RNA id: XM_026937353.2


Basic Information

Item Value
RNA id XM_026937353.2
length 2540
RNA type mRNA
GC content 0.45
exon number 11
gene id fam120b
representative False

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 22964720 ~ 22977643 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTATGCAGATATTCATTGTAAACATTGAGCTAACCACTGCGTAGTGCCTGGCAGGCAATGTGACAGTTTGTTGCTTATCATCAGATTTATTGTTCtgaacctgcaaaaaaaaaaagtgtgcagtCATGGGGGTGAAAGGCTTACAGTACTTTATGGAGACTTGTTATCCAGAGACTTGCATACATGTGGACTTGAGACAGTTGGCTGCAGCTCATGCCGAAGCCCATCCTGACATAATGCCTACTGTAGTGGTGGATGGAATGGCCTGTTTGAGGTACTGGTATCAGTGTCAAGCCTGGGTCCATGGTGGTCAGTGGAAGGAgtacatgcattttttaaacaaatttgtgGAGGCATTCACAGTGACGGGCATAAGATTGGTCTTCTTCTTTGATGGGACCATAGAGGAACAGAAGAGAGCAGAATGGGTGAAGAGACGCCTGAGAGTCAACCAGGACATAGCCAGAATATTTAACTACATTAAGAATCGCCACCAGCAACCAGATAGAGAACTGTTCTGCCTCCCCTCAGGACTGGCCACCTTCTCCAGGTTTGCGCTAAAATCTCTTGGTCAAGAAACACGTTGCTCTGTTCGTGAAGGTGACTACGAGATCTCGGAATACGCACTCCGTAACAACTGCATAGGTATCCTTGGTCAGGATACAGACTTTGTCATTTATGACACAGTTCCATATATGTCCATTGCTAAACTCAGATTAGAAAATATGACCACAGTGCAGTACTCCAGAGAAAAGCTGTGTGACATCCTGAAGCTTCAGAAGTCGGATCTTCCTTTCCTGgcatgcattctgggtaatgaTATTGTTCCAGAGCATCAGCTGCAGAATCTCCGTAAAAATGCTTTGACCTTGTATGGGAAAGAACACCAGGGTGACAAAGTCCAAGCAGCAGCGGAGTTCATAAAAAGCCATCGTCCAAACAGTGATGAAACTTGTGGCATCTCCTCACTACCTTTATCCAAAGTTGATGTGGAGGTTGTTGAAAAGGGAATCCAGTCATATCTTCTCCCAGGACAAACATCACCTTGGTTAGATCGAAGCCTACCTTTCCcagagctggtgtgtgtgatgggaaaGTACCTGAACAAAGACATATTGCAGGATGGAGTGGTGGAATGCAGCAATACACTGGAAGACGAGGAACTTGGACTGCCACCTCAGGCTATTTTATACCAACCACTTAGAGAACATATCTACAGTATTCTCCTCCCTAGATCTTACGGCGAAACCTTGTCTGTGAAGGAATGGTTTGTTTTTCCCAGAAATCCACTTAAAGAGCCAAAAATAGTGGCTCCAACACCTCTAAACCTTCCagAGGGAACGCCTGACCTTCAGACTCTGTGGTTTGGGAACGACTCAGAGATGACAAGTGTTCGAGTGTCTACTTTCCTGGCTGTTTTTGACCTACAGGACTTTACTGAAGATCTGAAATCTTTTGACACTCCTTTGGTAgctgtgatttgtcttgtaaCGTACATAGCTATTCAGGCTAAACACTTTTCGGTAGAAGACATAGATGCATATCTAAGCCAAGCTGTCTGTATCAGATATAAGTCTTACACAGACCTGCAACACATGAGgGTTCCTCAGGTGGACCCAAGGGCTGTTCACCTTGGTTCCCTCTTTGTACGGGGCTTAACCTACCTGATTGCTGCCAATAGTGCCTGTGGATTTCCTTTTGCCATGAATGAGATCATGCCTTGGAAAATATTTGATGGCTTGCTGTTCCATTCTAAGTACCTACAAGCACACTCTGGTTGCGCTAAAGAGGAGCTTCTAGAGGGCAACCCTGCGTGGATATCACTCTTTCTCACCCTTCGAGATCTGGTGCTCAAAGCCTGCAGAAGACATGGCTCTACTCTCCTTAGTTTTCCATGCAGACTTCAGCATGGGAGGCCCATGGATGCAGAGTCTCACAGAGAATGTGAACCCCAACTCCTTAGCACCTCAGACTGCTACTATAGACAGCAACCCAGGGGTCCAGCCTTCCACATGGAAGGACATGGCTATAGACCAAGATCAAGAACAAGACATCCTAACAGAAGAAGGAATTACCTTGCCCCAAGATGGCCTCGGTAGCAAAGCTAAAGACCAGCTTTCCCTTGACCCAAAAATGCTCAAGAAAAGAGATCATGGAGGTATTTGATGGATCATTCATTCTGGTGAAATGAAACTTCACTGATCTTCATGGATTCTTTTGACTCCTTGCCCATCCTGCAATGCAGATGGCTGTTCACAAGGCATTGTCTACTGTGGCTTTAACTGTCTGGCTTTGATGACTGAATAGGGTGTGGTAGTTTTATAACACACTCCTCCACACATTGTCTTGCTATCAGTGAGGGGATGCTCACTGAATGAAAACCAGTGCCAATATTTTCCAAAGATACttatgaaaacaaaactgaacaatAATAAGCACCTGTCCTTGCTACTGGCACATACAGTATGCCATTTGTTTGCACAGTGTACATGTAgtcaacaaaagaaaaaaagcacaataaaaaGATGAATCAAGATGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU60769 lncRNA downstream 74213 22890297 ~ 22890507 (-) True G51390
TU60768 lncRNA downstream 74446 22890059 ~ 22890274 (-) True G51389
TU60643 lncRNA downstream 221448 22647350 ~ 22743272 (-) True G51289
TU60626 lncRNA downstream 356683 22605547 ~ 22608037 (-) True G51276
TU60484 lncRNA downstream 398193 22565799 ~ 22566527 (-) False LOC113541574
TU60844 lncRNA upstream 92700 23070343 ~ 23070721 (-) True G51462
XR_003403951.2 lncRNA upstream 238205 23215848 ~ 23218757 (-) True LOC113539667
TU60916 lncRNA upstream 282553 23260196 ~ 23266336 (-) True G51523
TU60957 lncRNA upstream 436037 23413680 ~ 23413941 (-) True G51557
TU60980 lncRNA upstream 479857 23457500 ~ 23457991 (-) True G51577
XM_026937357.2 mRNA downstream 29859 22927645 ~ 22934861 (-) True ppm1g
XM_026937407.2 mRNA downstream 40980 22913819 ~ 22923740 (-) True apmap
XM_034303142.1 mRNA downstream 98277 22826230 ~ 22866443 (-) False LOC113540882
XM_034303141.1 mRNA downstream 98277 22826230 ~ 22866443 (-) False LOC113540882
XM_034303140.1 mRNA downstream 98277 22826230 ~ 22866443 (-) True LOC113540882
XM_034303119.1 mRNA upstream 54555 23032198 ~ 23049124 (-) True phf10
XM_026941612.2 mRNA upstream 694776 23672419 ~ 23679981 (-) True c1d
XM_034302271.1 mRNA upstream 694776 23672419 ~ 23679731 (-) False c1d
XM_026942047.2 mRNA upstream 749509 23727152 ~ 23750761 (-) False kifc1
XM_026942038.2 mRNA upstream 749509 23727152 ~ 23750761 (-) True kifc1
XR_003404067.2 other downstream 175937 22774355 ~ 22788783 (-) False znf318
XR_003404066.2 other downstream 175937 22774355 ~ 22788783 (-) False znf318
TU60345 other downstream 863337 22035285 ~ 22101383 (-) False LOC113540944
TU60082 other downstream 1014531 21949855 ~ 21950189 (-) True G50837
trnai-uau other downstream 1068443 21896184 ~ 21896277 (-) True trnai-uau
TU60979 other upstream 470265 23447908 ~ 23454217 (-) True G51576
XR_004577819.1 other upstream 1039621 24017264 ~ 24040100 (-) False mlh1
XR_003404244.2 other upstream 1475476 24453119 ~ 24651847 (-) False lyst
XR_004577838.1 other upstream 1494060 24471703 ~ 24651847 (-) False lyst
XR_004577835.1 other upstream 1704603 24682246 ~ 24735887 (-) False herc4

Expression Profile