RNA id: XM_026937407.2


Basic Information

Item Value
RNA id XM_026937407.2
length 2170
RNA type mRNA
GC content 0.45
exon number 9
gene id apmap
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 22913819 ~ 22923740 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

acacacacacacacacacacacacacacacaccccagtgcTGTAACGTGAAAAGGAGAAGCAAAGGGAGCAGCTCCACAcggctgtggtgtgtgtgatgtaaagacTGCACTGCTCTTCAGCACAGCAGGGAGAAGTGAAAGATCAGCCATTTCAGTATGAATGAGCCAGAAGGACTGCGCTTCAGGAAGCTCAACAGACCGCAGATTGTAACTGACGAATCGCATGAACCCCAATACAAAAGCACGAGCACGTACAGTGGGAAGGTGTTCCGGGTCACTCTGCTGTCTCTGGCTGCGTTCCTGATTCTCCCAGTACTGGTGGTCACTTTTCTCCTGGAGTCCCCCATTCAGCCAGAAGCATTCAGTCTCAATGAACCACCGCTCATGACTGGTTGCTTTGAACCCAACCTAAAGCTTAGACAGGCAGAAAGACTATTTGAGGACCAGCTCGTTGGGCCTGAATCCATCGCTAATATTGGAGatatTCTGTACACAGGTACTGCAGATGGAAGGATTGTGAAAATTGATGGGAGGAAAATCAGTGTTGTGGCAACTCTGGGCAAGCCTCCATGTGGGTCTCCTGAGCAGGAGCATGTTTGTGGACGGCCGCTGGGAATTAGAGTGGGTCCGAATGGCACCTTGTTTGTGGCTGATGCCTACCTGGGGCTGTTTGAGGTTAATCCTGTCACAGGTGAGACAACACTTCTAGTGAGCACAAAGAAGATGATCGGGGGTCGACGTCTCTCCTTTGTCAATGACCTGGATGTGACACAGGATGGGAAGAAGGTGTATTTCACTGATTCTAGCAGCAGATGGCAGCGTAGGGACTTCATGAAACTCATCATGGAGGCCACAGCTGATGGCCGGGTTCTGGAGTATGATACTGAGACTAAAGAGGTTGCAGTCATGATGGAGAACTTGCGCTTTCCTAACGGTATTCAACTCCTTCCCGATGAAGAGTCTGTTCTTGTTGCTGAAACTACGATGGCAAGAATAAGGAGGATTCACGTGGCTGGTCTCAATAAGGGAGGCATGGACACTTTTATAGAAAACCTGCCTGGCTTCCCTGACAACATCCGCCGCAGCTCCTCTGGTGGTTACTGGGTGGCCATGTCTGCCATCCGGCCAAACCCGGGCTTCTCCATGCTCGACTTCTTGTCACAAAGACCCTGGATTAAGAATATCATATTTAAGCTCTTCAGCCAGGAAACACTAATGAAGTTTGTGCCGCGCTACAGTCTGGTGGTGGAGCTGCAGGATGGAGGAACATGTGTGCGGAGTTTCCATGACCCTCATGGCACTGTGGCGGCCTACATCAGCGAGGCGCATGAGCACAACGGTCACCTTTACCTGGGCTCCTTCCGCTCTCCTTACCTATGTAAACTGGACTTGAGCAAAGTGTAAAATAGTCCTAAAGGAACATGGGACTATAGGTCAGAGGCATTTCCTGGGGCTTCTTTATCAGTCATGTAACATTTCCTCAAGAAGCAGCAAACCTTTTTGTACCCTCTCCCATAATCCCCTGCTGAACTGAGGAACCTGAGTCCTTCATACCCATTCCTGCATTTAATTCAGATGCCATCATTCAGCTTTGATTTATGTTTAGGTTTTTGTTCTGCTGAGCCATGTGACTTTGTATTTTAATTCTCCCTTTTTAGGTTGagtgatgtgtatatataggcATGCCTGCAGATGTCAGcttgctttatttaaaagacaTGACATTTCTATATTTGTTTTGCTCCTATGACAGGAGGTGCACAGTGTTTGCActgtgatgtgttttatttgcacTGAACTGTCATCTGGCCCTTAAAATAGAGCTGCTGATTTACTTGAAAACTTTGAGACAGAAATATCAGTGCAGATGATGACTTgtgaaatttataaattctaGTTGCAGGACTGAAATGTAACTCTGGAATGATGAAACAGTATTTTAGAAATCCAGTGCTTTATcttaaaacactgacattatgTTTAAGAGTCTCTGAGCTTCCATTTGCAAAAATCATTTCAGCTTTGAAGAAGGAACTAACAATTAGCAATAATTTCCTGTTGAATGCTTATGCCAATTTGTGAATTGTGGTAACTGTCTGTGGTAACATTCATAGCAGCTACTGCATAGcatgtacaataaataaataaataaatagataaataaatgta

Function

GO:

id name namespace
GO:0009058 biosynthetic process biological_process
GO:0016021 integral component of membrane cellular_component
GO:0016844 strictosidine synthase activity molecular_function

KEGG:

id description
K21407 APMAP; adipocyte plasma membrane-associated protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU60769 lncRNA downstream 23312 22890297 ~ 22890507 (-) True G51390
TU60768 lncRNA downstream 23545 22890059 ~ 22890274 (-) True G51389
TU60643 lncRNA downstream 170547 22647350 ~ 22743272 (-) True G51289
TU60626 lncRNA downstream 305782 22605547 ~ 22608037 (-) True G51276
TU60484 lncRNA downstream 347292 22565799 ~ 22566527 (-) False LOC113541574
TU60844 lncRNA upstream 146603 23070343 ~ 23070721 (-) True G51462
XR_003403951.2 lncRNA upstream 292108 23215848 ~ 23218757 (-) True LOC113539667
TU60916 lncRNA upstream 336456 23260196 ~ 23266336 (-) True G51523
TU60957 lncRNA upstream 489940 23413680 ~ 23413941 (-) True G51557
TU60980 lncRNA upstream 533760 23457500 ~ 23457991 (-) True G51577
XM_034303142.1 mRNA downstream 47376 22826230 ~ 22866443 (-) False LOC113540882
XM_034303141.1 mRNA downstream 47376 22826230 ~ 22866443 (-) False LOC113540882
XM_034303140.1 mRNA downstream 47376 22826230 ~ 22866443 (-) True LOC113540882
XM_034302693.1 mRNA downstream 98871 22791183 ~ 22814948 (-) False si:dkeyp-121d4.3
XM_034302692.1 mRNA downstream 98872 22791646 ~ 22814947 (-) False si:dkeyp-121d4.3
XM_026937357.2 mRNA upstream 3905 22927645 ~ 22934861 (-) True ppm1g
XM_026937353.2 mRNA upstream 40980 22964720 ~ 22977643 (-) False fam120b
XM_026937352.2 mRNA upstream 40980 22964720 ~ 22977643 (-) True fam120b
XM_034303119.1 mRNA upstream 108458 23032198 ~ 23049124 (-) True phf10
XM_026941612.2 mRNA upstream 748679 23672419 ~ 23679981 (-) True c1d
XR_003404067.2 other downstream 125036 22774355 ~ 22788783 (-) False znf318
XR_003404066.2 other downstream 125036 22774355 ~ 22788783 (-) False znf318
TU60345 other downstream 812436 22035285 ~ 22101383 (-) False LOC113540944
TU60082 other downstream 963630 21949855 ~ 21950189 (-) True G50837
trnai-uau other downstream 1017542 21896184 ~ 21896277 (-) True trnai-uau
TU60979 other upstream 524168 23447908 ~ 23454217 (-) True G51576
XR_004577819.1 other upstream 1093524 24017264 ~ 24040100 (-) False mlh1
XR_003404244.2 other upstream 1529379 24453119 ~ 24651847 (-) False lyst
XR_004577838.1 other upstream 1547963 24471703 ~ 24651847 (-) False lyst
XR_004577835.1 other upstream 1758506 24682246 ~ 24735887 (-) False herc4

Expression Profile