RNA id: XM_026937057.2


Basic Information

Item Value
RNA id XM_026937057.2
length 1781
RNA type mRNA
GC content 0.39
exon number 7
gene id eif4e1c
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 18891221 ~ 18895398 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GAGTCATTCATTAGCAGTGACGCGGTGTAGGAGTCCGCGTGACTTCAGCGGGTTGCCGTAGTTTCCGGTTGGCTGTGTGACGTAACGAAGAGCAAGAAGAATTTTACAGGCAAGATGGCGACTTCGGAGCCGCGAGGACCTGAAAGTGAAGAGGGCTCGAATGATAGTCCCACACCAGCTGCTGCCAGTCCTGAACAGTACATAAAACACCCTTTGCAAAACAGATGGGCTCTCTGGTATTTCAAAAATGATAAGAGCAAAAGCTGGACAGAAAACCTGCGACTGATCTCCAAGTTCGACACAGTGGAAGATTTCTGGGCGTTATATAACCACATACAACAACCCAGTAAGCTTGGATTTGGCTGTGATTACTGCTTATTTAAGGATGGGATCAAGCCCATGTGGGAGGATGACAGGAATAAACTTGGAGGGAGGTGGTTAATGACGCTCGGCAAACAGCAGCGACACAATGACCTCGATCGCTACTGGATGGAGACACTGTTGTGCTTAATTGGCGAGTCTTTTGACGAAGCCAGTGAAGATGTTTGTGGAGCAGTAGTTAATGTTCGTCCAAAGGGGGATAAAATATCCATCTGGACAGGCAACTGCCAAAATAGGGAAGCTATTATGACGATAGGGCAACAATACAAAGAGCGCTTGAATCTCCCCGTCAAAAACATTATTGGATACCAGTCCCACGATGACACCTCTAGCAAAAGTGGCTCTACGACAAAGAACATGTATTcggtttgaagaagactttcaAGTTGTAGgtttataaaattacaaatttgCATCACATTATTATGTTTAAGTTGTCAACTGCTGTAGTGTccttccttttaaaaaaaaaaaaaaaagaaaaagaaaagaaaagtaagaaagaaaatgtgcatTTGTAGTAATCCATTCTAAATGAACCAAGAATATCTAATGGTTTTGACCTATGTGAGGAACTGCATCAGCTGAAGCTATGCGAATCATGCTAGATGATATTTTAGAATTCAGACATTACGCTAATTAATAAAAGTGGCCTAGCTTGAAAAGTTTATGGCTTAGATTGAAAAGACACTGTTCTTtcctttatcctttttttttctcatgcttCTTGATATGAAAACatacgggaaaaaaaaaaactatgaataCACAAGGACAAAAGGGCCGACAGCttaattcacacacattttatggGCCTCAACTATTTTAACATGCTTTGGTTAGAGGTGTTTGGCATGAGACATGACTGCAGAGGCGCCTGTAGAGAGAATATCATAAAGGTTTGTAATAAATGAGCTTCGGTTGCTCTCCAGGTTTGAGATTTGGACGAGCGGCCAATTATTGTTTCAGCTATGCTGGAAGTGTGGAGTCTTGCTTGCGGACCTACTTTCATCTTTTGTGTTAGCCCCACATATATTTATGACCTACGCATTGCCGTTGAGCTACTTAGTGAGAGGATGACTTAAAAACCCATTCTGTTTTCCATTAttatttcctttcctttgttttttgaAGTTGTTAGTAATGTGGACTACTACTACTTAATATAGAACATTTTTACAGTGAATTATATAGTAAATACATATACAGCCATGCTTTTAGGTGTGCTTTTCACCTTTTCCTCTTACAATCAGCATTGTAAACGTCTAATTTGCACCACTTTTGGgtgaattaaaatgaagacaATACttattgtgaatttattttgcTCATAATGTATCTATCTGTAATTCCAGGATTGTATATTACCTTCTTCCAAAGTAAAGTTGACATGCTTTGCA

Function

GO:

id name namespace
GO:0006413 translational initiation biological_process
GO:0005737 cytoplasm cellular_component
GO:0003743 translation initiation factor activity molecular_function

KEGG:

id description
K03259 EIF4E; translation initiation factor 4E

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU57584 lncRNA upstream 179926 18708032 ~ 18711295 (+) False G48690
TU57585 lncRNA upstream 180850 18708032 ~ 18710371 (+) True G48690
TU57373 lncRNA upstream 189315 18673311 ~ 18701906 (+) False G48482
TU57371 lncRNA upstream 189315 18677230 ~ 18701906 (+) True G48482
TU57372 lncRNA upstream 189315 18700856 ~ 18701906 (+) False G48482
TU57821 lncRNA downstream 16088 18911486 ~ 18912177 (+) False zgc:110319
TU57833 lncRNA downstream 72008 18967406 ~ 18967777 (+) True G48908
TU57836 lncRNA downstream 75400 18970798 ~ 18974710 (+) True G48911
XR_004577820.1 lncRNA downstream 118793 19014191 ~ 19015574 (+) True LOC117596836
TU57789 lncRNA downstream 131609 19027007 ~ 19036636 (+) False selenou1a
XM_026935928.2 mRNA upstream 7790 18852702 ~ 18883431 (+) False tet1
XM_026935913.2 mRNA upstream 7790 18854841 ~ 18883431 (+) True tet1
XM_034302756.1 mRNA upstream 7790 18854841 ~ 18883431 (+) False tet1
XM_026934506.2 mRNA upstream 191542 18695720 ~ 18699679 (+) True LOC113538988
XM_026933079.2 mRNA upstream 199443 18688477 ~ 18691778 (+) True ifit8
XM_026937020.2 mRNA downstream 7040 18902438 ~ 18912195 (+) True zgc:110319
XM_026936555.2 mRNA downstream 18184 18913582 ~ 18933062 (+) False ccar1
XM_026936546.2 mRNA downstream 18287 18913685 ~ 18933062 (+) True ccar1
XM_026943192.2 mRNA downstream 44367 18939765 ~ 18956226 (+) True stox1
XM_026938324.2 mRNA downstream 62986 18958384 ~ 18963875 (+) True si:ch211-198a12.6
TU55884 other upstream 2654573 16234535 ~ 16236648 (+) False lrrc18a
XR_003404341.2 other upstream 2818154 16070714 ~ 16073067 (+) True cxcl18a.1
TU55689 other upstream 2819301 16070759 ~ 16071920 (+) False cxcl18a.1
TU55629 other upstream 3094017 15793428 ~ 15797204 (+) False eif4ebp2
XR_004577898.1 other upstream 4523775 14361367 ~ 14367446 (+) False cgas
XR_003403773.2 other downstream 445952 19341350 ~ 19356098 (+) True sfxn5a
XR_004577568.1 other downstream 445952 19341350 ~ 19356098 (+) False sfxn5a
XR_004577569.1 other downstream 445952 19341350 ~ 19356098 (+) False sfxn5a
XR_003403774.2 other downstream 445952 19341350 ~ 19356098 (+) False sfxn5a
XR_003403775.2 other downstream 445952 19341350 ~ 19356098 (+) False sfxn5a

Expression Profile