RNA id: XM_026937420.2


Basic Information

Item Value
RNA id XM_026937420.2
length 1812
RNA type mRNA
GC content 0.52
exon number 6
gene id lrrc73
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 22608479 ~ 22621693 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GAAACACACTCAGTGGAGACTTGCATTGTAGGCGACCCTTAGCACAATTCCCCCTACAGTAAGCGCTCAGAAGCGGATTATCTGCACCTCGAGGCTTTCAGAGCATCGCGAGGGATTTGGCTGGATGGGCTGCTGCTCTTTATCTGGACGGGTGGTGTCCATGGTAACGGACACCAGGAACGATTAGCTTTGTCTGGATGCCGCAAAACGCATTCGTGTTTCTCACGCAGAAGTGGACAACCTGAACCTGAGAATACTGCACCTGTTCAAGGGGTTAAAGCCATATTTATTGGCTTGCCAGCCCAAGAAATCAAACGAATTGAAGACCTGTTATCGGAGGAAAGGTCTGGGTCTGTCGGAACTTTGGAGATGCTAATGGCATGACCGCAAATCCTCAGGGTTTGTAGTTTTCCTCAAGCGGCATGCTGTTTCCTTTTCGCATCAGCACTCTGTTGTTTTAGTGTGGCTCTGAATGATGTAGCTAGTTATTTCGTGGGGGGCGTCGTCTCTTTTTGCTGCCGAAGTTAGCTGCCTTACCTCAGTTACCTGAATCGACGATGGTGTCGGCTCGAGCGTGACTTCCAGCCTCACCAAGATGCTGCCGGGTTCAATTCAGATCACAGGAGAGGCGCTGTCCGGAGCAGAAATCCGAGACATCTGCGACAGTCTGAAGGAGAACAGTGTGAGGCTGTTGTCGGTGCGGGGCTGTCAGCTGTCCGACAGGGACTTCGGGCGCGTGTGCCGCGGGGTGTCCGAGTCCCGCTCGCTCGCGCAGCTCAACCTGAACCTGGGCGTGGTGTCGAGCGGCGGCCGCGCAAAGCAGCTCGCCGAGGCGCTCACAGCCAACAGGTCCATACAGACACTGTTTCTGCATGGAAGCCCTCTTTTAGATGCAGGGTTGGTCACTCTGAACACGGCGCTGTCAACTCACCCCTCTCTGGTGTCCTTGGACCTGGGAGATTGTATGCTGGGAGATGAGGCGATTCAGCTGATTTGTGGCATGTTGCCTCCAGATGGGGCCAAATCTGGTCTCAGAGAGTTGACACTAAGTGCAAACCCAGCAATCACCACTAAAGGCTGGGCTCGCCTGGCAATCGCAGTGGCTCATAGCTCACAGCTGCGGGTCCTTAATCTAGACTACAATCCGTTAGGGGACCAGATTGCTGGAATGCTGGCTGTTGCTGTGGCATCCAGCAGGACACTGGAGGTTTTAGACTTGGAGGGAACAGGACTCACAAATCAATCAGCACAGGTCTTCCTGGACATGGTGGAGAACTACCCGACCTGTCTGCGTGTGCTGGTGCTGGCTGAGAACGCCATCAGCCCTGAGCTGCAGCAGCAGATCTCTGACCTCCTGTCTGAGGGcgaggaggatgaggacagAGATGCAGAGGCCCACGGCAGCTCAGTCACCATGCGAGAGAAACCTGCCTGGCTTCCCCACAGCAACCCCAACTCCCAGATGGTCCTGATGTCATCAGGACTGGGTGAGAGCTTTTTGGGAGAGACTGACTTGTGATAACTGGAGCTGCCTTTGGTTTTAGGTTTGCACTGCACGCCGCTACCGTCAGCCCACGTGTTAGCGTGCAGCCACTCACAAAGCATGACGTGTAGCATTTAGTGGTAGACTGTTCAACGCTGGCACAAAAATAACCTCGACCACCAAGTGACTTATACTCTAtagtgaattatttatttgcctGATGTACAATCTATTTATAAGTAACTATTTAAGCAACAGTGTACTCTTGATTAGATCAGCTAAGTAGGGTTGTTGTGATGGCCTGAATAAATCTATTTACATCTTTCTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU60476 lncRNA upstream 59192 22531151 ~ 22550174 (+) True LOC113538739
TU60477 lncRNA upstream 72929 22534338 ~ 22536437 (+) True G51161
XR_003403906.2 lncRNA upstream 159857 22424419 ~ 22449509 (+) True LOC113539127
XR_004577857.1 lncRNA upstream 159857 22444754 ~ 22449509 (+) False LOC113539127
TU60216 lncRNA upstream 321264 22285438 ~ 22288102 (+) True G50938
XR_004577901.1 lncRNA downstream 107629 22729322 ~ 22736667 (+) False LOC117596907
XR_004577900.1 lncRNA downstream 107639 22729332 ~ 22736667 (+) True LOC117596907
XR_004577902.1 lncRNA downstream 107959 22729652 ~ 22736667 (+) False LOC117596907
TU60716 lncRNA downstream 289451 22911144 ~ 22913537 (+) False LOC113540861
TU60717 lncRNA downstream 289451 22911144 ~ 22913537 (+) True LOC113540861
XM_026945034.2 mRNA upstream 1336 22601556 ~ 22608030 (+) True yipf3
XM_034302782.1 mRNA upstream 21722 22571371 ~ 22587644 (+) True timm23b
XM_026938663.2 mRNA upstream 21722 22571371 ~ 22587644 (+) False timm23b
XM_026934094.2 mRNA upstream 62917 22485313 ~ 22546449 (+) False LOC113538739
XM_026937395.2 mRNA downstream 74702 22696395 ~ 22720888 (+) False dlk2
XM_026937386.2 mRNA downstream 74702 22696395 ~ 22720888 (+) False dlk2
XM_026937376.2 mRNA downstream 81827 22703520 ~ 22720888 (+) True dlk2
XM_026937369.2 mRNA downstream 85699 22707392 ~ 22720888 (+) False dlk2
XM_026937459.2 mRNA downstream 121034 22742727 ~ 22745804 (+) True mea1
TU60121 other upstream 585555 22021407 ~ 22023811 (+) True wu:fj16a03
trnae-cuc_10 other upstream 1603847 21005450 ~ 21005519 (+) True trnae-cuc_10
TU59013 other upstream 2033887 20574973 ~ 20575479 (+) True G49862
XR_003403774.2 other upstream 3253268 19341350 ~ 19356098 (+) False sfxn5a
TU60615 other downstream 162635 22784328 ~ 22786505 (+) True G51271
XR_003404579.1 other downstream 492492 23114185 ~ 23115039 (+) True LOC113545030
TU60962 other downstream 832735 23454428 ~ 23455549 (+) True G51562
TU61166 other downstream 1075339 23697032 ~ 23697294 (+) True G51749
TU61214 other downstream 1171987 23793680 ~ 23805495 (+) False slc29a3

Expression Profile