RNA id: XM_026937355.2


Basic Information

Item Value
RNA id XM_026937355.2
length 3453
RNA type mRNA
GC content 0.44
exon number 17
gene id ppp2r5d
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 22746734 ~ 22771957 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AACGCACCGGGCTCGACTCAGCCATTCAGCATAGTCTGTAAGTTACAACTAACAGAGCGCGTAACTGGAAAGCGGTATCGTTTCTTGTGCTGGCAAATTTAAAACAGCTCGTATAAAGCACTTGTGGCCAACATCATTTGCGGTGTTCCTCCCTTTTTAATTCAGAAAAACGAGTCCAATAGTGAAGTGGTGTCGGCTTGTCTCCAGGCCGTGTCGTCTCTCACGGACCAATCAGCTTCCAGCGGGCCTGAGAGCGCAGCGCGAGccctgactgactgactgagcgCTCGAGCGTGCGGGGAGATTCTGTCACTGAGGCACCACCAAACAGCGCATCCGCAAAATGCCGAATAAAacgaaaaaagaaaagGAATCGCCGAAATCTGCGAAAGCcagcagtaaaaacagtaaCGTCAACGCTGGAAAGGATACTGGGACTGAAAATTCAGACGAGgCGCAGCAGCAGTCAGCCAGCAAGCGTCCTAGCAACAGCACTCCACCTCCAACTCAGCTCAACAAAATCAAGTACTCAGGTGGTCCACAGATTGTCAAGAAAGAGCGCCGACAGAGCTCTTCTCGCTTTAACCTCAGCAAGAACCGTGAGCTACAGAAGCTTCCTGCACTTAAAGATGCCCCACCTATCGACAGGGAGGAGTTGTTTGTTCAGAAGCTGCGCCAGTGCTGTGTGCTGTTTGACTTCGTGACGGATCCTCTCAGTGATCTGAAGTACAAGGAAGTGAAGCGTGCCGGACTGAATGAGATGGTggaatacatcacacacaatcGTGATGTAGTTACTGAATGCATCTATCCCGAGGCTGTCATTATGTTTTCAGTGAACCTATTTAGGACCCTGCCTCCTTCTTCTAATCCTACTGGAGCAGAATTTGATCCTGAGGAGGATGAGCCTACACTGGAGGCAGCTTGGCCCCACCTGCAGCTGGTGTATGAATTCTTCTTGCGCTTCTTGGAGTCACCTGATTTCCAGCCTAATATCGCCAAAAAATACATTGACCAAAAGTTTGTATTGTCTCTCCTGGAGCTATTTGACAGTGAAGACCCCAGAGAGCGGGACTTCTTGAAAACAATTCTACACAGGATTTATGGCAAGTTCCTGGGACTTAGAGCATACATCCGTCGACAGATCAACAACATATTCTATAGGTTTATATATGAAACAGAGCATCACAATGGCATTGCAGAGCTCTTGGAAATTCTAGGAAGTATAATTAATGGCTTTGCCCTGCCATTGAAAGAGGAGCACAAAATGTTCCTGATTCGAGTGCTCCTGCCACTGCACAAGGTCAAGTCACTCAGTGTCTATCACCCTCAgCTGGCATACTGTGTTGTTCAGTTTTTGGAAAAAGACAGCAGTCTCACTGAACCAGTTATAATGGGTCTGTTGAAGTTCTGGCCCAAGACCCATAGTCCTAAAGAGGTGATGTTCTTGAACGAGTTGGAGGAAATCCTGGATGTCATTGAGCCTTCAGAGTTTGTAAAAGTTATGGAGCCTCTGTTTAGACAGCTAGCCAAGTGTGTATCAAGTCCGCACTTTCAGGTTGCTGAAAGGGCACTGTATTACTGGAACAACGAGTACATCATGAGTCTGATCAGTGACAATGCTGCCAAAATCCTTCCCATCATGTTCCCTGCTCTTTATAAGAACTCCAAAAGTCATTGGAACAAGACAATCCATGGGCTTATTTACAATGCTCTGAAGCTCTTTATGGAGATGAACCAGAAGCTGTTTGATGATTGCACTCAGCAGTACAAAGCGGAGAAGCAAAAGGAGAAGTACAAACTAAAGGAGCGGGAAGAGATCTGGCACAAGATTGAACAGCTTGCTAAACAAAATCCTCAGatTACAAAGATCCATCCTAGTCTCCGACCTGGTCTGCCTCAGGATGCGtatataatgtataatgaaaACCAAGGGATGCCACACTATTCCATGGAGACAGAGACTCCCACTGCTGAGGACATCCAGCTGCTGAAGAAGACTGTGGAATCTGAGGCTTCACAGGGAATGAAGGATATAAAGAAGGACAAGGTGCTGATGCGACGGAAGTCAGAGCTGCCGCAGGATGTGTACACTATAAAGGCTCTGGAGGCCCACAAGCGGTCAGAAGAGTACCTGACTGCTAATCAGGAAGCCCTCTGACTGAGGAACACCACAACCAGTCACCTGCACCACGCCTAGACTGTCCCACTCGTATTTGTCCAGACATGTCGCCTGCTGTATACTCCCCCTCCTTTCCTCCTTTTGTCTCTGCCTCTTTCCTTCTTCACTTCCTCTTGGAGAGGCCTTTCTGCAAAATCCTGGCTAGCACGCAATCATGAAGAgctcccattctctctctcttgctcgctctctctcacttgcGCTTTCTCTTCTTCCCTCCTTGCCGCTTCCATTTCAATGGCAACTCCAAACCACAAAAAACAATCATGAAAAACAGTATGTGAATTGTACTacaacaatttatttttcaaaaaaatgtttcctCTTTATTGtggtattttttaatgttctatATTTTGTTGCAATTTTTCCAAATTTTACTGTCTTCACCTCTTTTGCCCTGCTTTTAAACTGTTGTTTTCTCacttttcccttcactggccCAGTACATCCATACTCACTTAGGCAATCGACTGCGTTGTCTAAAAGATAATAAGCAACCCATTAGTGACACTGACAGTGCATTTGCTTGAGCCAGATTTAGGGACTGGGGAGTGTAGGTCTTTATTTCTGGATCATGTTGCCTTGCTCTTGTGGGACAGTGTGATGCATATGAATGTTAACTTGCTATCAAAATATACCACAGGCAGCCTACAGGATCTGTAGAGTTGTTTGTTCCCTGCAGAACCTAGCTGTTGATAATTCTTGGTGTCCTCATGCAATAAGTTCAAAGTAAAATATAACTGTGTAAAAGTACATGAAAAATACCTCAAGACAAGGCATCATGCTTCCTTCTTAGATGTCGTAAGTTCAAGCTTTTGTCATCAGCTCAGCAACTGACATAAGAATTAGCCAGGTTTATTGGTCCAGATGCATGTGCTAGTGGCAGTCTGAAGTGTCTGAACTGAAAGCCTTGCTGTGCAGTAGCCAAATGGTGGAATCgctatgattttatttatgccTGTAGTCACATTTATACTGTCAACAGGATTTAATGTTTAGCCTGTTTCCTGCCTTACTGGTGAACTGAGAACACAACACTGTAAGGTGCTGAATGAAATTGCTGACCTCTTAAAACACCAGCAGACCATTCCATATTTCATTATCATTCTACAAAAGAATGCTGTATCTCAATGTTCTGTACCTCAAAAATGTGTCTATAAGTTACCAGTCATTACACATGGTTCCATGATGTGTGGTTACATATttgtaatgttttcatttttttaattgattaacaATTCCCTTTAAACAGCTATGTTTATCTCATA

Function

GO:

id name namespace
GO:0007165 signal transduction biological_process
GO:0000159 protein phosphatase type 2A complex cellular_component

KEGG:

id description
K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B'

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU60643 lncRNA downstream 3462 22647350 ~ 22743272 (-) True G51289
TU60626 lncRNA downstream 138697 22605547 ~ 22608037 (-) True G51276
TU60484 lncRNA downstream 180207 22565799 ~ 22566527 (-) False LOC113541574
TU60485 lncRNA downstream 200244 22544227 ~ 22546490 (-) True G51169
XR_004577860.1 lncRNA downstream 569403 22165739 ~ 22177331 (-) False LOC117596869
TU60768 lncRNA upstream 118148 22890059 ~ 22890274 (-) True G51389
TU60769 lncRNA upstream 118386 22890297 ~ 22890507 (-) True G51390
TU60844 lncRNA upstream 298432 23070343 ~ 23070721 (-) True G51462
XR_003403951.2 lncRNA upstream 443937 23215848 ~ 23218757 (-) True LOC113539667
TU60916 lncRNA upstream 488285 23260196 ~ 23266336 (-) True G51523
XM_034303136.1 mRNA downstream 4259 22738208 ~ 22742475 (-) True LOC113540936
XM_026937502.2 mRNA downstream 17427 22726906 ~ 22729307 (-) True LOC113540869
XM_026937339.2 mRNA downstream 57429 22626634 ~ 22689305 (-) True tjap1
XM_034302888.1 mRNA downstream 73770 22626634 ~ 22672964 (-) False tjap1
XM_026936487.2 mRNA downstream 148535 22589052 ~ 22598199 (-) True ncoa4
XM_026937279.2 mRNA upstream 2444 22774355 ~ 22788804 (-) True znf318
XM_026937294.2 mRNA upstream 2444 22774355 ~ 22788783 (-) False znf318
XM_026937305.2 mRNA upstream 2444 22774355 ~ 22788783 (-) False znf318
XM_034302693.1 mRNA upstream 19272 22791183 ~ 22814948 (-) False si:dkeyp-121d4.3
XM_034302692.1 mRNA upstream 19735 22791646 ~ 22814947 (-) False si:dkeyp-121d4.3
TU60345 other downstream 645351 22035285 ~ 22101383 (-) False LOC113540944
TU60082 other downstream 796545 21949855 ~ 21950189 (-) True G50837
trnai-uau other downstream 850457 21896184 ~ 21896277 (-) True trnai-uau
TU59887 other downstream 1132467 21611774 ~ 21614267 (-) False plekhh2
TU58946 other downstream 2377305 20357988 ~ 20369429 (-) False gng2
XR_003404067.2 other upstream 2444 22774355 ~ 22788783 (-) False znf318
XR_003404066.2 other upstream 2444 22774355 ~ 22788783 (-) False znf318
TU60979 other upstream 675997 23447908 ~ 23454217 (-) True G51576
XR_004577819.1 other upstream 1245353 24017264 ~ 24040100 (-) False mlh1
XR_003404244.2 other upstream 1681208 24453119 ~ 24651847 (-) False lyst

Expression Profile