RNA id: XM_026937744.1


Basic Information

Item Value
RNA id XM_026937744.1
length 1338
RNA type mRNA
GC content 0.56
exon number 1
gene id LOC113540998
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 19301205 ~ 19302542 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATGGCGCCCCGCAGCCACAGCGCGCACTCATGTGCACATGCAACACGCGCATTTGGAGACAGAGACCGGCGCATCTTACTCACAATACCTCGAGCAGCACAGAAGCAGAACAGTGCTCAGAAGCGCAGAGGTCCCGGTCGCCATGACGCTTCCAAACCTCACATTTGTTTCAAGCAGAAAGCGTTACTAACACACCGGAGACGCTTTTACGCGCCCATGGAGCCTGAAACGGCGCTGAACGCGTGTTTTGTGGGTTTTGATGGAGGGATTCAGCAGCTGAGGGGCGAAGACACTGCGGTTATCTTACCTGCCATTTTTGGATTGATCAGCGCGGTAGGAATAGTAGGAAATGTTTTGGTAATTGTCATACTGATACACGATATAATAGTTAAGAAAAGTGCTTGTGGGATTGTCCTGATGCTTGTTAATCTCAGTGGAACAGATCTGGTGATCCTTGCAGTGTGCACTTCGACCCGGGCGATCACTTATCACAACCGGACATGGACACTTGGACATTTGGCCTGCCGGACAGCAGAGTGGTTCCAGCATGGCTGTTTGGCAGCAAAATCTCTCACACTGGCAGTCATGAGCCGAGCGCGATATAATTTTGACTGTGATCCTCACCTCAAGATAAAGAGAGTTCTCATTGCTGCTGGCTCTATATGGGCTCTTGGGTTAGCGCTACCAGTCGCTGAGATCATTTACTCTAAGCTGGAGGTGAAGGGGAACTTCAGTCTGTGCGTCACTGAGTTACCAAGTCACTCCTCTGACTTCATGCGCGTGCACAGTATAATCTACGCTCTGGTGGTCTACGCCTTCCCGGTCATCTTTTCCGCCGTGTGCCATGTGCGTGCCATCTTCCGAGTGACACGTGGCCACGGGGCGCGTGCGGCGCGCAGGACTGAAAGCCGCCTCGCGCTGCTGAGCGTCACTGCAGCTAATGCGCTTCTGCTGCTGCCCGGGTGGACAGTGTGGCTGTGGCTGCGTCACAGTTCCCGCGAGACCTGCGAACCCCCTGCCGCGCTGCTCGTCCTCGCCCAGGTGTGCACCTACCTGACCAGCGCATCGTCTCCCGCCATCCTCCTCACCATGCTTGTCCCTCTCAGAGACAACCTGGCCTGGATCATGTGTCGGGGAGCATCGTGGGAAGGGAGAAGGGAGCGGAGCGCGATGGCTGTCGGTGCGCTGGATGATGGCATGGTGATGCACACTGACGCGCTCGGGAGACCTCTGCCTGATGTCCAGCATTTCTGGAACAGTCGGAGGAACACTGCAGTTCCAGACAACACCAACCCATTTCCGTGGGAAGGACTGGAGCACTGCCATGCTGAACTCTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU58155 lncRNA downstream 49342 19251593 ~ 19251863 (-) True G49184
TU58066 lncRNA downstream 110590 19190327 ~ 19190615 (-) True G49108
TU58001 lncRNA downstream 248454 19052527 ~ 19052751 (-) True G49053
TU57913 lncRNA downstream 331409 18969591 ~ 18969796 (-) True G48975
TU57908 lncRNA downstream 343746 18957157 ~ 18957459 (-) True G48970
TU58193 lncRNA upstream 98122 19400664 ~ 19400863 (-) True G49215
TU58214 lncRNA upstream 125204 19427746 ~ 19428725 (-) True G49232
TU58488 lncRNA upstream 386050 19688592 ~ 19688877 (-) True G49481
TU58495 lncRNA upstream 411623 19714165 ~ 19715420 (-) True G49484
TU58497 lncRNA upstream 411876 19714418 ~ 19715420 (-) False G49484
XM_026943469.2 mRNA downstream 6504 19287108 ~ 19294701 (-) True mavs
XM_026945113.2 mRNA downstream 15164 19283096 ~ 19286041 (-) True pank2
XM_026935385.2 mRNA downstream 19376 19261810 ~ 19281829 (-) False loxl3b
XM_026935376.2 mRNA downstream 19380 19261810 ~ 19281825 (-) True loxl3b
XM_026935393.2 mRNA downstream 19383 19261810 ~ 19281822 (-) False loxl3b
XM_026942251.2 mRNA upstream 55073 19357615 ~ 19362980 (-) True emx1
XM_026944643.2 mRNA upstream 71767 19374309 ~ 19375581 (-) False noto
XM_034303050.1 mRNA upstream 71767 19374309 ~ 19375581 (-) True noto
XM_034302619.1 mRNA upstream 312175 19614717 ~ 19667659 (-) True atrn
XM_034302620.1 mRNA upstream 312175 19614717 ~ 19667658 (-) False atrn
TU57664 other downstream 687804 18330368 ~ 18613401 (-) True lrmda
TU56951 other downstream 1639821 17657581 ~ 17661384 (-) False col13a1
XR_004577786.1 other downstream 1726783 17562332 ~ 17574422 (-) False LOC113538666
XR_004577787.1 other downstream 1726783 17562332 ~ 17574422 (-) False LOC113538666
TU56907 other downstream 1825144 17471187 ~ 17476061 (-) True cisd1
TU58169 other upstream 13945 19316487 ~ 19319733 (-) True G49195
XR_004577815.1 other upstream 333296 19635838 ~ 19667661 (-) False atrn
TU58944 other upstream 1055392 20357934 ~ 20369097 (-) False gng2
TU58943 other upstream 1055446 20357988 ~ 20369097 (-) False gng2
TU58946 other upstream 1055446 20357988 ~ 20369429 (-) False gng2

Expression Profile