RNA id: XM_026937279.2


Basic Information

Item Value
RNA id XM_026937279.2
length 6325
RNA type mRNA
GC content 0.46
exon number 12
gene id znf318
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 22774355 ~ 22788804 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ACTAACTGtacgtcacttcctgtttagaTAGTCGAATGGCGGTGCAGGAAGTAGTTTAAACACGGTTTGGTTGCGAGCGTTGATGCGACTGGCGCCATGTACCGAGGCCCTAGGCCGCACCGAGGAGCGTATCCTCCTGCAGCGTCTCGCGGCTTTGCTCCCCGCGGCCCGCCTCCTGCCAGTTCGTTTCCTAGCGCTCCGTACCGTAATGAGCACGCGCGAGGCAGCAATGGCTATCCGCATGGCTACCGTCGACACCCGGAGCATCCGAGGAGGCGCTATTCATCACCGGGAAGAGGGTCGGCGGAAGATTTCAGAGGCGATGGGCCTCCCCCTAGAGACTACGGCCATAGATATACCCCTTCACCCCCACATGGTGGTCTCCCCACTGACCATAGTCTTGTTATAACTGTGGGTAACGAGTTGACAGGTTTATCCCAGAGCGCAGGAGCAGAGATTCCCTATGCCAGaGATTATTCTCCACACCGGTCAAGCTACGAGGGCCATGATGAGCGTAGTTTAAGAAGGCGCAGTCATAGTCGTTGTAGGAACAGGGGCTGGAGCCGCAGCCCAGACAGAATTCATAGCAGAAGTCGTCCTCGCAGCAGGAGCCGTAGTCGTGCAGTGAGCCGCAGCAGGGCACTGAGCCGAGGACGTAGCAGACCACGCAGCAGGAGTAGGAGTAGGACCCGGAGCAGGGGAAGGAGTAGAGCGAGGAGCAGGGCGAGGAGCAAGAGTAGACCGCGCAGCAGGAGCCGGAGCAGGGGGAGGAGCCGCAGCAGGGGGAGGAGTCGGAGCAGGGGAAGGAGCCGCAGCAGGGTAAGAAGTCGGACCAGGGGAAGGAGTCGGAGCCgcagtggcagcagcagcagtagctgtagcagcagcagcagaaacagCAAGGGAGATAAGGAAGATTTTAGAGAGCTTGAGAGGGCACGTCGACGTAAAGAACTGGAGGACATGCTGACGATGCCCACTAAATCCATCTTGAAAAAGAGAGTTGACTCCTCTGAAACTGATTCTCCCATGATCGGACAGAGTACTGACTCTCCACAAGGGAATTCAGGCAGTGGTCTGTCAAAGGATGCGGAACAGTTATTATGTGCAGTGACTAAAAACATGGACCCAGACTTACTGACATCAGTGTTGGCTCGAAATTCTAATGCCAGTGCACTTGAAGAGCTCATAAGCAAACTACAGCCTACCAAAGAGAGTGGGCATGGGTTCCCTCTCCCTCATGAAAGTAGCAGCCAAGAGAATTCAGACCTCACCCAGCTTCTCAGTGTGATGGCAGAGGCAGTAGCCCAACCaccagacaaaaagaaaagctttGTAGATATTGAAGATGAAGAGAAGTTCCTATACGgggatgaagaagaggaagacaaATTTCCAGCAAAAGAAATGCCTAAATCTGGACAATGTAGCTTACTGGATGTCTATGCGAAAACTGGACCTGATGCGCTGTATCATGAACCAAAGACTGGAGTAGTACATGAGCCACATAGGAAAGAATATGGACATTCTTACAGTCATGGACATCCTGAAGAAGATGAAAGTCAAATAACTAAACAGAACAAATATTGGGATAAGCACTATTCTTCCGCATTACCTGTGCAGCATCTTGATGAGGAACCTCAGAGTAACCCACCAGTAACTGAGTCTCATGATGCTCAAGTTAGGGCAGAAGTGGAGGAATACGAGAAGATACAAGACCTCCTCAAGACTATTGGCCTTGACCTGGGTGTAGCTGAGATCAGCAAGATGGCTGCCAGGACGCAAGAACGCCTCCAAGGTAAGAATCCTGGGAAGTCATCTGTCAAAAGACACCAGTCTGACCAGAGACGCAGGAGCCACAGCAGGAGTTCCAGTAGCAATAGCAGGAGTAGGAGTACCAGCAGGGGAAGCAGCTGCAGCAGAAGAAGCAGTCGCAGTCGGAGCAGCAGCTATGAGCACACCTCAAGTCATGGCAGGAAGAAGTCTGTTCCTCTTGAAAGACATTCATCGCGATCTGATAGTCAGAGTCAGAGGGAGGTTCGGCCTGGCACTAAAGCTGAAGAGAACCTGTGGACTAACACAGGTCCCCTGCCTCCTGAAGTTGTGAATCCTGGAACAAATAATTTCCCAGCTCCCTCTGCCCATCAGATGCCTCCCTATCCACAGCCACACACACGTGGACTTATGCCTCCCAACTACCCTCCCCCTGGCTATGATCCTTATGGGAACTACATGCCATATATGCCCCAAGGCTGGCCCATGTACCCGCCCCCTAGTATGCCGATGCTGCCACAAACTCCCATGGATGACTACAGTTCCCCTGCCATAGATCGACCCTTCCTGAAAGTAATCAATACAGGGGCAAATGAAGCTCAAGGGATAGATAAAAAAGGCTCAAAGGTAGACCCGTTACAGAGCATGACAATTGCATGCAGTGGAAACCAGAGGAGGGTAATTGAAGAAAAGAATAATGCCAAACAAAAGCAGAAGGTAACTGAAGAGCTTGAGAAGCTGATGAAGGACAGAGATTCccgaatgaagaaaaaagagagtctaATAAAAGAATTGGAGACACTGCGAAAGCAGCAAGGGGAGCTCCTAAGGAAAAAGCGAAGGGAGAAAGATGGTCACAAGGATCCCATACTTATGGAGCTTGGCCGTCTTCAAGAGGATGTGATGGCCCAGATATCCGATCTGCGCACTGAACATGAGGCAGCAGAGAAGAAGTATGAAGAACTAGTGAAGGTGGCAACAATCCTGGGGCTGGACCACAAAAACCTTAGGAGCTCTGGGGAACATGATCATGCCCCTTCTCATAGCAACTCTAAAGAACCCAGAAGCCCAGAGAAATCGAAATCAGCCTCCATCACATCCACCGCTCAGGGTACCAAGTCATCGACGCCAGGAACCAGCACCAGATCGGATTCATTAGCTGAGATATTTGAGTACTATGATGCAGGAAACCACTGGTGCAAAAACTGCAACATTACTAGTGGTTCCATGTTTGATTTTTTCACACACTTGCACAGCAAAATGCACAGAAAGACTATAGATCCCTACGTCAGACCTTGGGCATCAAATTCCGAGCGTGAAAAGAAACACCCTACAGGCGAACTGATTTCTAAACCAGCAAAAGGCTCTGAATTTGTGTTACCTGTGAGGGGATTTTTCTGCCAGTTGTGTAAAGAGTTTTTTGGTGATCCTATTTGTGCAGAGGCCCATGTTATATGCCATGCACACAATGAGAAGTATAagAAACAAATGTACGAGAACCCTCTTTATGAACAAAGGAGGAACCTGGATCGCCAAGCTGGCATGGAGAGCGAAAAAAAGCAGACTGAGCACAAACGAAAGCGTGAAGATGATGACTCCCAGGATGAGCAGAAAAACTCCAAGTCCAGCAAAGATCAAGTGAAAAAGCCCAAATGCAAGAATGAAGAAGAGGATAGACCCAAATACATCAAGGAAGAGgaacaaaaagtaaaacatgtCAAAGAGGAAGAGAATAAACCTAAATGTAAGAAAGAGGAGGCTGAGCGGACCAAATgtagaagagaagaggaagagaggacTAGGTATACAAAGGAAGAAGGGGAGAGAAACAAGTTTagaaaggaagaggaagagaggtaCAGACAGAAGAAAGCGGATGATGAGAGGTACAAGTATGAAGAAGACAAATATAGATACAAAGAAGAAAATCGGTACAAGTACAGAGAAGATAATGAGAAGTATAGGTACAGGAAGGAAGATGAAAAATCTAGGTATCGGAAAGAGGATGACAAGAAATACAAATATGGTCATGAAACTGAGGAAGACAGGAGACCAAAATACAGGGAGGAAGAGTGTTCAAGGTTGCCAAAATCAAAATGGGAGGaagaagatgaggaggaggaagagaggccCAAATATGGGAAAAGGGAGGATAAAAAGCAACACCCAAAAGGAGGCCgcaaagatgagagagagaagtctTCTTTGAAAGATGCTAAGACTGATCCCGAGAAGCCTAGTGAGCTCCCTAAGGTTCTTTGTGGGCCAAGTCCAGCCATGCTTGCAAAACTTCGCAAAAAGAACGAGGAGGCCACTTCACGTCCTGCCTTTGGAAAATTCACTTGGAAAAAGCCTGAAAAGACTGCACTGGAGAAGGAAGCAGAGAAAATTGCAGAACAATTTATGAAGGAAGATGAGGAGAGTGTTGTAGCTGCAGCAGCAAGTAAAGACACTGAGGATCAGGATGCTTTTGCCAAGTCTGTGGCTGCTGCTAAGAGTATTGCTATCAAACTGTCAGGTAAAACAGCCATTGCCCCTTCCGAAGAATGGGTAGCCTATAACCAGATTAAAAATCGTCCTAATTTGCCCACTCCTTCTAATATTCTGAGAAAGTCCAATGTTGGGCTCCAGAACAAGCCAGTTTCTGCTGACATACCCCCCTTAGCTGTACCAACCATGGATGCAAGCAGCAAATCTTCTGAAACTGTGATAAAAAACCAGGCAGAGAATGAAGACGTTCTGTCAACTGATCTAATCTCGAAGGCATTTGGAGGTGAGGAGGTGCAATTGGAAATTCCAGGTGATAACTCATCCAGTCTTATATCTGCTTCTGTCTCCATACCAACTACTTCAACTGTAACAACTCCATCATCCACAGTGCAGGAGGTGGAGGCTGTTGAGGTAAAAGCTCCTACTGAATGTATGATTACTCTTGAGACTGATGTGGCTGCTCCTGGAGTACCTGAGGAGGAACACAAACTAACAGTCATGGTCCGTCCTCCTCCTCAAATTCAGACCCTCAGTAGTTACTCTTCTTCAAAAAAAGACAAGCCAAAAACAAGTCTGGCTGCAGCAAAAGCAAAAGACttgtttgacattttttatgGCGGCAGCACTATGGCTAGCTGCAGTGGTTCTAGTGCTGGCAATAAGATTGGCTGTAAACAAGACTCTAAAGCTGTTTCAGGAAGATTGGTGACCACTTTAGATAAAGAATCAACAAAGGAGCAGGAtccaaacactgaacacttACCTGAGGTCTCCAGCTTGAAGTGTGAGGAGCCATTTGAGGACAGAGGAGCACAGTCTGAACCACCAACTTTTGATCTTGAAGTAGAACCACTTGTGGACTCAAAAACTGAAGAGCATGGTGGAAGTATGGAAATGGCAACAGTTGATTGCAAGAATGAAGCAGATTCTCTGGACTGTTTAGCCAATTCAGAAATCATGGAGAACATTGAGATGATGGGAACAAATGATAACCAAAATCCTCTGGACTCTGAAGAGGCAATGACTCTTTCGTTCTCCCCACCACCAGGTTCTTTTACAGAGCAACTGAACTTGGACACATTTGAGTTCAGTTTTGACTCTTTGTAAAGAAGCTCCATCCAGTAGGTGTAGGGATGTGCATGAAACCTATGAATGTTTCAGTAACATTGATCTGaaaactttttatttgtattatttggtTGAGATGTTTCATGTATCTTCTTAAACTTTTTGGCAGGTAATGCCAGTGAAATGATGGACTGACAAGCACTCATTCTGAAGGAAAGGAGATTCCACTGAAAGAATGAGCATTTTCTCCACAAGTAATGAATCATTAGCATATGTAAAATGTTGCACAGTTTTTGTTAAAAGTACAGGGTTTTGAACTCCCTGCTTTTTCTTGCTTTGTTTGCAGCTGATACagttcctttaaaaaaagaaaggtaaTGTAGACcatcattttatataatctGTTTGAGAGTGATTTAAGTTCAAGTCTAAATCCATTAATCCTTCCACTTAAGTAAATCAAAGATATTTTAATACAGGAACCAGAGAGATCCAAGgtcagaagagaaaaagaattgGTGTGGAGCTCACGCTACAAGGAcaaaaatgtcttgaaatacATTTGTACTTTTGAGTCCAGCATAAGCTTTTCTCTTAACAGCTCTTGTGAGAACTGATACAAATTTGAGATTATGGTCCTGTACCCTGTTAGTTGAAATACTGTACACTGTTCTATATTACTATTGGTTGTTCTGTAGTTTCTGGTGTATAAGGTCTAGTTCAAATAAATTTCAGTGACCACATTTTTGTGTATTAATCATATCTAGATATTAATAGTAATTGCTACTCATTAGTGGAAATATATCTGTGATATATTTTAGATGCTGTACTTGagtaatgtttcttttttatcatGTCAGTGTAAGTATATGTGCCTGTGTATAGCTTTTTCTGTCCACTGCTTTGAACTGTTTTTTCAGTTGTGTCTCCTTGTTCCCTAGAATGTATAGCTGTACATCTTATTTGCTATCATTTATTACAACAGTCTAGGAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU60643 lncRNA downstream 31083 22647350 ~ 22743272 (-) True G51289
TU60626 lncRNA downstream 166318 22605547 ~ 22608037 (-) True G51276
TU60484 lncRNA downstream 207828 22565799 ~ 22566527 (-) False LOC113541574
TU60485 lncRNA downstream 227865 22544227 ~ 22546490 (-) True G51169
XR_004577858.1 lncRNA downstream 597024 22165739 ~ 22177331 (-) True LOC117596869
TU60768 lncRNA upstream 101255 22890059 ~ 22890274 (-) True G51389
TU60769 lncRNA upstream 101493 22890297 ~ 22890507 (-) True G51390
TU60844 lncRNA upstream 281539 23070343 ~ 23070721 (-) True G51462
XR_003403951.2 lncRNA upstream 427044 23215848 ~ 23218757 (-) True LOC113539667
TU60916 lncRNA upstream 471392 23260196 ~ 23266336 (-) True G51523
XM_026937354.2 mRNA downstream 2398 22747946 ~ 22771957 (-) False ppp2r5d
XM_026937355.2 mRNA downstream 2444 22746734 ~ 22771911 (-) True ppp2r5d
XM_034303136.1 mRNA downstream 31880 22738208 ~ 22742475 (-) True LOC113540936
XM_026937502.2 mRNA downstream 45048 22726906 ~ 22729307 (-) True LOC113540869
XM_026937339.2 mRNA downstream 85050 22626634 ~ 22689305 (-) True tjap1
XM_034302693.1 mRNA upstream 2379 22791183 ~ 22814948 (-) False si:dkeyp-121d4.3
XM_034302692.1 mRNA upstream 2842 22791646 ~ 22814947 (-) False si:dkeyp-121d4.3
XM_026937266.2 mRNA upstream 2842 22791646 ~ 22814947 (-) False si:dkeyp-121d4.3
XM_026937258.2 mRNA upstream 2842 22791646 ~ 22814947 (-) True si:dkeyp-121d4.3
XM_034303142.1 mRNA upstream 37426 22826230 ~ 22866443 (-) False LOC113540882
TU60345 other downstream 672972 22035285 ~ 22101383 (-) False LOC113540944
TU60082 other downstream 824166 21949855 ~ 21950189 (-) True G50837
trnai-uau other downstream 878078 21896184 ~ 21896277 (-) True trnai-uau
TU59887 other downstream 1160088 21611774 ~ 21614267 (-) False plekhh2
TU58946 other downstream 2404926 20357988 ~ 20369429 (-) False gng2
TU60979 other upstream 659104 23447908 ~ 23454217 (-) True G51576
XR_004577819.1 other upstream 1228460 24017264 ~ 24040100 (-) False mlh1
XR_003404244.2 other upstream 1664315 24453119 ~ 24651847 (-) False lyst
XR_004577838.1 other upstream 1682899 24471703 ~ 24651847 (-) False lyst
XR_004577835.1 other upstream 1893442 24682246 ~ 24735887 (-) False herc4

Expression Profile