RNA id: XM_026937701.2


Basic Information

Item Value
RNA id XM_026937701.2
length 3325
RNA type mRNA
GC content 0.45
exon number 22
gene id papolg
representative False

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 13556873 ~ 13571810 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCCATATTGGAGTACAACTATTGTTATAAAAAGAGACGGGGCTGCTGTTAGCTGAGTTTATGTTTTCTTCAagtgtgatttaaaaatataaggtATTTTCTACGAAGGGTCATGAAAGAAATGTCAGCTTCGGGAAATAATATGCTTGGCGGGCAGCAGCCTCAGAAACACTATGGCATCACGTCCTCAATCAGCCTGGCCTTTCCCCGGGATATCGACCACCTGTACACTCAGAAACTCATGGAGGCTATGAAACCTTTTGGAGTGtttgaggatgaagatgagctTAATCACAGGCTTGCAGTTCTTGGTAAACTGAATTCATTTGTTAAAGAGTGGATTGCAGAGATCAGTGAATCAAAGAATCTGCCACCTTCGGCTGTAGCAAACGTTGGGGGGAAAATCTTTACCTTCGGGTCCTACAGGCTGGGAGTGCACACAAAAGGTGCTGATATAGATGCCTTGTGTGTGGCACCTCGACATGTTGAAAGGAGTGatttttttacatctttttttgaaaaactcAAACAGCACGATGAGATCAAGGACCTACGGGCTGTAGAAGATGCATTTGTACCAGTGATCAAATTCAAGTTTGATGGGATAGAGATTGATCTTCTTTTTGCAAGGCTTGCCCTGCAGTCTATTCCAGATAACCTGGACCTTAGAGGAGATTCTCTGCTCAGAAACCTGGATATTCGATGTATTCGCAGTTTAAACGGTTGTCGTGTTACCGATGAAATCCTGTACTTGGTGCCCAACAAAGAGAACTTCAGACTTACTCTACGGGCCATCAAACTGTGGGCTAAACGTCGTGGAATCTACTCTAACATGCTTGGCTTCCTGGGTGGTGTGTCCTGGGCCATGCTGGTGGCCAGAACCTGTCAGCTTTACCCAAACGCCGTGGCTGCCACACTTGTGCACAAATTCTTCCTTGTCTTCTCCAAATGGGAGTGGCCAAATCCTGTCCTTTTAAAGCAACCAGAAGACAGTAACTTGAATCTGCCAGTCTGGGACCCGCGGGTAAACCCATCAGACAGGTACCATTTGATGCCGATTATCACACCTGCATATCCCCAGCAGAATTCTACCTACAACGTGTCCACCTCCACCCGCACCATCATGAGCGAGGAGTTCAAATATGGCCTTACAGTTACAGATGAAATCCTTCAGGGTAAGGCCGAGTGGTCCAAGCTGTTCGAGCCACCAAACTTTTTTCAAAAGTACAaACATTATATCGTGCTTACTGCCAGTGCATCCACTGAGGAGAACCACCTAGAATGGGTTGGGCTGGTTGAGTCAAAGATTAGAGTTCTGGTTGGCAATTTGGAGCGAAATGAATACATCACCCTTGCTCACGTGAATCCCCAGTCTTTTCCCTGGTCGAAGGAGAGCCGAAATGACAATGAGTTTGTTTCGATGTGGTTCATTGGAATAATATTCAAAAAGTTGGAGAACGCTGACTGTGTGAACATTGATCTGACTTATGATATCCAGTCCTTTACAGACACTGTCTACAGGCAAGCCAGTAACATTAACATGCTGAAGGAAGGGATGACCATCGAAGCCACACACGTGAGGAAGAAGCAGCTACATCAATACCTCCCTGCTGAACTTGTGCACAGGGGCAAGAAGAAGAGCTTGGGAGATCTAAATCGCAGTTCAAATGGTGGTGGGTCTAAACGCTGTTCACTGGATGGCAGTCAGCTGGACAGTTCCAGAGATACAGACACAGGCACCCCATTCAGCTCTCCGACCCCAGTCATCAAAAGCTGCAAGTCAGCCTCCACACCTGATGACAGCATTACCCCACCCAAGCCTTCAGTTCCCATGTTTGTGGATAGCTCCCCATCCTCTGAGTCGTCTCCTCCAAAGAAAGGGCCAGGAATGTCCATTCCAGTAATTGGAGCAAAGACATCAGTCACCCAGGTGGCCAAGCCCACAGTGCCCATCGCAGGGAGCACcattcccactgtggtgggccGAAACGTGATGCCACGTATGAGCCCACCCAAAACCAGCTCATCTGACCTGACCAACGGCCTCAATGGAGCTGCACCTAAGAGGCCTCACTCGCCTTCACTGGAGGAGCCACACAAGAAACTGAAAGACACAGAACAGCAGGTGTTCTCCGatgattatacatttaaagAACCATACCCACCTTCCTCTAATGGCCAGGAAGCAGGAGATGGCCCAACAGGGGAGGATCATGCAATTACAAAGCCTATGCCCATTCCCACTATCGATACATCAAGGACACAGAGACTACCCAGTAAAGAACTGCCAGATGCTTCCTCTCCAGTACCTACGAGCAACCTGCGTGTCATTAAGAACTCAATCAGACTCACTCTTAACCGATAACAGTGAGCTCTCCATAGGTAATGGTAAATGTGGCAGCCattccaggattttttttttttcttttcatcttaaTTTACCATCATTCAGACTTTCTGCCTGGAGGCTACTTGAGAGAGCCAGACAACTGTGGACAGCGTCAGTGCTTTTAATTTCAGGCTGCCACAGGTGCTCATCTGATCTTCCTTGAGACATTGTAAAGCATTCAGTATAAAGTATTAGACTAtggtttttttatatatatatatactgcctcAATGTGTCAAAAATACTTGCTAAGTGGACACCTATCGGAGCGTGTTTTGAAATGTAACTTGTACAGTAGATGTAGTTTGTATATAATGTCTTTAAAGTCATTGTTAATCTTTCTATACCATTCTATTGTAGTTtttactaacaaaaaaaaaagtttaaaaaaaacgtgTTTTGTGTAATGgacagtttttgttttctttctttttttctttcctttttttttttctttttttccacttcccAGTCTTTTGCTATGACTGTCATGGTTCTGAATAGTGTTTAGACCCAGGACGTTTTTTGAAGGCGGAGTGGTAGCTGATTGGGCCTGCTTTGTCCTAAACATGACCTATTTACTGATATCAACCCACTGACCTAGCACATATGTATTTACTGCACCTGCAGCAAAGTGTGAAGGCTGAGGTTGGATGTTGTTTGTAAAGCCAGAGTGGACAGAGCAGGTCATGTTAGGCTTGTGTTTTGCTGAAATGGCTTATATTATTGCAGTATGAACtcagagtgaagtgtgtgtgcgtgtctgtgtgagtgagagagatttATTCCCTGACTTTAGGGCTTCACCTCTGCGCCTCCCATGGAGGTTTCGTTGGCAGCAGCGTATTACTTTCAGCAAAAAGAgacaaatggagaaaaattttatttctcagtgctttttttttcccccccatccACAAACCACTGctctccatat

Function

GO:

id name namespace
GO:0006378 mRNA polyadenylation biological_process
GO:0005634 nucleus cellular_component
GO:0003723 RNA binding molecular_function
GO:0004652 polynucleotide adenylyltransferase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU54100 lncRNA downstream 92134 13464496 ~ 13464739 (-) True G45755
TU54091 lncRNA downstream 125974 13430365 ~ 13430899 (-) False csgalnact2
TU53934 lncRNA downstream 243717 13312950 ~ 13313156 (-) True G45622
TU53928 lncRNA downstream 246633 13308094 ~ 13310240 (-) True G45616
TU53880 lncRNA downstream 306496 13248942 ~ 13250377 (-) True G45586
XR_003404420.2 lncRNA upstream 61043 13632755 ~ 13641524 (-) True LOC113543535
TU54560 lncRNA upstream 612056 14183768 ~ 14184086 (-) True G46183
TU54707 lncRNA upstream 717844 14289556 ~ 14291633 (-) True G46304
TU55041 lncRNA upstream 1041829 14613541 ~ 14613818 (-) True G46590
TU55042 lncRNA upstream 1042804 14614516 ~ 14614764 (-) True G46591
XM_034302760.1 mRNA downstream 2324 13545526 ~ 13554549 (-) True rel
XM_026937724.2 mRNA downstream 2341 13545526 ~ 13554532 (-) False rel
XM_026944855.2 mRNA downstream 20006 13531660 ~ 13536867 (-) True pdlim1
XM_026935679.2 mRNA downstream 39776 13502714 ~ 13517097 (-) True sgpl1
XM_034302724.1 mRNA downstream 61193 13465041 ~ 13495680 (-) False si:dkey-192p21.6
XM_034302995.1 mRNA upstream 280781 13852493 ~ 14033717 (-) False LOC117596880
XM_034302994.1 mRNA upstream 280781 13852493 ~ 14033717 (-) True LOC117596880
XM_026939319.2 mRNA upstream 484430 14056142 ~ 14068978 (-) True vrk2
XM_034302135.1 mRNA upstream 610307 14182019 ~ 14192243 (-) False ccdc85a
XM_026945080.2 mRNA upstream 796475 14368187 ~ 14387373 (-) True ddx43
XR_004577863.1 other downstream 525677 13005486 ~ 13031196 (-) False slka
trnal-cag other downstream 822591 12734200 ~ 12734282 (-) True trnal-cag
trnae-cuc_9 other downstream 887982 12668820 ~ 12668891 (-) True trnae-cuc_9
trnak-cuu_2 other downstream 888308 12668493 ~ 12668565 (-) True trnak-cuu_2
trnak-cuu_1 other downstream 917271 12639530 ~ 12639602 (-) True trnak-cuu_1
XR_004577668.1 other upstream 610179 14181891 ~ 14192243 (-) True ccdc85a
TU55100 other upstream 1208153 14779865 ~ 14784734 (-) False sdhaf4
TU55523 other upstream 1842229 15413941 ~ 15416483 (-) False c3h10orf53
XR_004577773.1 other upstream 3407419 16979131 ~ 16982729 (-) False morn4
XR_004577771.1 other upstream 3407419 16979131 ~ 16982729 (-) False morn4

Expression Profile