RNA id: XM_034302888.1


Basic Information

Item Value
RNA id XM_034302888.1
length 6587
RNA type mRNA
GC content 0.42
exon number 10
gene id tjap1
representative False

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 22626634 ~ 22689305 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGTCAACAAGCTCATTCACTGGTCATCAATAGCCTGGGAGTTCACATGCCAAGAGGAGAAGGGCAAGTGGGAGGAAGAAGAGACCGAGAGGGATTGAGTTTCCCTGGTTACCGGAGGAACACGTTCACTGCGATGACTGGAGCTTGAGaATGGCCTGGGCCTGACTACAAGTGAATGAGGACATCTCAGAAACACCACCACACTTTTTGGGATTAACGGTCAGTGTGTGGATAGAGACTGAGCTCCTAGAATGACGAGTGCAGCCCCAGCCCGCAAGCCGTATCGCAAGGCACCTCCTCAGCACCGTGAAACCCGCCACAACCAGCCCATATTCCGAGAGGACCTTAGTGGGAGCCCCACTGCAACCTGTGACTCTCCGGCTCCTGCCCAGCATGCCCCCAGTCAGGAGTCATTATCAGATGCTGAAAAAATCAAGATCTTAGAACAGCAGAATGAAGACCTGCGCCGCCATCTCACACATACCACCCACAAAATGGAGGCAATGGAGGCGGAGTTTGAGAGTCGTCGGCACTACATGCAGACAGAGATGGGCCGAACACGAGACGATCTGGAGAAGATGAAAGACAAGTTTCGAAGACTGCAGAACAGCTACACAGCCTCACAGAGAGCCAACCAGGATTTGGAAGAGAAGCTTCATGCCTTGCTCCGGAAAGTGGAAAGAGACAAGAAGACCATGGATCAAGAGATAGTGGAGCTCACCAACAAGCTTGTGGATGCTAAGAACACTATTGACAAGCTGGAGGAACTGAATgaACGCTATCGGCAGGACTGCAATTTGGCTGTGCAGCTGTTGAAGTGCAACAAGTCCCATTTCCGGAACCACAAGTTTGCAGACTTGCCATATGAACTACAGGAGATGGTGAATAAGCACATGAAGAGCAGTCTGCCTGACAAGACCCAGAGCCCTCAAGGAGCCCATGGGCAGGACCCAGACACACTGAGTTTGACACCAGCTGATGTGGTGCCCACCTCTGTCATTGCCCGGGTACTTGAGAAACCTGAACCACTTGTTCTCAACTCTGCTCAGTCCAGCAGCAGTGGACGGCCAGTGGCTGAGGATGTGTTTGTCCATGTGGATATGACTGGATCCCAGAATGAAAGTGCTGGCCGAGAAAATGGGGGTCCTGGACAGACTAGGCTTAGCACCTGTACTGGACCTGATCAGTCACATCTTAATGGAGTGTTCCGTAGTCCAGATGGTCAGTCAGCTGACAGTGGGGCAGCACCCTCCTTTGAGAAGCTAAATCCTTACCCTACACCACCTCCTCCACATCCGCTCTACCCTGGCCGCAAAGTGATTGAGTTCTCCTCTGATGATAAGGTAAAGATCCCTAAGAACAGCCCACTGCCTAACTGCACATATGCCACACGCCAGGCCATATCCCTTAGCCTGGTACAAAATGAGGAGGAGGCTGGAGAACGGCAACGTACTGTCCCCAACAGCCCTGCAGTGTCTGATGGAGGTTGGCGTTCTGGGACTTCCTCATCTTCAGGCGGAGGGCATGCATCACAACCACGAACGCCTCAGCAGAGTGATTTCACTGACCCTTTGTCTAGCCAGTCAAGTCCCTTCAGCAGCCCACCACAGCCACCGAGTGCCTTTGCCAGCTCAGGTAGCTCTGAGGAGGACTTGCTCACCAACTGGCAGAGAatgtttgtggagaagattgCACCATCCTCAGAAGGCACCCTGGTTAACCGCACCTCCTTTAGCAGTGAGACAGTGAAGGAACTCCAAATGAGTCGCAGCAGCAAGTCCGGTAGAGGAGCTTCAGACCGAGGGATCCTGCGTGGAGCCTACTCCGATGGAGAAGAGGGCTCCTCAACTCAAAGCTGGACGGCCAGCAGAGAGTCCAGCCTGGATACTGATACAAGCAGCATCGCAGACCTACGCACCAAAAGGGGTCAGTATGGTGCTACCTTTTCACAAGAGGAGAGTGAGCAATTGCTGATGGCTCTTGACAATGATGATGGTGCTAGTGGTGACACAATGGTCATGGTGGAGTCCAGCCCAGCCTCTGCAAAGCAGCCAGAGTTTGCTGAAGATGGTGGTTCTGTAGGCAGCCCAGCCGAAGAGCGAGACGTCCTTCCACAGGACTTTCCCATCATCAGTCCCCGGGTCCTTGCCGGCTTGGAGGATTACACAGAAAAGCCTCCCTCTCACCGCCACCAGAGTGGCTCCACCCGGCCTCAGAAGAGCCCCAAAAGGATGGGGGTTCATCACCTGCACAGGAAGGACAGTCTTACCAGGGCTCAAGAGCACGGAAACCTGCTGGACTGAGAAAGTGGCTAGCCCCTTGCTCCTTACTTCACCTACAGTGCTCTTCTGCTTGTTAGATCACAAGTCTTACCAGGCCATAAAGGGAAGCAGGAATCACATTGGTGATTGATCAGCTAATGCCCAAGCTGCTTTCTTTTATGGGTTATTACTGTAACTCTTGAGCCACTTCTCAGAAGCAAGAAGCTAGTTGTGGTATTTACAGTACAGATTAAGGGTGGTAATCATACCTTTTAAGAAGTCTGATGTACTTCAGTTATCCTTTAAGAATGTGAGAGTATGTAAGAAGTTCATTTTTCCATGCTCCAACATCTTCTGGACATCTTCAAGCTGTGGTGTAAATTATGAGAAGAATACAGGATATAGCCATATAAAGACACCTCTGTATTTGGCCAATGTATTGTAATGGGGGACATCCAGATGAAACAGCACTTTCAACTTGTTGCCGTAAGGTACTAGAATACCACAGAAACTGGAAGCAAAGACCCCTTTTTTTGTTGAAGGGTTTCAAAGTGAGAGCCGTGTACTTCTAAAGATTAAAGAATGAGATGGTGCTCCAGACTGAGATCCAGATACTGTTGTATGGTTTAGATTATGCAGGTTTCATGGGATTCAGTGGATTTTAATCTTTCAGTGCCTAACCCTTTTTAATGACTAATGTTTTCCCATCACCCTTTAAAAAGTATTGCTCCTTATGTCTACTTTCAGTTCACGTTTAAGAATCCCATTCCACTGCACATCTATGGCAAACACCTCTTTTCATCGAGCTGCCACAGTAATTTTTGATTGATTGAAACaaatttttttgaatttttctttACTATGGAAATATTTAGATTTCAACAAATATTctgattaatataaattatatccGTGAGTTTATCCATGATGTTTTAGTTCCTAAGGTCCATAAAAGGTTTTCTTGTTAACTCCCACTTCCCAATGATAATTTGCGGAACAGACTTGGATGTCTCCTACATCTTTATTTTAGCTGCTGTGGAAAAGTATCCCATAGCTTCAATGAATGCCACTATGATTATTTAGgtgttttgaaatatatttagatAGAAAATGTAGACCTAAATCTGAGCTTTGGTTGTCTACCTTTTCCCTTTGAAGAATGTATGGTTTTATTCAGCATTCatcttatttcatttgtttcttcaGAATTTGGTATGGGCAagaaaaacattacaaactcaCAGTGAAAACAAGACTGATATTTATTGGTGTGCAATCACATAGGTAGTAAAGTGTTTTCATAGCTTTTGCCAGCAGTGAACTTTTACTCAATGTAATTTACCCAACACAATGGCTGTCAgaatatttttcactgtttaaatACCATTAAAATTTTCATGATATTTTCGTCATCAAAGgcaggccaaaaaaaaaaaatctacatttgaATGTCCAGGAGGCCGAGGTTTCATTTTTAGTCAACTAACACCTTGTCACTTGATGTGGGATAAGGGCTCTGAATAGATGCATGTAATTCATGCTATACCATATTTTCCACATATGTTTAAGATATTAGATATGAAACTTTAAatcaatattaaacattaacaacTTGTGTGTCCCAACAatgatattcaaatattagtattaatataaGTAGTTCGACATTTTAACATTGGAGTACGCTGGAACGTAAAAATGCGCAAAAGATCtcctttttttctataataaaatgGCAATCGACACAtcaatctggaatgattgacgtTTGCGTTTGCGTTTCTTGAACTCTCTGGGAGTtcattaaagtgaaataaaatctatcattGTGTTTGAGTTAGCTATCTTTAAATTAGTATATAATTAACATAAGTTAACAGATGTTTTTTGAGAACAGGTTCTCAAGAAACTGGGAAGTGAGCCTCAGTGGCGAAAAAGTTAAAATTCGTCTGTATTGGAGTAAGAACTTTTCTGTTGGAATCATTGTGCACTACGTAGGTTCTACAGTGTCATCATTTTATGCCCAATGTAGTtatcatatacagtcaggtatgtaaatatttcgacattgacaaagttattgttattttaactgcctaccacagtatattgtagttgaaattaaataatataggtataatttgagtgtatttacatccaaattgcGTGTAGAAATTACAACACTTTTCATATGTGGGTcactttttaagggaccaaagtAACTGGAGagttggctgctcagctgttccatggccaggtctGTTATTCCCTTATTATTTCACTTAGAggtaagcagataaaaagtcTAGAGGTGATTTCAAGTTGAATCTGTGGCTGAGgcccaaagagctgtcactgccagtgaagcaagccatccaTAGGCTGAACAATTAAAACAAAcccattagagagagagaacaaaaacattaggtgtggccagatcaactatttggtacatttttaaaaagaaagaatccattggtgagctcaggaacaccaaaaggcccagaAGACCATGGaaaataatgacagaaaataatGACAGAAGGTGTGGTAGATGACAGAAAAATTCTTTCCCTGTCAAAAGTCAGCAATCAAGAGAAGACGTCAGCAGAGCAAATACAGTGGGTTTACCACAAAATGTAAACCACTGATAAGCCCATACAGATCTGGAACAGACAAAGACTTGctccagaatgatgggaagagaagagtgtgGAGAAGGGAAGAACTGCTCATGATTtaaagcataccacctcatcttatggtgCAACTgattcccttgtatttattgatgatggactGCTGAAAAAAGCAGAAGGATGAATTCTggggtgtatagggctatattatctgtTCAGATACGAAACGCTTTGGATgtcgcttcacagtgcagatggacaatgacgcGAAGCATACTTCGAAAGCAGCCCGAGACTTTTtaaagaagaagcctttatttgtcacatatgcATTGCAGTACAGTGAAACACTTTTcgtcacatatcccagcttgttatcTGACTTGGATGTATATACCTTTTAATTAAAGCCGAAAGTCTGCACTTTAACTCGTATTCATTATGTAATTTCAACtgcaatatactgtggtagacagctaaaataataactttgtcaGTGCCCAAATATTTATCTGCTTCACTGTATATCAAACAGTTTACCATTTGGTAACATTTAGTAAGCCTTTACTAAgaggtttaaatttaaaaaaaaaaaaaaaaaaaaggaaaagtattTCTTTGTGATACGATGTGATACTACAcctattttataatgaatatttgaAGGCGTTTTCAAGGAAGTGACAGCTGAAAACAGTACTATGCATGCAGCAGTTTCACCATACTTCCAAAAACTGAATTATACTTTACGTCAACTGAATTATACTTTATTCAACCTGGAGGTGTGGTGCAGGTGAGatggaaaataccaaaaaataaatatttgtatgaCCGTTTCAGACCTGCCAAACTTTACACATTTTATGTAGGAGGAAAATATGCCCTGAGAGTagtttccctttttttcctaaaaaaaaaaatgtcagattgACCAATTgacatgaatctggaatgattgacagttgcacaggtgttttgaGTTCTCTGCTTGAAATGTCCGCTCACATGGCGCTCTTGCTTTCTGTCAGggtaaataatttattaccaTGACTTTTATTCTTCAGTAATGTGATAAACTATCAATCTGTGTCTGACTTAACTatcattacaaaaatatatagttaacatcagttaagtatatatatatcaaaaacCGGGAAGTGGGgctcatggggaaaaaatttaaatgtctgCTTTAGGTATTTGGACTGTCAGGTAtaatgacactgacacacatttaaatacaagGTGTTTCAGGAGACAGCCCCTTCAGTACTTTGTTTCACAAACCATTAGCTCTCCAAGTTTGGGTAATTCTGGTATTAGGTAGGATTAATGTAAGCAATTACTTGCTTGCAGTAgcaaatcaaattttatttaataataattaataattataataattaataattattatgttgTATCCATCAAAAAGATAAAGATGATTTTCCTTTACTTGAGGCAGTGAAATTTGTTACTTTCAAGCCTTCAGGTTATTAAGATGATCCAGATTTTCTGACTTGTGGtggtattattaatattttcaaaTGTAGATCCTGGGTTTCTCCACGTTTCTCTTCTATACTTCATGCAGTGTTGAACATTCTGagcactcattcactcattgtCAATCTGGACACACCCTGGTCATGCAGTATCTAAATCAAATTAAGTGTCATACatgg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU60626 lncRNA downstream 18597 22605547 ~ 22608037 (-) True G51276
TU60484 lncRNA downstream 60107 22565799 ~ 22566527 (-) False LOC113541574
TU60485 lncRNA downstream 80144 22544227 ~ 22546490 (-) True G51169
XR_004577860.1 lncRNA downstream 449303 22165739 ~ 22177331 (-) False LOC117596869
TU60768 lncRNA upstream 217095 22890059 ~ 22890274 (-) True G51389
TU60769 lncRNA upstream 217333 22890297 ~ 22890507 (-) True G51390
TU60844 lncRNA upstream 397379 23070343 ~ 23070721 (-) True G51462
XR_003403951.2 lncRNA upstream 542884 23215848 ~ 23218757 (-) True LOC113539667
TU60916 lncRNA upstream 587232 23260196 ~ 23266336 (-) True G51523
XM_026936487.2 mRNA downstream 28435 22589052 ~ 22598199 (-) True ncoa4
XM_034302766.1 mRNA downstream 29538 22589052 ~ 22597096 (-) False ncoa4
XM_034302780.1 mRNA downstream 54766 22565771 ~ 22571868 (-) False LOC113541574
XM_026937502.2 mRNA upstream 53942 22726906 ~ 22729307 (-) True LOC113540869
XM_034303136.1 mRNA upstream 65244 22738208 ~ 22742475 (-) True LOC113540936
XM_026937355.2 mRNA upstream 73770 22746734 ~ 22771911 (-) True ppp2r5d
XM_026937354.2 mRNA upstream 74982 22747946 ~ 22771957 (-) False ppp2r5d
XM_026937279.2 mRNA upstream 101391 22774355 ~ 22788804 (-) True znf318
TU60345 other downstream 525251 22035285 ~ 22101383 (-) False LOC113540944
TU60082 other downstream 676445 21949855 ~ 21950189 (-) True G50837
trnai-uau other downstream 730357 21896184 ~ 21896277 (-) True trnai-uau
TU59887 other downstream 1012367 21611774 ~ 21614267 (-) False plekhh2
TU58946 other downstream 2257205 20357988 ~ 20369429 (-) False gng2
XR_003404067.2 other upstream 101391 22774355 ~ 22788783 (-) False znf318
XR_003404066.2 other upstream 101391 22774355 ~ 22788783 (-) False znf318
TU60979 other upstream 774944 23447908 ~ 23454217 (-) True G51576
XR_004577819.1 other upstream 1344300 24017264 ~ 24040100 (-) False mlh1
XR_003404244.2 other upstream 1780155 24453119 ~ 24651847 (-) False lyst

Expression Profile