RNA id: XM_026937093.2


Basic Information

Item Value
RNA id XM_026937093.2
length 1989
RNA type mRNA
GC content 0.51
exon number 12
gene id sufu
representative False

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 20445420 ~ 20461102 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCTGATTGAACAGAACACGTGTCAGTCAAAGtaagaggccacgcctcccgcTGACCCCGCAAACCCTGGGGGAGACGAGTGTTCAGGGTTTTTAAAAGATATATACGCTGGAATAAAGTTAACTTTTTGCGCGAGGATTATCACTTAAGAGGGTTGTTTTGTACTTTTGTGAAGGGAGCGTTAGGATTTCGGTATTTTCGGAGGGCTTTTCCATTCTTTTCGGGTGTCGTGGTGAAGGATGGATGAGATGCGGCCTAGCGGCGGAGCGGCTGGCCACCTCGGGCTCGCCTCGCTCTTTCCGCCGGGTCTGCAGGCCATCTATGCGGAGTCCCGGCGCCTGTATCCCGATCAGCCAAACCCGCTACAAGTCACTGCCATCGTTAAGTACTGGTTAGGGGGGCCAGATCCTCTGGACTACATAAGCATGTACAGGAACGTGGGATGTCCTGCTCTGGATGTCCAGGAACACTGGCACTATGTGAGTCTTGGCCTGAGTGATTTGTACGGAGACAACAGAGTTCATGAattCACTGGTCCAGAAGGTCCAAGTGGATTTGGCTTCGAGCTTACATTTCGGCTGAAGAGGGAGCCCGGTGAGACGGCTCCCCCCACCTGGCCAGCTGAGCTTATGCAAGGTTTGGCTCGGTACGTCTTTCAATCAGAAAACACATTCTGCAGTGGTGACCACATTTCATGGCACAGCCCACTAGACAACAGCGAGTCCCGAATCCAGCACATGCTGCTCACAGAGGATCCCCAGATGCAACCTGTACAAACCCCCTTTGGGATGGTCAGCTTTCTTCAAATCGTGGGGGTGTGCACGGAAGAGCTCCAGGCAGCACAGCAGTGGAATGGACAGGGCATTTTGGACCTGCTCCGtggagtgcgtgtTGCTGGAGGTCCCTGGTTAATCACTGACATGAGGAGAGGGGAGACTATATTTGACATTGATCCTCACTTACAACAGGAGAGGGTGGATAAAGGCATTGAAACAGACGGCTCTAACCTGAGCGGTGTCAGTGCCAAGTGTGCATGGGATGACCTGAGCCGACCTCCCGAGGATGAGGACGACAGCCGCAGCATCTGCATTGGATCACAGCCACGCAGGCTGTCTGAGAAAGACACCGAACAGATCAGGGAAGCCCTGAGGAAAGGACTGGAGATTAACAGCAAGTCAGTCTTACCCCCCATTAACAGCCAGAGACACCATCAAGACCGGCCAGTAAGTCGTAAGGACAGTCTGGAAAGTGAGAGCTCATCTGCTATTGTTCCTCATGAGCTGGTGAGGACGCGACAGCTGGAGAGTGTGCACCTCAAGTTCAATCAGGAGTCTGGAACTCTGCTCCCACTGTGCCTTAGAGGTCGCCTCCTTCACGGGAGGCACTTCACATATAAAAGTATCAATGGTGACACGGCAATCACTTTTGTATCCACTGGAGTGGAGGGTGCCTTTGCAACAGAAGAGCACCCCTACGCTGCTCATGGGCCTTGGCTACAGATCCTTCTCACTGAAGAGTTTGTGGAACACATGCTAGGCGACCTTCAGGATCTGAATATTCGTGACGAGTCCAAGCTACCAAAGGAATACAGCTGGCCTGATAAGAAGCTGAAGATTTCTATCCTGCCAGATACAGTGTTTGACAGCCCGCTGCAATAAGACTGAGAAGCTGTGTCTCTCCCCACGTCTCTAGAGAAGTGCTGAGCTGCAGGGGCTCCATAGAGACTCGTGCTTATACACGGACTTTTAATGGACACGTAGACAGTTGACTCCCTCTCAGACAGCTGTTGGCACAAGACACTGAATATGCCTTTTTTCACTAAGTATTAACTCCATCATAGCATTTACACTTCAGATGTTTCTGCTGAATGCATTGTGTCCAAATACCCTCATACCCTTTATCTTCAAAAGTCTACCTGTGTGCCTGTAGAATGTGTATAGAagatttttgaatatttttttgaatattcGATATGGTTGTACTGAAAAAG

Function

GO:

id name namespace
GO:0030097 hemopoiesis biological_process
GO:0002088 lens development in camera-type eye biological_process
GO:0045879 negative regulation of smoothened signaling pathway biological_process
GO:0033333 fin development biological_process
GO:0035301 Hedgehog signaling complex cellular_component
GO:0008134 transcription factor binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU58921 lncRNA downstream 84969 20297118 ~ 20360451 (-) True G49797
XR_003403784.2 lncRNA downstream 93944 20349410 ~ 20351476 (-) True LOC113537651
TU58849 lncRNA downstream 217841 20224966 ~ 20227579 (-) False atp10d
TU58804 lncRNA downstream 228990 20215653 ~ 20216430 (-) True G49700
TU58755 lncRNA downstream 239827 20182053 ~ 20205593 (-) False metap1
TU58937 lncRNA upstream 2792 20463893 ~ 20464950 (-) True G49806
TU58979 lncRNA upstream 11376 20472477 ~ 20473295 (-) True G49836
TU58984 lncRNA upstream 16607 20477708 ~ 20478688 (-) True G49841
TU59102 lncRNA upstream 38432 20499533 ~ 20500791 (-) True G49941
TU59106 lncRNA upstream 39695 20500796 ~ 20502665 (-) True G49942
XM_026940791.2 mRNA downstream 3188 20427871 ~ 20442232 (-) False trim8a
XM_026940782.2 mRNA downstream 3188 20427871 ~ 20442232 (-) False trim8a
XM_034302970.1 mRNA downstream 3188 20427871 ~ 20442232 (-) True trim8a
XM_026941752.2 mRNA downstream 75975 20357970 ~ 20369445 (-) True gng2
XM_034302973.1 mRNA upstream 93392 20554493 ~ 20573783 (-) False desi2
XM_034302972.1 mRNA upstream 93392 20554493 ~ 20565432 (-) False desi2
XM_026937225.2 mRNA upstream 93392 20554493 ~ 20565432 (-) True desi2
XM_034302990.1 mRNA upstream 158831 20619932 ~ 20629167 (-) False zbtb18
XM_026943039.2 mRNA upstream 158831 20619932 ~ 20627284 (-) False zbtb18
TU58946 other downstream 75991 20357988 ~ 20369429 (-) False gng2
TU58944 other downstream 76323 20357934 ~ 20369097 (-) False gng2
TU58943 other downstream 76323 20357988 ~ 20369097 (-) False gng2
XR_004577815.1 other downstream 777759 19635838 ~ 19667661 (-) False atrn
TU58169 other downstream 1125687 19316487 ~ 19319733 (-) True G49195
TU59887 other upstream 1150673 21611774 ~ 21614267 (-) False plekhh2
trnai-uau other upstream 1435083 21896184 ~ 21896277 (-) True trnai-uau
TU60082 other upstream 1488754 21949855 ~ 21950189 (-) True G50837
TU60345 other upstream 1574184 22035285 ~ 22101383 (-) False LOC113540944
XR_003404067.2 other upstream 2313254 22774355 ~ 22788783 (-) False znf318

Expression Profile