATGTCCAGCGTTAAGTACGATAGCAGCTCAGAGGCTGGAGAGGAAGTGAGTATGGGCATAGAGTGGAGCGGGgATGGTAGTGGGGCTCTGCAGAGGGGCGGATCTCTGGGGAGGATCAGAGAAGTGCTGCGTAGAAGCAGCGAAATGCTGGTGAAGAAACTGCAAGGAAACGGACCTCCAGAGCTGCGCTCCACCTCCAATATGAAGCGCGCTGCCTCCCTCAATTACCTGAACAGGTCGAATGATGATCCCTACCAGaACCCTGGGATAAATAGGTTGAGGCAGAGCCGTGGCTTGAGCTCCAGTAATTTGGATCTGTACAGTGGAAATTGAGAAAATGCCTCTACAACTCCAGCTATGACCGTACCAAGCCATTCCTACTGCACAACCCAAATCCTTCACTTTTAATAAAAGCCACACCTGACAAGATCTCAGCTATCCACAAACCTGGTCCTACAATAAATTAGTCAATGCTCTTGGAAGGTTTGCACTCTCCAGCTCTCACTTATGCAAAATATAATTTAGACATTTGTTACAGTCTGttagaaggtttttttttggtcttactTTCTGTTACCACACTTTCTCATTGTTACCCTAACAGCTATGTTACAGGGTACATGTATCTTGAACTAAAGTGTCTGCTACTGTGTCAGCCAGGAAATATCCTAGATGGTGCCATGCTATTATTCTCACTTAGCATCTTCCAGTAAAACATTCTTCCCTAGCTAAAGTTATTTGAGTCATGTAGCAGacttttattaatgcatttttatatttgtgtaaaatataaGTTGAAAATTTTTGGTACATcttgttttatgtaaaaaatcTTCTCAGtctttgtaaataatttttgctTTTGCCTTTTTGCTTTTTATCTGATCTTTTGGGGGATGCATGGCTGAAATGAGAAAAGCCAGCTTTGTATCTTTcactttcatcatcatcatcatcatcatcatcatcatcattgtatCGTGTTGGTCCTGGACTGTTACTGTATCTACACTTCCATATCCTACAGAGAAGACAATGCTTTGCTAAATTCTGTATTGCTATAGGCTAAGGAATGAGGTATTAGATAGCTGTAGAGAGGAATACCCTGAAATATTGAAACACAGAAACTTGGTTACTGGGAAGTGCATTATTATTGTAGCTTATTTATAGTAAaagggcaaaaaaacaaaccctggACCAACAGCAATGTGTATAATGAGGCACTACATGTCATTTAAACACTAACTATATTTTCTAAAGCTTGAGGTTATGGGCTTTGTTACTGTATGCAGCGTTTTAAAAGTGAATTTAGTCTCTTAAACATATAAACTTACTATGTCTGTTACTGCTGAGCTTTACTGTAAGCATTATCATGATGGTGgaatgtactttttaaaaaacgtTTTGTCTCTTTTACTTTGAATGCTATTCTGTTTTAAAGAGAATCATTGCATGTGATTGGATCTTCCTTTTAGCTTGATCCTTCTACTGAGTTGTGTTACTGAAACTGGCTGTGTAACATTTTCACTGTGGGGAAATGTGGTATAAAATGGGCCGACTGGGAAACCAGTGCATTATAATGATGTGCCAATTACTGTAAGTACAAGGTTTGTTGAATGTGAGTGGTACAGGAGTTTCTCAGGTAACGCCAAATTTATAAGATgcttatgtaataaatatgaaaccCTGCAAGCATGTTAAGCTGTAAAAGTTAATATTCCATATAAAAATGCATTGACACTATCGGCGTGATGATAGTCACACTGATGTTTCCTTTGAGCTGTTTTTGTGTATGATATCGCAGGTTTTTTGTGAAACATTTGGCATATTTCTTACAAAGAACCAAAGTACTTTACCAATTTTATGCACGCTTATAATTCCTCATAGTGTGATTAGGATTTTATAATGCTGATGATGTgtgaaggatttttttaaatgttacacaaGGCAATGTGCTTGAATGTTTTATAAGCCTCGGAGACTTTTACTGGTAGAGTGTTACACGTAATAGTGATGGGGAAAGGTCAGTATGGATTTTTAAAGAGGGCTCTGCATGACTTCAGCTAAAtgatttaactgtaaaatgctTTCCTCTGAACTCCACAGGTGTTGGGTACGATAGCCATAGAAGCCCTGCTGTTGGGTATAACTGCCATCTGTATGATTTATACCCTCATATTTTGTGGCGTAAAACATGTTgtgatgaaaataaatcattcaaCCTTCTATGGCATTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004577842.1 lncRNA downstream 49666 12241609 ~ 12242121 (-) True LOC117596852
TU52939 lncRNA downstream 270319 12010931 ~ 12021468 (-) False pwwp2b
TU52938 lncRNA downstream 283758 12007826 ~ 12008029 (-) True G44848
TU52909 lncRNA downstream 377758 11912210 ~ 11914029 (-) True G44820
TU52906 lncRNA downstream 451965 11839452 ~ 11839822 (-) True G44818
TU53441 lncRNA upstream 44206 12368513 ~ 12369349 (-) True G45249
TU53462 lncRNA upstream 110967 12435274 ~ 12435483 (-) False nin
XR_004577879.1 lncRNA upstream 302739 12627046 ~ 12627481 (-) True LOC117596889
XR_004577878.1 lncRNA upstream 303370 12627677 ~ 12628388 (-) True LOC117596888
XR_004577880.1 lncRNA upstream 304165 12628472 ~ 12629256 (-) True LOC117596890
XM_026936926.2 mRNA downstream 1935 12190217 ~ 12289852 (-) True ptk7b
XM_026942027.2 mRNA downstream 105174 12156217 ~ 12186613 (-) True srfb
XM_026942017.2 mRNA downstream 105175 12156217 ~ 12186612 (-) False srfb
XM_026944921.2 mRNA downstream 139265 12144840 ~ 12152522 (-) True tmem254
XM_026940033.2 mRNA downstream 261643 12021991 ~ 12030144 (-) True LOC113542467
XM_026944957.2 mRNA upstream 18928 12343235 ~ 12356768 (-) True cdkl1
XM_034302694.1 mRNA upstream 33965 12358272 ~ 12401487 (-) True map4k5
XM_026932564.2 mRNA upstream 97974 12422281 ~ 12431644 (-) True sav1
XM_026940747.2 mRNA upstream 110802 12435109 ~ 12465063 (-) True nin
XM_026940757.2 mRNA upstream 110803 12435110 ~ 12465056 (-) False nin
TU53378 other downstream 139281 12144895 ~ 12152506 (-) False tmem254
trnag-gcc_1 other downstream 583103 11708614 ~ 11708684 (-) True trnag-gcc_1
TU51003 other downstream 3062903 9224881 ~ 9228884 (-) True sf3b5
TU50809 other downstream 3437993 8801243 ~ 8853794 (-) True G42967
TU53492 other upstream 200329 12524636 ~ 12534075 (-) False LOC113537616
TU53486 other upstream 207136 12531443 ~ 12534075 (-) False LOC113537616
TU53537 other upstream 307506 12631813 ~ 12633015 (-) False LOC113539135
trnae-cuc_8 other upstream 314945 12639252 ~ 12639323 (-) True trnae-cuc_8
trnak-cuu_1 other upstream 315223 12639530 ~ 12639602 (-) True trnak-cuu_1

Expression Profile