RNA id: XM_034302735.1


Basic Information

Item Value
RNA id XM_034302735.1
length 1423
RNA type mRNA
GC content 0.39
exon number 8
gene id si:dkey-228d14.5
representative False

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 18898163 ~ 18903520 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ACCTGAAGAGACATGGCATTCTGGATTATTTTACCCATCAGTCTCAGTGCTGTTTCATTCATCGGATGCTGGACGGTGTATGGACTTGCATTAAGATTCCACCATGTCTGCTCACTCAGTAACTGTGATGTACCAGTATTACAAGGCTAACATTGCTTCAATGATTACGATGCCATTACTGAATCATCACTCAGGTCACACTGCTGGGATCTTCTATGTAGTTGTTGATACATGGAATACAGCAACTCATGTCTGACAAATGAAACTGGAAGTTGCTGCACGGGACATAACATACCCACCATAAGTGGAAGTGGAACCAACTTTCCAGAAAATTCCCTGTTTAGTGCTACAATCAATGGGGCTTCATTTTTATTTGTGGTTTTCAGTATTTTCCATCATGCACATATCGTGAAAAAGTGCAGTGTGCACTCTCTCCTCAGTAAATGTGCCATGGTCTTTGGTTGTATCGCTGGAGTTGGAGCCTTTGTGGCTGGAAACTGCAATCCAGCAGAGCTGATGTTTCTGCATAACCTAGGTGCTGCTTTGAGCTTCGTGTGTATCTGCTTCTACACGGTGTTGCTTACATTTCTGACAAGCAGGTGCATGCTAACTGGACTCGAGCGTGCCCTCTACCCAATACGCATCGTCTTCTCCAGCATTCAGGTCATACTGACCATCCTCTATTGCATCTTCTTTTCTCAAAAGGAGTTCTACTACAGGCACATTTCTGCCATTTTCGAGTGGACACTCAGCATGAACCTGGAGCTCTTCGAACTCAGCTATGCTGTAGagttttatttcttctcttctgCAATGCTTTCGGTACTTCTCTCAAACAGGGATGAAGAGAGCACTATCATTTTGTCCTGATGGCTGACATTTTGCCTTCTCTTCCTTTAGGTTATTAAGCAACAAATCTTTATTTCTTAGTAGCTTGTGTTCAAATTGGAAAGTCTAGAGAGATTGTTAGAGATGCAAACCTGTAAACTGGCCTGTGACTCAGGCATGTAAGCATATTTTTTGCACAAATGCAACCCTCAGCCTTGGTTGGAATTTCATACCTGCAgtattctgtaaatgttaaatatacgCAGGCTGTATATGTTACAGAATTCTCCCTCGGTAGTCACTGTAGTTAGCTTATTTAATCTAATCACAAAATACCTCTAACACTGAAagattttatagaaataaattcatattatatgtatatggtGGGGATGTAAATTTTGTCACGATTGGATAAAGCACATTTAGTATGTTTTGAGAAATCTAggcatattacattacatttatacagTGTTTATATCATATGctctgtaatgtaaatgtaaataaacaactCTCATCTACACAAGACAACACTAAGTGGCTAccaaactgaattaatttaaaGACCAATAAATTGAACTGTTTTGTTTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU57878 lncRNA downstream 7351 18890563 ~ 18890812 (-) True G48947
TU57868 lncRNA downstream 44450 18853513 ~ 18853713 (-) True G48940
TU57866 lncRNA downstream 53528 18843753 ~ 18844635 (-) True G48938
TU57364 lncRNA downstream 724981 18167020 ~ 18173182 (-) False G48476
TU57886 lncRNA upstream 25179 18928182 ~ 18929502 (-) True G48954
TU57908 lncRNA upstream 54154 18957157 ~ 18957459 (-) True G48970
TU57913 lncRNA upstream 66588 18969591 ~ 18969796 (-) True G48975
TU58001 lncRNA upstream 149524 19052527 ~ 19052751 (-) True G49053
TU58066 lncRNA upstream 287324 19190327 ~ 19190615 (-) True G49108
XM_026932472.2 mRNA downstream 46056 18845152 ~ 18852107 (-) True slc25a16
XM_026945920.2 mRNA downstream 60366 18831551 ~ 18837797 (-) True alox5a
XM_026940107.2 mRNA downstream 69841 18810075 ~ 18828322 (-) False washc2c
XM_026932754.2 mRNA upstream 108978 19011981 ~ 19018909 (-) True mat1a
XM_026934553.2 mRNA upstream 133989 19036992 ~ 19044321 (-) True sfxn3
XM_034303009.1 mRNA upstream 162030 19065033 ~ 19114569 (-) False lzts2a
XM_026942868.2 mRNA upstream 162030 19065033 ~ 19082306 (-) True lzts2a
XM_034302895.1 mRNA upstream 235492 19138495 ~ 19171153 (-) True sema4ga
TU57664 other downstream 284762 18330368 ~ 18613401 (-) True lrmda
TU56951 other downstream 1236779 17657581 ~ 17661384 (-) False col13a1
XR_004577786.1 other downstream 1323741 17562332 ~ 17574422 (-) False LOC113538666
XR_004577787.1 other downstream 1323741 17562332 ~ 17574422 (-) False LOC113538666
TU56907 other downstream 1422102 17471187 ~ 17476061 (-) True cisd1
TU58169 other upstream 413484 19316487 ~ 19319733 (-) True G49195
XR_004577815.1 other upstream 732835 19635838 ~ 19667661 (-) False atrn
TU58944 other upstream 1454931 20357934 ~ 20369097 (-) False gng2
TU58943 other upstream 1454985 20357988 ~ 20369097 (-) False gng2
TU58946 other upstream 1454985 20357988 ~ 20369429 (-) False gng2

Expression Profile