RNA id: XM_026937324.2


Basic Information

Item Value
RNA id XM_026937324.2
length 3291
RNA type mRNA
GC content 0.46
exon number 11
gene id dld
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 22981602 ~ 22986797 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CGGACTGGGACAtcagacactcacacactcacacactccttctctctctccaatgGAATCACGAGCGTCGGAGTAAACGCGTTTGGAAAGCCTACAAATCAGCGCAAAGTAAACAGTCGCGACCTGCTGCCTCTGCTGCAGCTTTGTGTGGAAAGTGCAAGTGATCCGGACGCACTGACAACTTGGAGTtatcactctttttttctgtgactTTTGGGATTtacttgtctgttttttttttgttttttgttttttgcaagaCATGAcctgtagaagaagaagataaagCGAATTAAAGAGTGCATCAACCCTCTGGCTGAAGATTTCACCTCTTCAGCGTGTGGTAGTTGTAGGTTACATGACTTCTTGAGCGAGCTCACCCGTGGACGTGTAACATCTCCCTGAAGATCTTCACCACCATGGGGCGACTCATGATAGCTGCCATCCTTTGTGCCATGCTAAACCAGattttATGCTCTGGGGTTTTTGAGTTGAAGTTGCAAGAGTTTCTCAATAAGAAAGGAATAACAGCCAACTCTAACTGCTGTAAAGGAGGATCCTCTTCAGCCATCCAGCAGTGCGAATGCAAAACCTTTTTCAGGATTTGCCTGAAGCATTACCAGGCTAACGTGTCCCCAGAGCCTCCGTGCACGTATGGAGGAATTACTACTCCAGTTCTCGGATCAAACTCATTTCAAGTTCCTGAAACTCTTTCAGACAGCACCTTCACCAACCCTGTTCGCTTCCCTTTTGGATTTACGTGGCCGGGCACGTTTTCACTAATTATTGAGGCACTGCATACAGAGTCTACTGAGGATTTATCAACCGAAAACCCAGAACGTCTGATCAGTCGCATGACCACCCAGAGGCACCTGACGGTCGGAGAAGAATGGTCCCAGGATCTCCAGGTGGCTGGGAGAACCGAGCTGAAGTACGCCTACAGATTCGTGTGTGATGAGCATTACTATGGAGACGGCTGCTCGGTCTTCTGCCGGCCGCGAGACGACGCCTTCGGCCACTTCACGTGCGGAGAGCGCGGAGAGATCATCTGTAACTCCGGGTGGAAAGGCCAGTACTGCACAGAGCCAATCTGTCTCCCGGGGTGTGATGAGGAGCATGGATTTTGTGACAAACCTGGTGAATGCAAATGCAGAGTGGGCTTCAGTGGGAAATACTGTGATGACTGTATCCGCTACCCTGGTTGCTTACATGGAACCTGCCAGCAACCATGGCAGTGCAACTGTCAAGAGGGCTGGGGTGGCCTCTTCTGCAACCAAGATCTTAATTACTGCACACACCACAAACCATGCCAGAATGGAGCCACTTGCACTAACACTGGTCAAGGCAGCTACACATGCAGCTGCAAGCCTGGTTTCACCGGGGCGAGCTGTGAGATTGAGGTTAACGAGTGCTCTGACAGCCCCTGCAGAAATGGAGGAAGCTGCACTGATCTTGAGAACACATATAGCTGCACCTGCCCTCCTGGCTTCTATGGAAGAAACTGTGAGCTGAGTGCCATGACTTGTGCTGATGGCCCCTGCCTCAATGGTGGACGGTGTGCTGACAATCCTGATGGAGGATACTTCTGTCAGTGTCTCATGGGCTACGCCGGCTTTAATTGTGAAAAGAAGATTGATCATTGTAGTTCAAATCCATGCTCAAATGGTGCCCAGTGTCTAGACCTTGTGGACTCCTATCTCTGCCAGTGTCCAGAGGGTTTTACAGGCACACACTGTGATGACAATATTGATGAGTGTGCTGCCTACCCCTGTCAGAATGGTGGAACATGTCAAGACGGAGTCAACGACTACACCTGTACCTGCCCACCTGGATACACTGGCAAGAACTGCAGCCTGCCTGTCAATAAGTGTGTACATAACCCTTGCCACAATGGAGCTACTTGTTATGAAAGGGATAACCGCTATGTGTGTGCCTGCATTCCTGGGTACGGAGGACGTAACTGCCAATTCTTGCTCCCTGAAAACCCTCAAGGACAGCCTGTTGTAGAGGGAGCCGATAAAAGGTACTCTGACGATGAGGAGGACAACGTATTTCCATGGACAGCAGTCTGTGCTGGGATTATTTTGGTGCTTTTGCTCCTGCTTGGGTGCGCTCTTCTGGTCGTGTACATCCGCATAAAACTGCAGCAGAGAAGCCAGCAAGCCGACAGTCACATTGAAAGTGAGACCATGAACAACTTGACCAACAACTGCAGTCGAGAGAAGGACCTGAGCGTCAGCATTATAGGCACTACGCAGGTGAAGAATACCAACAAGAAGGTGGACTTTCAGAGTGACGCCACAGGTGTAGAAAAGAAAGGTTACAAGTCTCGCTATTCATTAGTGGATTACAATCTTGTTCATGAGCTTAAGCAGGAGGACTTCGGGAAAGAGGACTTGGAGAAAAACGATGTAAGATGCGAAGCTCTTGACTCTGacacagaagaaaaacacagaaaacatttaagaaGTGAGACATCAGAGAAAAGTCCAGAAGCTGCATGCAAAGACACAAAGTACCAGTCTGTCTTTGTAATATCAGATGAAAAGGATGAATGTATTATTGCAACTGAGGTATAATGCCACAACAGAGCTGTAGCTCGTCTTGCTCTACAGGAGGTTTTACTCCAGTATATGCTGCTCAAACCAGAGGGAAGGTTTCCTTCTTATGACTGCTGCTGTGGGTCTTATGTTCATGGTGAAGTTCAGAATGAGCTGGTTCTCAACTGAAGTAAGCACAGTGACTGCAGAAAAAGGATGTTGAGCCATACTGGCTCGCACTCTCAAAGTTTATTTCCCAGGAATGTGTCAGATGGACTTGTTGCACTTCCtgtagggatttttttttacctcattgCACTATGGAGGgttgcttttataaaaaaaaatgtatttaacattcAAACATAATTACTGCATATAAGTATGCACTGACTGCAGTGTCTATCTCTGACCCGTTACACAGGTCAGGAGAGGAAAAACACCGCCAACAAAACTGTTCAGTTACTGATATGATTTTtaagttgtaatatttttttatttaaatgctatttGTGATTAATTTGCTTTGGGGTTTTTGTGAAGTTAACGCAGATataatttaatctttttctcattttgcaaatttgtatattgtatataaggCACTTCGGGTCATAGTGACTGTTTTCCAACAGTAATGTATTTAATTGTGTTGTTAAAACTTACAGGAATTGTTTTATAAGTGTTGTTCATGAAGAAAATCACCttaatatttttccaaataaatcCTGTATGAAATATTTCCAAATGA

Function

GO:

id name namespace
GO:0021523 somatic motor neuron differentiation biological_process
GO:0007219 Notch signaling pathway biological_process
GO:0001756 somitogenesis biological_process
GO:0003140 determination of left/right asymmetry in lateral mesoderm biological_process
GO:0046331 lateral inhibition biological_process
GO:0048546 digestive tract morphogenesis biological_process
GO:0060218 hematopoietic stem cell differentiation biological_process
GO:0048471 perinuclear region of cytoplasm cellular_component
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0030165 PDZ domain binding molecular_function

KEGG:

id description
K06051 DLL; delta

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU60728 lncRNA upstream 22982 22958400 ~ 22958620 (+) True G51358
TU60716 lncRNA upstream 68065 22911144 ~ 22913537 (+) False LOC113540861
TU60717 lncRNA upstream 68065 22911144 ~ 22913537 (+) True LOC113540861
XR_004577901.1 lncRNA upstream 244935 22729322 ~ 22736667 (+) False LOC117596907
TU60802 lncRNA downstream 83524 23070321 ~ 23070713 (+) True G51422
TU60805 lncRNA downstream 86159 23072956 ~ 23145137 (+) True G51425
TU60806 lncRNA downstream 87933 23074730 ~ 23076471 (+) True G51426
TU60889 lncRNA downstream 220318 23207115 ~ 23275341 (+) True G51501
TU60900 lncRNA downstream 291126 23277923 ~ 23361488 (+) True G51511
XM_034302932.1 mRNA upstream 54052 22924521 ~ 22927550 (+) True si:zfos-1056e6.1
XM_034301913.1 mRNA upstream 68050 22911706 ~ 22913552 (+) False LOC113540861
XM_026937432.2 mRNA upstream 90733 22870890 ~ 22890869 (+) True LOC113540824
XM_026937440.2 mRNA upstream 93890 22871201 ~ 22887712 (+) False LOC113540824
XM_026937459.2 mRNA upstream 235798 22742727 ~ 22745804 (+) True mea1
XM_026941717.2 mRNA downstream 65431 23052228 ~ 23069644 (+) True actr2b
XM_026941706.2 mRNA downstream 84511 23071308 ~ 23101134 (+) True spred2b
XM_026935614.2 mRNA downstream 233324 23220121 ~ 23276316 (+) True meis1b
XM_026935610.2 mRNA downstream 233328 23220125 ~ 23275640 (+) False meis1b
XM_026939527.2 mRNA downstream 441220 23428017 ~ 23450991 (+) True si:dkey-78p8.1
TU60615 other upstream 195097 22784328 ~ 22786505 (+) True G51271
TU60121 other upstream 957791 22021407 ~ 22023811 (+) True wu:fj16a03
trnae-cuc_10 other upstream 1976083 21005450 ~ 21005519 (+) True trnae-cuc_10
TU59013 other upstream 2406123 20574973 ~ 20575479 (+) True G49862
XR_003403775.2 other upstream 3625504 19341350 ~ 19356098 (+) False sfxn5a
XR_003404579.1 other downstream 127388 23114185 ~ 23115039 (+) True LOC113545030
TU60962 other downstream 467631 23454428 ~ 23455549 (+) True G51562
TU61166 other downstream 710235 23697032 ~ 23697294 (+) True G51749
TU61214 other downstream 806883 23793680 ~ 23805495 (+) False slc29a3
TU61306 other downstream 1068444 24055241 ~ 24057887 (+) True LOC113540163

Expression Profile